TPT1P14 (TPT1 pseudogene 14) - Rat Genome Database

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Gene: TPT1P14 (TPT1 pseudogene 14) Homo sapiens
Analyze
Symbol: TPT1P14
Name: TPT1 pseudogene 14
RGD ID: 7385671
HGNC Page HGNC:49305
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: tumor protein, translationally-controlled 1 pseudogene 14
Related Functional Gene: TPT1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X14,977,566 - 14,978,580 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX14,977,959 - 14,978,463 (-)EnsemblGRCh38hg38GRCh38
GRCh37X14,995,688 - 14,996,702 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X14,905,993 - 14,906,506 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX19,110,924 - 19,111,712 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX12,754,442 - 12,755,231 (-)NCBIHuRef
CHM1_1X15,026,268 - 15,027,056 (-)NCBICHM1_1
T2T-CHM13v2.0X14,558,444 - 14,559,458 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:136
Count of miRNA genes:134
Interacting mature miRNAs:135
Transcripts:ENST00000448018
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 6 2 1 1 5 1 2 1 2 9 1
Below cutoff 75 88 41 10 46 8 186 93 75 18 53 56 3 55 123

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000448018
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX14,977,959 - 14,978,463 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TPT1P14 COSMIC
Ensembl Genes ENSG00000235929 Ensembl
GTEx ENSG00000235929 GTEx
HGNC ID HGNC:49305 ENTREZGENE
Human Proteome Map TPT1P14 Human Proteome Map
NCBI Gene TPT1P14 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-10-04 TPT1P14  TPT1 pseudogene 14  TPT1P14  tumor protein, translationally-controlled 1 pseudogene 14  Symbol and/or name change 19259463 PROVISIONAL