Pdzk1 (PDZ domain containing 1) - Rat Genome Database

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Gene: Pdzk1 (PDZ domain containing 1) Mus musculus
Analyze
Symbol: Pdzk1
Name: PDZ domain containing 1
RGD ID: 737558
MGI Page MGI
Description: Predicted to enable PDZ domain binding activity; protein-membrane adaptor activity; and scavenger receptor binding activity. Involved in positive regulation of protein targeting to membrane; protein localization to plasma membrane; and regulation of monoatomic anion transport. Acts upstream of or within in utero embryonic development. Located in brush border membrane. Is expressed in several structures, including genitourinary system; liver; lung; thymus; and white fat. Orthologous to several human genes including PDZK1 (PDZ domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700023D20Rik; 2610507N21Rik; 4921513F16Rik; AI267131; AI314638; AL022680; CFTR-associated protein of 70 kDa; D3Ertd537; D3Ertd537e; mPDZK; mPDZK1; Na(+)/H(+) exchange regulatory cofactor NHE-RF3; Na(+)/H(+) exchanger regulatory factor 3; na/Pi cotransporter C-terminal-associated protein 1; naPi-Cap1; NHERF-3; Nherf3; PDZ domain-containing protein 1; Pdzd1; RIKEN cDNA 1700023D20 gene; sodium-hydrogen exchanger regulatory factor 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18265  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,736,772 - 96,778,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,736,600 - 96,778,242 (+)EnsemblGRCm39 Ensembl
GRCm38396,829,456 - 96,870,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,829,284 - 96,870,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,633,988 - 96,674,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,915,531 - 96,956,331 (+)NCBIMGSCv36mm8
Celera398,239,046 - 98,278,106 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map342.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-heptadecafluoro-1-decanol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-nonylphenol  (ISO)
4-octylphenol  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
carbon nanotube  (EXP)
chromium(6+)  (EXP)
ciglitazone  (ISO)
clofibric acid  (ISO)
Clofop  (ISO)
clomiphene  (ISO)
cocaine  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (EXP)
daidzein  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
Enterolactone  (ISO)
estriol  (ISO)
estrone  (ISO)
flurbiprofen  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gefitinib  (ISO)
genistein  (ISO)
glafenine  (ISO)
GW 501516  (ISO)
hexestrol  (ISO)
hydrogen peroxide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
isotretinoin  (ISO)
menadione  (ISO)
mestranol  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (EXP)
mono(2-ethylhexyl) phthalate  (EXP)
Muraglitazar  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phytoestrogen  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
tamoxifen  (ISO)
Tesaglitazar  (ISO)
Tetrachlorobisphenol A  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
wortmannin  (EXP,ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Targeted disruption of the PDZK1 gene by homologous recombination. Kocher O, etal., Mol Cell Biol 2003 Feb;23(4):1175-80.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10496535   PMID:10922068   PMID:11042159   PMID:11051556   PMID:11076861   PMID:11099500   PMID:11753387   PMID:12477932   PMID:12652657  
PMID:12754212   PMID:12837682   PMID:14531806   PMID:14531807   PMID:14551195   PMID:14610273   PMID:14660441   PMID:15489334   PMID:15517343   PMID:15523054   PMID:15837786   PMID:15994332  
PMID:16141072   PMID:16141073   PMID:16141316   PMID:16867981   PMID:17055779   PMID:17347851   PMID:17390218   PMID:17395628   PMID:17507652   PMID:17567914   PMID:17911089   PMID:17990980  
PMID:18174467   PMID:18322073   PMID:18342019   PMID:18346943   PMID:18407958   PMID:18513727   PMID:18544532   PMID:19116202   PMID:19221439   PMID:19956623   PMID:20739281   PMID:21084765  
PMID:21183661   PMID:21267068   PMID:21388960   PMID:21602281   PMID:21677750   PMID:21816982   PMID:21873635   PMID:22652597   PMID:22848392   PMID:22904329   PMID:22967998   PMID:23720744  
