Stag3 (stromal antigen 3) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Stag3 (stromal antigen 3) Mus musculus
Analyze
Symbol: Stag3
Name: stromal antigen 3
RGD ID: 737602
MGI Page MGI
Description: Predicted to enable chromatin binding activity. Acts upstream of or within homologous chromosome pairing at meiosis and protein localization to chromosome. Located in lateral element; male germ cell nucleus; and transverse filament. Part of meiotic cohesin complex. Is expressed in bone marrow; brain; and genitourinary system. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 8 and spermatogenic failure 61. Orthologous to human STAG3 (stromal antigen 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cohesin subunit SA-3; SA; SA-2; SCC3 homolog 3; stromalin 3; stromalin-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,270,757 - 138,310,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,278,502 - 138,310,655 (+)EnsemblGRCm39 Ensembl
GRCm385138,272,514 - 138,312,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,280,240 - 138,312,393 (+)EnsemblGRCm38mm10GRCm38
MGSCv375138,721,737 - 138,753,621 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,510,339 - 138,542,181 (+)NCBIMGSCv36mm8
Celera5135,263,360 - 135,295,714 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Evaluation of the Stag3 gene and the synaptonemal complex in a rat model (as/as) for male infertility. Bayes M, etal., Mol Reprod Dev 2001 Nov;60(3):414-7.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Fine-scale comparative mapping of the human 7q11.23 region and the orthologous region on mouse chromosome 5G: the low-copy repeats that flank the Williams-Beuren syndrome deletion arose at breakpoint sites of an evolutionary inversion(s). Valero MC, etal., Genomics 2000 Oct 1;69(1):1-13.
Additional References at PubMed
PMID:10349636   PMID:10698974   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11483963   PMID:12034751   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15870106  
PMID:15944401   PMID:16141072   PMID:16141073   PMID:16236716   PMID:17696610   PMID:18180366   PMID:19531582   PMID:21242291   PMID:21267068   PMID:21274006   PMID:21478856   PMID:21527826  
PMID:21677750   PMID:21690297   PMID:21873635   PMID:22164254   PMID:22346761   PMID:22711701   PMID:24194600   PMID:24413433   PMID:24597867   PMID:24608227   PMID:24797474   PMID:24797475  
PMID:24992337   PMID:27172213   PMID:27626380   PMID:27739607   PMID:27796301   PMID:28050734   PMID:28700664   PMID:30853435   PMID:32325033   PMID:34174788   PMID:35489071  


Genomics

Comparative Map Data
Stag3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,270,757 - 138,310,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,278,502 - 138,310,655 (+)EnsemblGRCm39 Ensembl
GRCm385138,272,514 - 138,312,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,280,240 - 138,312,393 (+)EnsemblGRCm38mm10GRCm38
MGSCv375138,721,737 - 138,753,621 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,510,339 - 138,542,181 (+)NCBIMGSCv36mm8
Celera5135,263,360 - 135,295,714 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.01NCBI
STAG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,177,724 - 100,219,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl7100,177,563 - 100,221,488 (+)EnsemblGRCh38hg38GRCh38
GRCh37799,775,347 - 99,812,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,613,474 - 99,649,946 (+)NCBINCBI36Build 36hg18NCBI36
Build 34799,420,188 - 99,456,661NCBI
Celera794,510,888 - 94,547,361 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,410,283 - 94,446,767 (+)NCBIHuRef
CHM1_1799,705,616 - 99,742,079 (+)NCBICHM1_1
T2T-CHM13v2.07101,417,534 - 101,459,147 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,135,619 - 99,172,096 (+)NCBI
Stag3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21217,284,677 - 17,314,936 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,284,794 - 17,314,935 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1218,251,836 - 18,281,954 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01218,875,558 - 18,905,676 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01217,928,975 - 17,959,093 (+)NCBIRnor_WKY
Rnor_6.01219,599,741 - 19,630,775 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,599,834 - 19,630,780 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,656,406 - 21,686,863 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,865,273 - 17,896,993 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11217,854,794 - 17,886,514 (+)NCBI
Celera1219,209,251 - 19,239,357 (+)NCBICelera
Cytogenetic Map12q11NCBI
Stag3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573602,016 - 630,936 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955573602,635 - 631,775 (-)NCBIChiLan1.0ChiLan1.0
STAG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan17166,360,718 - 166,397,948 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,215,064 - 92,249,202 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,645,413 - 105,682,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,648,425 - 105,681,850 (+)Ensemblpanpan1.1panPan2
