PSMB7P1 (PSMB7 pseudogene 1) - Rat Genome Database

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Gene: PSMB7P1 (PSMB7 pseudogene 1) Homo sapiens
Analyze
Symbol: PSMB7P1
Name: PSMB7 pseudogene 1
RGD ID: 7382812
HGNC Page HGNC:49192
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PSMB7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,149,235 - 20,149,872 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,149,232 - 20,149,745 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,617,394 - 20,618,031 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera14478,979 - 479,494 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14739,261 - 739,776 (+)NCBIHuRef
CHM1_11420,618,473 - 20,618,988 (+)NCBICHM1_1
T2T-CHM13v2.01414,344,036 - 14,344,673 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:189
Count of miRNA genes:184
Interacting mature miRNAs:188
Transcripts:ENST00000556349
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 3 1 1
Below cutoff 32 34 28 7 17 6 70 35 80 3 58 26 1 20 48

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000556349
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1420,149,232 - 20,149,745 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PSMB7P1 COSMIC
Ensembl Genes ENSG00000259074 Ensembl
GTEx ENSG00000259074 GTEx
HGNC ID HGNC:49192 ENTREZGENE
Human Proteome Map PSMB7P1 Human Proteome Map
NCBI Gene PSMB7P1 ENTREZGENE