Ap1b1 (adaptor protein complex AP-1, beta 1 subunit) - Rat Genome Database

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Gene: Ap1b1 (adaptor protein complex AP-1, beta 1 subunit) Mus musculus
Analyze
Symbol: Ap1b1
Name: adaptor protein complex AP-1, beta 1 subunit
RGD ID: 737610
MGI Page MGI
Description: Enables protein kinase binding activity. Acts upstream of or within determination of left/right symmetry; heart development; and kidney development. Predicted to be located in Golgi apparatus and cytosol. Predicted to be part of clathrin adaptor complex. Is expressed in primary sex cord. Used to study Kartagener syndrome; primary ciliary dyskinesia; and visceral heterotaxy. Orthologous to human AP1B1 (adaptor related protein complex 1 subunit beta 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adapter-related protein complex 1 subunit beta-1; adaptor protein complex AP-1 subunit beta-1; adaptor-related protein complex 1 subunit beta-1; adaptor-related protein complex AP-1, beta 1 subunit; Adtb; Adtb1; AP-1 complex subunit beta-1; b2b1660C; b2b1660Clo; beta-1-adaptin; beta-adaptin 1; beta-prime adaptin; beta1-adaptin; clathrin assembly protein complex 1 beta large chain; golgi adaptor HA1/AP1 adaptin beta subunit; Mutant line 1660
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,897,320 - 4,992,731 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,936,824 - 4,992,791 (+)EnsemblGRCm39 Ensembl
GRCm38114,947,320 - 5,042,794 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,986,824 - 5,042,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv37114,886,908 - 4,942,732 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,886,908 - 4,942,732 (+)NCBIMGSCv36mm8
Celera115,484,717 - 5,540,177 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7534311   PMID:9271666   PMID:9661659   PMID:9707615   PMID:9714600   PMID:9733768   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11106728   PMID:11217851  
PMID:12105417   PMID:12383505   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14595844   PMID:14610273   PMID:15377783   PMID:15489334   PMID:15747579   PMID:15752756   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16512683   PMID:16800626   PMID:17092488   PMID:17110338   PMID:17360967   PMID:17967808   PMID:18614564   PMID:18799693   PMID:20519437   PMID:21267068  
PMID:21307259   PMID:21444685   PMID:21677750   PMID:21873635   PMID:22794259   PMID:22922362   PMID:23247405   PMID:25266175   PMID:25807483   PMID:26025364   PMID:27002738   PMID:27057418  
PMID:27889896   PMID:28671696   PMID:28706196   PMID:30333137   PMID:30457570   PMID:30562941   PMID:31138677   PMID:32325033   PMID:32581705   PMID:34622152   PMID:35449600   PMID:36293380  


Genomics

Comparative Map Data
Ap1b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,897,320 - 4,992,731 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,936,824 - 4,992,791 (+)EnsemblGRCm39 Ensembl
GRCm38114,947,320 - 5,042,794 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,986,824 - 5,042,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv37114,886,908 - 4,942,732 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,886,908 - 4,942,732 (+)NCBIMGSCv36mm8
Celera115,484,717 - 5,540,177 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.15NCBI
AP1B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,327,680 - 29,388,570 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,327,680 - 29,388,583 (-)EnsemblGRCh38hg38GRCh38
GRCh372229,723,669 - 29,784,559 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,053,669 - 28,114,569 (-)NCBINCBI36Build 36hg18NCBI36
Build 342228,048,222 - 28,109,123NCBI
Celera2213,523,525 - 13,584,427 (-)NCBICelera
Cytogenetic Map22q12.2ENTREZGENE
HuRef2212,687,908 - 12,748,805 (-)NCBIHuRef
CHM1_12229,683,069 - 29,743,967 (-)NCBICHM1_1
T2T-CHM13v2.02229,791,092 - 29,851,977 (-)NCBIT2T-CHM13v2.0
Ap1b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,093,529 - 84,144,835 (+)NCBIGRCr8
mRatBN7.21479,879,482 - 79,930,778 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,879,533 - 79,930,778 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,281,794 - 84,333,064 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,521,871 - 85,573,146 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,971,168 - 82,022,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,230,652 - 85,281,806 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,230,648 - 85,281,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,927,665 - 85,959,253 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,663,840 - 85,695,487 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11485,682,982 - 85,714,630 (+)NCBI
Celera1478,770,483 - 78,821,787 (+)NCBICelera
Cytogenetic Map14q21NCBI
Ap1b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554553,632,053 - 3,686,046 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554553,632,053 - 3,686,007 (-)NCBIChiLan1.0ChiLan1.0
AP1B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,311,384 - 39,371,820 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,012,016 - 42,072,510 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,383,036 - 10,443,655 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12228,189,831 - 28,291,808 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2228,189,831 - 28,285,007 (-)Ensemblpanpan1.1panPan2
AP1B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,632,970 - 22,715,449 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,630,670 - 22,689,996 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,504,815 - 22,561,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,007,105 - 23,063,883 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2622,909,397 - 23,101,375 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12622,716,272 - 22,773,450 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02622,979,414 - 23,036,219 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,044,435 - 23,101,614 (-)NCBIUU_Cfam_GSD_1.0
Ap1b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,474,816 - 112,527,032 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,341,242 - 3,395,957 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,343,675 - 3,395,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP1B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,469,430 - 46,520,153 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,469,462 - 46,520,175 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,434,365 - 49,485,236 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AP1B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,195,981 - 12,259,289 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,195,755 - 12,259,272 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,891,188 - 113,953,947 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap1b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247475,704,477 - 5,755,321 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247475,703,647 - 5,755,344 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ap1b1
3135 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2478
Count of miRNA genes:601
Interacting mature miRNAs:756
Transcripts:ENSMUST00000009234, ENSMUST00000101613, ENSMUST00000109897, ENSMUST00000133007, ENSMUST00000133014, ENSMUST00000137292, ENSMUST00000142325, ENSMUST00000144426, ENSMUST00000145704
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse

