Acta1 (actin alpha 1, skeletal muscle) - Rat Genome Database

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Gene: Acta1 (actin alpha 1, skeletal muscle) Mus musculus
Analyze
Symbol: Acta1
Name: actin alpha 1, skeletal muscle
RGD ID: 737581
MGI Page MGI
Description: Predicted to enable ATP binding activity. Involved in skeletal muscle fiber development. Predicted to be located in actin cytoskeleton and sarcomere. Predicted to be part of dynactin complex. Predicted to be active in actin filament; stress fiber; and striated muscle thin filament. Is expressed in several structures, including alimentary system; brain; genitourinary system; heart; and limb. Used to study nemaline myopathy 3. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 3. Orthologous to human ACTA1 (actin alpha 1, skeletal muscle); INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA959943; Ac; Acta-2; actin, alpha 1, skeletal muscle; actin, alpha skeletal muscle; Acts; Actsk; Actsk-1; alpha-actin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Acta1-rs1  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,618,497 - 124,621,514 (-)NCBIGRCm39mm39
GRCm39 Ensembl8124,618,508 - 124,621,490 (-)Ensembl
GRCm388123,891,758 - 123,894,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,891,769 - 123,894,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv378126,415,667 - 126,418,636 (-)NCBIGRCm37mm9NCBIm37
MGSCv368126,777,857 - 126,780,826 (-)NCBImm8
Celera8128,158,816 - 128,161,785 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(R)-noradrenaline  (ISO)
(S)-nicotine  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (ISO)
5-aza-2'-deoxycytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
aconitine  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (EXP,ISO)
ammonium chloride  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[ghi]perylene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
choline  (EXP)
chrysene  (EXP)
copper(II) sulfate  (ISO)
corticosterone  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
D-glucose  (EXP,ISO)
daunorubicin  (ISO)
deoxynivalenol  (EXP)
diclofenac  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
emodin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
etoposide  (ISO)
flurbiprofen  (EXP)
folic acid  (EXP,ISO)
fucoxanthin  (EXP)
furan  (ISO)
genistein  (EXP)
glucose  (EXP,ISO)
graphite  (EXP)
GSK2181236A  (ISO)
hydralazine  (ISO)
hydrochlorothiazide  (ISO)
hydrogen peroxide  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
lead nitrate  (EXP)
leflunomide  (ISO)
Licochalcone B  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
metformin  (ISO)
mitoxantrone  (ISO)
Monobutylphthalate  (EXP)
naphthalene  (EXP)
nickel sulfate  (EXP)
nicotine  (EXP,ISO)
nitric oxide  (ISO)
ozone  (EXP)
p-anisidine  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylephrine  (EXP,ISO)
phenylmercury acetate  (ISO)
PhIP  (ISO)
pioglitazone  (EXP)
pirinixic acid  (EXP)
pravastatin  (EXP,ISO)
prazosin  (ISO)
progesterone  (EXP,ISO)
propanal  (ISO)
propofol  (ISO)
prostaglandin E2  (ISO)
quercetin  (ISO)
resveratrol  (EXP,ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium fluoride  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
triazines  (EXP)
Tributyltin oxide  (EXP)
triclosan  (ISO)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:1280607   PMID:1618148   PMID:1728592   PMID:1893870   PMID:2069718   PMID:2201580   PMID:2211821   PMID:2731651   PMID:2842249   PMID:2881279   PMID:2983233   PMID:3013550  
PMID:3023046   PMID:3023820   PMID:3075543   PMID:3084797   PMID:6256358   PMID:6641707   PMID:6897014   PMID:6897916   PMID:6928693   PMID:6953429   PMID:7522680   PMID:7588068  
PMID:7626220   PMID:7787235   PMID:7797078   PMID:7835906   PMID:7983147   PMID:8001974   PMID:8043949   PMID:8069308   PMID:8075499   PMID:8093670   PMID:8097205   PMID:8136524  
PMID:8404542   PMID:8422497   PMID:8463322   PMID:8486351   PMID:8661058   PMID:8674414   PMID:8854875   PMID:9069129   PMID:9384381   PMID:9600108   PMID:9609818   PMID:9651579  
PMID:9799237   PMID:9887097   PMID:10349636   PMID:10613908   PMID:10694423   PMID:10699374   PMID:10725239   PMID:10725249   PMID:10950932   PMID:11042159   PMID:11076861   PMID:11161569  