STAG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,326,402 - 9,354,049 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,326,448 - 9,353,204 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,030,377 - 11,058,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,260,281 - 9,287,741 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,260,338 - 9,286,897 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,112,910 - 9,140,199 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,091,601 - 9,119,271 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,272,833 - 9,300,317 (-)NCBIUU_Cfam_GSD_1.0
Stag3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,578,049 - 133,603,974 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543432,552 - 458,112 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936543430,804 - 458,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,175,915 - 8,211,889 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,175,908 - 8,211,898 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,310,188 - 7,346,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STAG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,853,456 - 12,893,098 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,853,404 - 12,891,638 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,388,692 - 3,427,657 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stag3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,707,999 - 16,732,537 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,706,695 - 16,734,142 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stag3
892 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1116
Count of miRNA genes:496
Interacting mature miRNAs:563
Transcripts:ENSMUST00000048028, ENSMUST00000159189, ENSMUST00000159483, ENSMUST00000160729, ENSMUST00000160849, ENSMUST00000161113, ENSMUST00000161615, ENSMUST00000161691, ENSMUST00000162245
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse

Markers in Region
AJ005678  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385138,312,125 - 138,312,267UniSTSGRCm38
MGSCv375138,753,353 - 138,753,495UniSTSGRCm37
Celera5135,295,446 - 135,295,588UniSTS
Cytogenetic Map5G2UniSTS
cM Map567.0UniSTS
Whitehead/MRC_RH51670.77UniSTS
Stag3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv375138,753,285 - 138,753,525UniSTSGRCm37
Celera5135,295,378 - 135,295,618UniSTS
Cytogenetic Map5G2UniSTS
cM Map567.0UniSTS
cM Map567.0UniSTS
Stag3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385138,312,057 - 138,312,297UniSTSGRCm38
MGSCv375138,753,285 - 138,753,525UniSTSGRCm37
Celera5135,295,378 - 135,295,618UniSTS
Cytogenetic Map5G2UniSTS
cM Map567.0UniSTS
AJ005678  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385138,312,116 - 138,312,237UniSTSGRCm38
MGSCv375138,753,344 - 138,753,465UniSTSGRCm37
Celera5135,295,437 - 135,295,558UniSTS
Cytogenetic Map5G2UniSTS
Whitehead/MRC_RH51673.82UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_016964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02042093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000048028   ⟹   ENSMUSP00000040945
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,278,788 - 138,310,655 (+)Ensembl
GRCm38.p6 Ensembl5138,280,526 - 138,312,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159189   ⟹   ENSMUSP00000124959
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,307,463 - 138,310,648 (+)Ensembl
GRCm38.p6 Ensembl5138,309,201 - 138,312,386 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,278,788 - 138,310,652 (+)Ensembl
GRCm38.p6 Ensembl5138,280,526 - 138,312,390 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160729   ⟹   ENSMUSP00000124170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,278,502 - 138,289,013 (+)Ensembl
GRCm38.p6 Ensembl5138,280,240 - 138,290,751 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160849   ⟹   ENSMUSP00000125376
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,302,700 - 138,307,508 (+)Ensembl
GRCm38.p6 Ensembl5138,304,438 - 138,309,246 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,278,771 - 138,310,655 (+)Ensembl
GRCm38.p6 Ensembl5138,280,509 - 138,312,393 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161615
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,297,438 - 138,299,703 (+)Ensembl
GRCm38.p6 Ensembl5138,299,176 - 138,301,441 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161691   ⟹   ENSMUSP00000125290
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,278,818 - 138,288,668 (+)Ensembl
GRCm38.p6 Ensembl5138,280,556 - 138,290,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162245   ⟹   ENSMUSP00000125523
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5138,278,806 - 138,310,655 (+)Ensembl
GRCm38.p6 Ensembl5138,280,544 - 138,312,393 (+)Ensembl
RefSeq Acc Id: NM_016964   ⟹   NP_058660
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,278,771 - 138,310,655 (+)NCBI
GRCm385138,280,509 - 138,312,393 (+)NCBI
MGSCv375138,721,737 - 138,753,621 (+)RGD