Markers in Region
Y07919  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38115,041,919 - 5,042,025UniSTSGRCm38
MGSCv37114,941,922 - 4,942,028UniSTSGRCm37
Celera115,539,367 - 5,539,473UniSTS
Cytogenetic Map11A2UniSTS
Whitehead/MRC_RH1122.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001243043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA003413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC005528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP765289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY253407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA315828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y07919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000009234   ⟹   ENSMUSP00000009234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,936,824 - 4,992,791 (+)Ensembl
GRCm38.p6 Ensembl114,986,824 - 5,042,791 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101613   ⟹   ENSMUSP00000099134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,959,530 - 4,992,729 (+)Ensembl
GRCm38.p6 Ensembl115,009,530 - 5,042,729 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109897   ⟹   ENSMUSP00000105523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,936,824 - 4,992,729 (+)Ensembl
GRCm38.p6 Ensembl114,986,824 - 5,042,729 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,988,764 - 4,990,421 (+)Ensembl
GRCm38.p6 Ensembl115,038,764 - 5,040,421 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,936,934 - 4,966,851 (+)Ensembl
GRCm38.p6 Ensembl114,986,934 - 5,016,851 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,936,912 - 4,965,741 (+)Ensembl
GRCm38.p6 Ensembl114,986,912 - 5,015,741 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,987,369 - 4,990,402 (+)Ensembl
GRCm38.p6 Ensembl115,037,369 - 5,040,402 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,959,474 - 4,965,741 (+)Ensembl
GRCm38.p6 Ensembl115,009,474 - 5,015,741 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,980,977 - 4,982,790 (+)Ensembl
GRCm38.p6 Ensembl115,030,977 - 5,032,790 (+)Ensembl
RefSeq Acc Id: NM_001243043   ⟹   NP_001229972
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,897,492 - 4,992,731 (+)NCBI
GRCm38114,947,521 - 5,042,794 (+)ENTREZGENE
Celera115,484,636 - 5,540,242 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001243044   ⟹   NP_001229973
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,936,910 - 4,992,731 (+)NCBI
GRCm38114,986,824 - 5,042,794 (+)NCBI
Celera115,484,636 - 5,540,242 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355659   ⟹   NP_001342588
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,936,910 - 4,992,731 (+)NCBI
GRCm38114,986,824 - 5,042,794 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001355660   ⟹   NP_001342589
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,936,910 - 4,992,731 (+)NCBI
GRCm38114,986,824 - 5,042,794 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001417314   ⟹   NP_001404243
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,897,492 - 4,992,731 (+)NCBI
RefSeq Acc Id: NM_007454   ⟹   NP_031480
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,936,910 - 4,992,731 (+)NCBI
GRCm38114,986,824 - 5,042,794 (+)NCBI
MGSCv37114,886,908 - 4,942,732 (+)RGD
Celera115,484,636 - 5,540,242 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514462   ⟹   XP_006514525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,936,875 - 4,992,579 (+)NCBI
GRCm38114,986,875 - 5,042,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245485   ⟹   XP_030101345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,897,867 - 4,992,579 (+)NCBI
GRCm38114,947,329 - 5,042,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245486   ⟹   XP_030101346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,897,867 - 4,992,579 (+)NCBI
GRCm38114,947,329 - 5,042,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245487   ⟹   XP_030101347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,897,320 - 4,992,579 (+)NCBI
GRCm38114,947,320 - 5,042,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245488   ⟹   XP_030101348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,897,867 - 4,992,579 (+)NCBI
GRCm38114,947,329 - 5,042,579 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245489   ⟹   XP_030101349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,897,867 - 4,992,579 (+)NCBI
GRCm38114,947,329 - 5,042,579 (+)NCBI
Sequence:
RefSeq Acc Id: NP_031480   ⟸   NM_007454
- Peptide Label: isoform 2
- UniProtKB: Q3TXG4 (UniProtKB/Swiss-Prot),   Q922E2 (UniProtKB/Swiss-Prot),   O35643 (UniProtKB/Swiss-Prot),   Q3TVN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001229972   ⟸   NM_001243043
- Peptide Label: isoform 1
- UniProtKB: Q8CC13 (UniProtKB/TrEMBL),   Q3TVN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001229973   ⟸   NM_001243044
- Peptide Label: isoform 3
- UniProtKB: Q3TVN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514525   ⟸   XM_006514462
- Peptide Label: isoform X1
- UniProtKB: Q8CC13 (UniProtKB/TrEMBL),   Q3TVN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101347   ⟸   XM_030245487
- Peptide Label: isoform X2
- UniProtKB: Q3TVN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101345   ⟸   XM_030245485
- Peptide Label: isoform X1
- UniProtKB: Q8CC13 (UniProtKB/TrEMBL),   Q3TVN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101346   ⟸   XM_030245486
- Peptide Label: isoform X2
- UniProtKB: Q3TVN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101348   ⟸   XM_030245488
- Peptide Label: isoform X3
- UniProtKB: Q3TVN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101349   ⟸   XM_030245489
- Peptide Label: isoform X4
- UniProtKB: Q3TXG4 (UniProtKB/Swiss-Prot),   O35643 (UniProtKB/Swiss-Prot),   Q922E2 (UniProtKB/Swiss-Prot),   Q3TVN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342588   ⟸   NM_001355659
- Peptide Label: isoform 1
- UniProtKB: Q8CC13 (UniProtKB/TrEMBL),   Q3TVN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342589   ⟸   NM_001355660
- Peptide Label: isoform 4
- UniProtKB: Q3TVN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000009234   ⟸   ENSMUST00000009234
RefSeq Acc Id: ENSMUSP00000099134   ⟸   ENSMUST00000101613
RefSeq Acc Id: ENSMUSP00000105523   ⟸   ENSMUST00000109897
RefSeq Acc Id: NP_001404243   ⟸   NM_001417314
- Peptide Label: isoform 4
- UniProtKB: Q3TVN4 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35643-F1-model_v2 AlphaFold O35643 1-943 view protein structure