PMID:11217851   PMID:11238910   PMID:11536049   PMID:11950896   PMID:12297046   PMID:12466851   PMID:12477932   PMID:12910265   PMID:14499647   PMID:14633990   PMID:15172687   PMID:15226407  
PMID:15489334   PMID:15499557   PMID:15558031   PMID:15619624   PMID:15688017   PMID:15767668   PMID:15800000   PMID:15929941   PMID:15975910   PMID:16124007   PMID:16141072   PMID:16141073  
PMID:16217033   PMID:16374517   PMID:16424906   PMID:16459152   PMID:16638982   PMID:16881058   PMID:16959763   PMID:17134718   PMID:17146758   PMID:17227580   PMID:17322895   PMID:17468400  
PMID:17705262   PMID:17766470   PMID:17875930   PMID:18287559   PMID:18307411   PMID:18316483   PMID:18400219   PMID:18448675   PMID:18468998   PMID:18538758   PMID:18804439   PMID:19027000  
PMID:19118250   PMID:19277198   PMID:19279140   PMID:19468071   PMID:19506036   PMID:19553474   PMID:19909785   PMID:20096780   PMID:20194497   PMID:20230754   PMID:20530287   PMID:20637809  
PMID:21186337   PMID:21289070   PMID:21303860   PMID:21595780   PMID:21668976   PMID:21749862   PMID:21768337   PMID:21873635   PMID:21985497   PMID:22067542   PMID:22155005   PMID:22158707  
PMID:22207710   PMID:22673621   PMID:22855565   PMID:22908310   PMID:22923619   PMID:23029319   PMID:23063798   PMID:23201579   PMID:23336069   PMID:23369715   PMID:23406902   PMID:23584254  
PMID:23613869   PMID:23736297   PMID:23921644   PMID:23977274   PMID:24302573   PMID:24598388   PMID:24698977   PMID:24840128   PMID:24960163   PMID:25071214   PMID:25190801   PMID:25261348  
PMID:25968320   PMID:26075897   PMID:26438731   PMID:26487682   PMID:26688546   PMID:26721734   PMID:27102768   PMID:27120339   PMID:27150455   PMID:27166947   PMID:27518902   PMID:27571008  
PMID:27899448   PMID:28250050   PMID:28346423   PMID:28378742   PMID:28634551   PMID:28807903   PMID:28827364   PMID:28835631   PMID:28923684   PMID:28973166   PMID:28973536   PMID:29053761  
PMID:29117561   PMID:29293963   PMID:29891665   PMID:29920846   PMID:30065346   PMID:30307112   PMID:30457570   PMID:30562487   PMID:30659114   PMID:30700554   PMID:30713523   PMID:30799229  
PMID:30962377   PMID:31042497   PMID:31206334   PMID:32098917   PMID:32248761   PMID:32325033   PMID:32376900   PMID:33635162  


Genomics

Comparative Map Data
Acta1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,618,497 - 124,621,514 (-)NCBIGRCm39mm39
GRCm39 Ensembl8124,618,508 - 124,621,490 (-)Ensembl
GRCm388123,891,758 - 123,894,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,891,769 - 123,894,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv378126,415,667 - 126,418,636 (-)NCBIGRCm37mm9NCBIm37
MGSCv368126,777,857 - 126,780,826 (-)NCBImm8
Celera8128,158,816 - 128,161,785 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.26NCBI
ACTA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1229,430,365 - 229,434,104 (-)EnsemblGRCh38hg38GRCh38
GRCh381229,431,245 - 229,434,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371229,566,992 - 229,569,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,633,615 - 227,636,466 (-)NCBINCBI36hg18NCBI36
Build 341225,873,729 - 225,876,578NCBI
Celera1202,835,304 - 202,838,155 (-)NCBI
Cytogenetic Map1q42.13NCBI
HuRef1200,057,954 - 200,060,804 (-)NCBIHuRef
CHM1_11230,839,339 - 230,842,183 (-)NCBICHM1_1
Acta1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21951,883,713 - 51,886,725 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl1956,674,074 - 56,677,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01956,674,072 - 56,677,084 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01967,389,899 - 67,392,911 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,081,496 - 54,084,508 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11954,086,370 - 54,089,389 (-)NCBI
Celera1951,258,256 - 51,261,324 (-)NCBICelera
Cytogenetic Map19q12NCBI
Acta1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554928,644,146 - 8,647,523 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554928,644,696 - 8,647,412 (+)NCBIChiLan1.0ChiLan1.0
ACTA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11210,007,622 - 210,010,459 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,007,622 - 210,010,469 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01204,975,646 - 204,978,523 (-)NCBIMhudiblu_PPA_v0panPan3