PMID:23784542   PMID:23936087   PMID:24115750   PMID:24297041   PMID:24436471   PMID:24523912   PMID:25271043   PMID:25886360   PMID:26183564   PMID:27996060   PMID:28754554   PMID:28882822  
PMID:29305867   PMID:29405165   PMID:29539633   PMID:29623786   PMID:29853191   PMID:29997285   PMID:30973865   PMID:31019307   PMID:31118497   PMID:32179912   PMID:32325033   PMID:37159505  
PMID:38158021   PMID:38355793   PMID:39019845  


Genomics

Comparative Map Data
Pdzk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,736,772 - 96,778,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,736,600 - 96,778,242 (+)EnsemblGRCm39 Ensembl
GRCm38396,829,456 - 96,870,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,829,284 - 96,870,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,633,988 - 96,674,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,915,531 - 96,956,331 (+)NCBIMGSCv36mm8
Celera398,239,046 - 98,278,106 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map342.0NCBI
PDZK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,670,852 - 145,707,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,670,852 - 145,708,148 (-)EnsemblGRCh38hg38GRCh38
GRCh371145,727,666 - 145,764,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,439,083 - 144,475,430 (+)NCBINCBI36Build 36hg18NCBI36
Build 341143,216,769 - 143,253,117NCBI
Celera1119,930,736 - 119,957,156 (+)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1119,691,465 - 119,728,015 (+)NCBIHuRef
CHM1_11147,038,978 - 147,075,526 (-)NCBICHM1_1
T2T-CHM13v2.01144,787,642 - 144,824,930 (-)NCBIT2T-CHM13v2.0
Pdzk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82187,064,995 - 187,096,348 (+)NCBIGRCr8
mRatBN7.22184,376,161 - 184,407,514 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,376,161 - 184,407,514 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2192,046,710 - 192,077,941 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,846,505 - 189,877,666 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,679,274 - 184,710,509 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,965,685 - 198,999,323 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,965,685 - 198,999,323 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02218,452,670 - 218,484,881 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,643,593 - 191,675,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,606,346 - 191,638,749 (+)NCBI
Celera2176,900,642 - 176,931,947 (+)NCBICelera
Cytogenetic Map2q34NCBI
Pdzk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568386,904 - 436,346 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955568405,697 - 436,346 (+)NCBIChiLan1.0ChiLan1.0
PDZK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,060,229 - 103,125,645 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,647,669 - 102,708,517 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,034,097 - 122,091,823 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,579,273 - 113,615,526 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,579,273 - 113,615,390 (-)Ensemblpanpan1.1panPan2
PDZK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,496,977 - 58,536,772 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1757,964,905 - 58,005,087 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01759,493,230 - 59,533,453 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11758,366,239 - 58,406,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,427,299 - 58,467,509 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,153,604 - 59,193,832 (-)NCBIUU_Cfam_GSD_1.0
Pdzk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,550,890 - 20,577,629 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936867426,648 - 439,512 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDZK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,625,080 - 99,657,161 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,625,085 - 99,657,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,286,291 - 109,324,485 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDZK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12013,026,422 - 13,076,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2013,040,475 - 13,079,241 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603815,720,272 - 15,756,120 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdzk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,022,967 - 17,057,447 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,023,837 - 17,057,160 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pdzk1
