IMP3P1 (IMP3 pseudogene 1) - Rat Genome Database

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Gene: IMP3P1 (IMP3 pseudogene 1) Homo sapiens
Analyze
Symbol: IMP3P1
Name: IMP3 pseudogene 1
RGD ID: 7401111
HGNC Page HGNC:49385
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: IMP3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38910,829,758 - 10,830,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl910,829,752 - 10,830,308 (-)EnsemblGRCh38hg38GRCh38
GRCh37910,829,758 - 10,830,308 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36910,819,629 - 10,820,308 (-)NCBINCBI36Build 36hg18NCBI36
Celera910,762,500 - 10,763,050 (-)NCBICelera
Cytogenetic Map9p23NCBI
HuRef910,793,322 - 10,793,872 (-)NCBIHuRef
CHM1_1910,829,201 - 10,829,751 (-)NCBICHM1_1
T2T-CHM13v2.0910,839,112 - 10,839,662 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:150
Interacting mature miRNAs:152
Transcripts:ENST00000427532
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 1 1 5 1
Below cutoff 13 6 10 4 16 4 11 6 26 3 75 15 2 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000427532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl910,829,752 - 10,830,308 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IMP3P1 COSMIC
Ensembl Genes ENSG00000230589 Ensembl, ENTREZGENE
GTEx ENSG00000230589 GTEx
HGNC ID HGNC:49385 ENTREZGENE
Human Proteome Map IMP3P1 Human Proteome Map
NCBI Gene IMP3P1 ENTREZGENE