ACTA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.149,811,726 - 9,814,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl49,811,801 - 9,814,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha49,802,887 - 9,805,701 (+)NCBI
ROS_Cfam_1.049,842,369 - 9,845,196 (+)NCBI
UMICH_Zoey_3.149,846,012 - 9,848,831 (+)NCBI
UNSW_CanFamBas_1.049,960,597 - 9,963,412 (+)NCBI
UU_Cfam_GSD_1.0410,212,935 - 10,215,761 (+)NCBI
Acta1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934444,071,243 - 44,074,156 (+)NCBI
SpeTri2.0NW_00493648420,236,320 - 20,239,385 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11460,412,651 - 60,415,687 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,236,192 - 65,239,197 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12566,700,448 - 66,703,325 (-)NCBI
ChlSab1.1 Ensembl2566,700,369 - 66,714,891 (-)Ensembl
Vero_WHO_p1.0NW_02366605568,553,718 - 68,559,732 (-)NCBI
Acta1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477519,650,923 - 19,653,707 (+)NCBI

Position Markers
GVL|STS_ADH2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,892,281 - 123,892,688UniSTSGRCm38
MGSCv378126,416,181 - 126,416,588UniSTSGRCm37
Celera8128,159,330 - 128,159,737UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
Acta1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv378126,415,697 - 126,415,863UniSTSGRCm37
MGSCv378126,419,258 - 126,419,523UniSTSGRCm37
Celera8128,162,405 - 128,162,642UniSTS
Celera8128,158,846 - 128,159,012UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
AA959943  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,891,781 - 123,891,974UniSTSGRCm38
MGSCv378126,415,681 - 126,415,874UniSTSGRCm37
Celera8128,158,830 - 128,159,023UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
Whitehead/MRC_RH81436.63UniSTS
PMC151529P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,892,972 - 123,893,419UniSTSGRCm38
MGSCv378126,416,872 - 126,417,319UniSTSGRCm37
Celera8128,160,021 - 128,160,468UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
D687  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,895,364 - 123,895,615UniSTSGRCm38
MGSCv378126,419,264 - 126,419,515UniSTSGRCm37
Celera8128,162,411 - 128,162,634UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
LOC345651  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X152,433,013 - 152,433,142UniSTSGRCm38
MGSCv37X148,867,556 - 148,867,685UniSTSGRCm37
Cytogenetic Map5G2UniSTS
Cytogenetic MapXF3UniSTS
Cytogenetic Map8E2UniSTS
cM Map580.0UniSTS
cM Map867.0UniSTS
PMC212730P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E2UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map193.3UniSTS
cM Map580.0UniSTS
cM Map867.0UniSTS
PMC316374P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,894,519 - 123,895,386UniSTSGRCm38
MGSCv378126,418,419 - 126,419,286UniSTSGRCm37
Celera8128,161,568 - 128,162,433UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
PMC83875P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,894,676 - 123,894,776UniSTSGRCm38
MGSCv378126,418,576 - 126,418,676UniSTSGRCm37
Celera8128,161,725 - 128,161,825UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
PMC87052P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,210 - 37,883,637UniSTSGRCm38
GRCm385142,903,796 - 142,904,448UniSTSGRCm38
MGSCv371637,883,296 - 37,883,723UniSTSGRCm37
MGSCv375143,665,475 - 143,666,127UniSTSGRCm37
Celera1638,289,878 - 38,290,305UniSTS
Celera5139,952,213 - 139,952,865UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
cM Map867.0UniSTS
PMC209527P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,503 - 142,905,456UniSTSGRCm38
MGSCv375143,666,182 - 143,667,135UniSTSGRCm37
Celera5139,952,920 - 139,953,873UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map8E2UniSTS
cM Map580.0UniSTS
cM Map867.0UniSTS
Acta1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E2UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map11E2UniSTS
cM Map867.0UniSTS
Acta1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,891,797 - 123,891,963UniSTSGRCm38
MGSCv378126,415,697 - 126,415,863UniSTSGRCm37
Celera8128,158,846 - 128,159,012UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
Acta1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,895,358 - 123,895,623UniSTSGRCm38
MGSCv378126,419,258 - 126,419,523UniSTSGRCm37
Celera8128,162,405 - 128,162,642UniSTS
Cytogenetic Map8E2UniSTS
cM Map867.0UniSTS