2025 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1187
Count of miRNA genes:472
Interacting mature miRNAs:540
Transcripts:ENSMUST00000058865, ENSMUST00000107069, ENSMUST00000107070, ENSMUST00000128789, ENSMUST00000135031, ENSMUST00000138014, ENSMUST00000153256
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse

Markers in Region
AI132457  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,870,270 - 96,870,412UniSTSGRCm38
MGSCv37396,674,193 - 96,674,335UniSTSGRCm37
Celera398,277,450 - 98,277,592UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH31099.86UniSTS
AW552393  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,858,264 - 96,858,387UniSTSGRCm38
MGSCv37396,662,187 - 96,662,310UniSTSGRCm37
Celera398,265,432 - 98,265,555UniSTS
Cytogenetic Map3F2.1UniSTS
Whitehead/MRC_RH31099.86UniSTS
Pdzk1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,869,190 - 96,870,129UniSTSGRCm38
MGSCv37396,673,113 - 96,674,052UniSTSGRCm37
Celera398,276,370 - 98,277,309UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map3F2.1UniSTS
AI267131  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,868,475 - 96,869,052UniSTSGRCm38
MGSCv37396,672,398 - 96,672,975UniSTSGRCm37
Celera398,275,655 - 98,276,232UniSTS
Cytogenetic Map3F2.1UniSTS
Whitehead/MRC_RH31096.19UniSTS
AI314638  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,870,623 - 96,870,792UniSTSGRCm38
MGSCv37396,674,546 - 96,674,715UniSTSGRCm37
Celera398,277,803 - 98,277,972UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH31099.76UniSTS
RH125331  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,870,420 - 96,870,595UniSTSGRCm38
MGSCv37396,674,343 - 96,674,518UniSTSGRCm37
Celera398,277,600 - 98,277,775UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map3F2UniSTS
PMC141144P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,849,986 - 96,850,412UniSTSGRCm38
MGSCv37396,653,909 - 96,654,335UniSTSGRCm37
Celera398,256,751 - 98,257,177UniSTS
Cytogenetic Map3F2.1UniSTS
AU022450  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,870,129 - 96,870,371UniSTSGRCm38
MGSCv37396,674,052 - 96,674,294UniSTSGRCm37
Celera398,277,309 - 98,277,551UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map3F2.1UniSTS
cM Map3 UniSTS
Whitehead/MRC_RH31099.86UniSTS
Pdzk1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,832,224 - 96,832,437UniSTSGRCm38
MGSCv37396,636,147 - 96,636,360UniSTSGRCm37
Celera398,241,205 - 98,241,418UniSTS
Cytogenetic Map3F2.1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001146001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF220100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF474247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW259368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000058865   ⟹   ENSMUSP00000058936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,737,392 - 96,778,242 (+)Ensembl
GRCm38.p6 Ensembl396,830,076 - 96,870,926 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107069   ⟹   ENSMUSP00000102684
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,739,487 - 96,777,788 (+)Ensembl
GRCm38.p6 Ensembl396,832,171 - 96,870,472 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107070   ⟹   ENSMUSP00000102685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,739,470 - 96,778,062 (+)Ensembl
GRCm38.p6 Ensembl396,832,154 - 96,870,746 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128789   ⟹   ENSMUSP00000123166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,740,542 - 96,757,695 (+)Ensembl
GRCm38.p6 Ensembl396,833,226 - 96,850,379 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135031   ⟹   ENSMUSP00000114157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,736,600 - 96,758,971 (+)Ensembl
GRCm38.p6 Ensembl396,829,284 - 96,851,655 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138014   ⟹   ENSMUSP00000115584