Promoters
RGD ID:6820389
Promoter ID:MM_KWN:6263
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000063477,   ENSMUST00000109897,   NM_007454,   OTTMUST00000011332,   OTTMUST00000011333,   UC007HVP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,886,741 - 4,887,241 (+)MPROMDB
RGD ID:6820388
Promoter ID:MM_KWN:6266
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:ENSMUST00000101613,   OTTMUST00000011328
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,909,611 - 4,910,111 (+)MPROMDB
RGD ID:6820391
Promoter ID:MM_KWN:6268
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000011330
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,937,049 - 4,937,549 (+)MPROMDB
RGD ID:6820393
Promoter ID:MM_KWN:6269
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000011331
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,938,201 - 4,938,847 (+)MPROMDB
RGD ID:8673840
Promoter ID:EPDNEW_M14941
Type:initiation region
Name:Ap1b1_1
Description:Mus musculus adaptor protein complex AP-1, beta 1 subunit , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38114,986,910 - 4,986,970EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1096368 AgrOrtholog
Ensembl Genes ENSMUSG00000009090 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000009234 ENTREZGENE
  ENSMUST00000009234.16 UniProtKB/Swiss-Prot
  ENSMUST00000101613 ENTREZGENE
  ENSMUST00000101613.3 UniProtKB/TrEMBL
  ENSMUST00000109897.8 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.1150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.310.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AP_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AP_complex_bsu_1_2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Armadillo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B-adaptin_app_sub_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_a/b/g-adaptin_app_Ig UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_app_Ig-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_b-adaptin_app_Ig-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cnd1_C UniProtKB/TrEMBL
  Coatomer/calthrin_app_sub_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TBP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11764 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1096368 ENTREZGENE
NCBI Gene 11764 ENTREZGENE
PANTHER AP-1 COMPLEX SUBUNIT BETA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11134 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Adaptin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Alpha_adaptinC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B2-adapt-app_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cnd1 UniProtKB/TrEMBL
PhenoGen Ap1b1 PhenoGen
PIRSF AP_complex_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Alpha_adaptinC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B2-adapt-app_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55711 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt AP1B1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TVN4 ENTREZGENE, UniProtKB/TrEMBL
  Q3TXG4 ENTREZGENE
  Q3U1K9_MOUSE UniProtKB/TrEMBL
  Q5SVG4_MOUSE UniProtKB/TrEMBL
  Q5SVG5_MOUSE UniProtKB/TrEMBL
  Q6NXY3_MOUSE UniProtKB/TrEMBL
  Q8CC13 ENTREZGENE, UniProtKB/TrEMBL
  Q922E2 ENTREZGENE
UniProt Secondary Q3TXG4 UniProtKB/Swiss-Prot
  Q922E2 UniProtKB/Swiss-Prot