Acta1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889000000130800000Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined895518613129018580Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)896900000129401213Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)897663894129401213Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined897836895129401213Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899101792129401213Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899101792129401213Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100238570129401213Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8102716921127055036Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8104307238129401213Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8104307238129401213Mouse
14746994Manh65_mmandible shape 65 (mouse)8105762890129401213Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8109688333129401213Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8109688333129401213Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8110755016129401213Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8110755016129401213Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined113712788125329141Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120000000131200000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:150
Interacting mature miRNAs:164
Transcripts:ENSMUST00000034453
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034453   ⟹   ENSMUSP00000034453
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl8123,891,769 - 123,894,751 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212584   ⟹   ENSMUSP00000148594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl8123,893,146 - 123,894,751 (-)Ensembl
RefSeq Acc Id: NM_001272041   ⟹   NP_001258970
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398124,618,497 - 124,621,514 (-)NCBI
GRCm388123,891,758 - 123,894,775 (-)NCBI
Celera8128,158,807 - 128,161,824 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009606   ⟹   NP_033736
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398124,618,497 - 124,621,514 (-)NCBI
GRCm388123,891,758 - 123,894,775 (-)NCBI
MGSCv378126,415,667 - 126,418,636 (-)RGD
Celera8128,158,807 - 128,161,824 (-)NCBI
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033736   ⟸   NM_009606
- UniProtKB: P68134 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258970   ⟸   NM_001272041
- UniProtKB: P68134 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034453   ⟸   ENSMUST00000034453
RefSeq Acc Id: ENSMUSP00000148594   ⟸   ENSMUST00000212584

Promoters
RGD ID:8668607
Promoter ID:EPDNEW_M12334
Type:multiple initiation site
Name:Acta1_1
Description:Mus musculus actin, alpha 1, skeletal muscle , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388123,894,751 - 123,894,811EPDNEW
RGD ID:6848249
Promoter ID:MM_ACW:49258
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ACTA1.BSEP07,   ACTA1.CSEP07,   ACTA1.DSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368126,416,776 - 126,417,276 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:87902 AgrOrtholog
Ensembl Genes ENSMUSG00000031972 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034453 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148594 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034453 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000212584 UniProtKB/TrEMBL
InterPro Actin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Actin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11459 UniProtKB/Swiss-Prot
MGD MGI:87902 ENTREZGENE
NCBI Gene 11459 ENTREZGENE
PANTHER PTHR11937 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Actin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acta1 PhenoGen
PRINTS ACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACTINS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTINS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RM20_MOUSE UniProtKB/TrEMBL
  ACTS_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q61264_MOUSE UniProtKB/TrEMBL
  Q61272_MOUSE UniProtKB/TrEMBL
UniProt Secondary P02568 UniProtKB/Swiss-Prot
  P99020 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-06-29 Acta1  actin alpha 1, skeletal muscle  Acta1  actin, alpha 1, skeletal muscle  Symbol and/or name change 5135510 APPROVED