Celera5135,263,360 - 135,295,714 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504596   ⟹   XP_006504659
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,278,434 - 138,310,659 (+)NCBI
GRCm385138,280,166 - 138,312,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504600   ⟹   XP_006504663
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,297,082 - 138,310,659 (+)NCBI
GRCm385138,298,820 - 138,312,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504601   ⟹   XP_006504664
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,297,081 - 138,310,659 (+)NCBI
GRCm385138,298,819 - 138,312,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240948   ⟹   XP_011239250
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,270,757 - 138,310,659 (+)NCBI
GRCm385138,272,514 - 138,312,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320971   ⟹   XP_017176460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,278,434 - 138,298,471 (+)NCBI
GRCm385138,280,142 - 138,300,209 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320972   ⟹   XP_017176461
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,278,434 - 138,298,031 (+)NCBI
GRCm385138,280,142 - 138,299,745 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942532
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,278,434 - 138,310,659 (+)NCBI
Sequence:
RefSeq Acc Id: XR_377146
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395138,278,434 - 138,299,587 (+)NCBI
GRCm385138,280,147 - 138,301,325 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058660   ⟸   NM_016964
- UniProtKB: B2RSV0 (UniProtKB/Swiss-Prot),   O70576 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006504659   ⟸   XM_006504596
- Peptide Label: isoform X1
- UniProtKB: B2RSV0 (UniProtKB/Swiss-Prot),   O70576 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006504664   ⟸   XM_006504601
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006504663   ⟸   XM_006504600
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011239250   ⟸   XM_011240948
- Peptide Label: isoform X1
- UniProtKB: B2RSV0 (UniProtKB/Swiss-Prot),   O70576 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017176460   ⟸   XM_017320971
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017176461   ⟸   XM_017320972
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000124959   ⟸   ENSMUST00000159189
RefSeq Acc Id: ENSMUSP00000040945   ⟸   ENSMUST00000048028
RefSeq Acc Id: ENSMUSP00000125376   ⟸   ENSMUST00000160849
RefSeq Acc Id: ENSMUSP00000124170   ⟸   ENSMUST00000160729
RefSeq Acc Id: ENSMUSP00000125523   ⟸   ENSMUST00000162245
RefSeq Acc Id: ENSMUSP00000125290   ⟸   ENSMUST00000161691
Protein Domains
SCD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70576-F1-model_v2 AlphaFold O70576 1-1240 view protein structure

Promoters
RGD ID:6888520
Promoter ID:EPDNEW_M7711
Type:initiation region
Name:Stag3_1
Description:Mus musculus stromal antigen 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385138,280,523 - 138,280,583EPDNEW
RGD ID:6838427
Promoter ID:MM_KWN:44558
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_016964,   OTTMUST00000054647,   OTTMUST00000054768,   OTTMUST00000054769,   OTTMUST00000054770,   OTTMUST00000054771,   OTTMUST00000054773,   OTTMUST00000054774,   OTTMUST00000075548,   OTTMUST00000075549,   OTTMUST00000075550,   OTTMUST00000075551,   OTTMUST00000075552,   UC009AFL.1,   UC009AFM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365138,721,151 - 138,721,777 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1355311 AgrOrtholog
Ensembl Genes ENSMUSG00000036928 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000040945 ENTREZGENE
  ENSMUSP00000040945.9 UniProtKB/Swiss-Prot
  ENSMUSP00000124170.2 UniProtKB/TrEMBL
  ENSMUSP00000124959.2 UniProtKB/TrEMBL
  ENSMUSP00000125290.2 UniProtKB/TrEMBL
  ENSMUSP00000125376.2 UniProtKB/TrEMBL
  ENSMUSP00000125523.2 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000048028 ENTREZGENE
  ENSMUST00000048028.15 UniProtKB/Swiss-Prot
  ENSMUST00000159189.2 UniProtKB/TrEMBL
  ENSMUST00000160729.8 UniProtKB/TrEMBL
  ENSMUST00000160849.2 UniProtKB/TrEMBL
  ENSMUST00000161691.2 UniProtKB/TrEMBL
  ENSMUST00000162245.8 UniProtKB/Swiss-Prot
InterPro ARM-type_fold UniProtKB/Swiss-Prot
  Cohesin_Scc3/SA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:50878 UniProtKB/Swiss-Prot
MGD MGI:1355311 ENTREZGENE
NCBI Gene 50878 ENTREZGENE
PANTHER COHESIN SUBUNIT SA-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11199 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam STAG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stag3 PhenoGen
PROSITE SCD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt B2RSV0 ENTREZGENE
  E0CXH6_MOUSE UniProtKB/TrEMBL
  E0CYH8_MOUSE UniProtKB/TrEMBL
  F6TV98_MOUSE UniProtKB/TrEMBL
  F7CBN2_MOUSE UniProtKB/TrEMBL
  O70576 ENTREZGENE
  Q3TYZ1_MOUSE UniProtKB/TrEMBL
  Q3UKR7_MOUSE UniProtKB/TrEMBL
  Q3V170_MOUSE UniProtKB/TrEMBL
  STAG3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B2RSV0 UniProtKB/Swiss-Prot