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,736,779 - 96,759,056 (+)Ensembl
GRCm38.p6 Ensembl396,829,463 - 96,851,740 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153256   ⟹   ENSMUSP00000118846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,739,487 - 96,777,912 (+)Ensembl
GRCm38.p6 Ensembl396,832,171 - 96,870,596 (+)Ensembl
RefSeq Acc Id: NM_001146001   ⟹   NP_001139473
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,739,990 - 96,778,242 (+)NCBI
GRCm38396,832,674 - 96,870,926 (+)NCBI
MGSCv37396,633,988 - 96,674,849 (+)RGD
Celera398,239,046 - 98,278,106 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355710   ⟹   NP_001342639
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,739,487 - 96,778,242 (+)NCBI
GRCm38396,832,171 - 96,870,926 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021517   ⟹   NP_067492
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,737,381 - 96,778,242 (+)NCBI
GRCm38396,830,065 - 96,870,926 (+)NCBI
MGSCv37396,633,988 - 96,674,849 (+)RGD
Celera398,239,046 - 98,278,106 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011240178   ⟹   XP_011238480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,740,547 - 96,778,238 (+)NCBI
GRCm38396,833,231 - 96,870,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319675   ⟹   XP_017175164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,736,772 - 96,778,238 (+)NCBI
GRCm38396,829,456 - 96,870,922 (+)NCBI
Sequence:
RefSeq Acc Id: NP_067492   ⟸   NM_021517
- UniProtKB: Q9JIL4 (UniProtKB/Swiss-Prot),   Q9CQ72 (UniProtKB/Swiss-Prot),   Q8R4G2 (UniProtKB/Swiss-Prot),   Q8CDP5 (UniProtKB/Swiss-Prot),   A0A0R4J1V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139473   ⟸   NM_001146001
- UniProtKB: Q9JIL4 (UniProtKB/Swiss-Prot),   Q9CQ72 (UniProtKB/Swiss-Prot),   Q8R4G2 (UniProtKB/Swiss-Prot),   Q8CDP5 (UniProtKB/Swiss-Prot),   A0A0R4J1V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238480   ⟸   XM_011240178
- Peptide Label: isoform X1
- UniProtKB: Q9JIL4 (UniProtKB/Swiss-Prot),   Q9CQ72 (UniProtKB/Swiss-Prot),   Q8R4G2 (UniProtKB/Swiss-Prot),   Q8CDP5 (UniProtKB/Swiss-Prot),   A0A0R4J1V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017175164   ⟸   XM_017319675
- Peptide Label: isoform X1
- UniProtKB: Q9JIL4 (UniProtKB/Swiss-Prot),   Q9CQ72 (UniProtKB/Swiss-Prot),   Q8R4G2 (UniProtKB/Swiss-Prot),   Q8CDP5 (UniProtKB/Swiss-Prot),   A0A0R4J1V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342639   ⟸   NM_001355710
- UniProtKB: Q9JIL4 (UniProtKB/Swiss-Prot),   Q9CQ72 (UniProtKB/Swiss-Prot),   Q8R4G2 (UniProtKB/Swiss-Prot),   Q8CDP5 (UniProtKB/Swiss-Prot),   A0A0R4J1V0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000115584   ⟸   ENSMUST00000138014
Ensembl Acc Id: ENSMUSP00000102684   ⟸   ENSMUST00000107069
Ensembl Acc Id: ENSMUSP00000102685   ⟸   ENSMUST00000107070
Ensembl Acc Id: ENSMUSP00000114157   ⟸   ENSMUST00000135031
Ensembl Acc Id: ENSMUSP00000123166   ⟸   ENSMUST00000128789
Ensembl Acc Id: ENSMUSP00000118846   ⟸   ENSMUST00000153256
Ensembl Acc Id: ENSMUSP00000058936   ⟸   ENSMUST00000058865
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIL4-F1-model_v2 AlphaFold Q9JIL4 1-519 view protein structure

Promoters
RGD ID:6834217
Promoter ID:MM_KWN:35421
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney
Transcripts:OTTMUST00000060823,   OTTMUST00000060824
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36396,632,506 - 96,633,407 (+)MPROMDB
RGD ID:6833301
Promoter ID:MM_KWN:35423
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000107069,   OTTMUST00000060825,   UC008QOJ.1,   UC008QOK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36396,635,306 - 96,635,806 (-)MPROMDB
RGD ID:6834216
Promoter ID:MM_KWN:35424
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000060822
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36396,636,606 - 96,637,106 (+)MPROMDB
RGD ID:6881720
Promoter ID:EPDNEW_M4311
Type:initiation region
Name:Pdzk1_1
Description:Mus musculus PDZ domain containing 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4313  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38396,830,131 - 96,830,191EPDNEW
RGD ID:6881824
Promoter ID:EPDNEW_M4313
Type:initiation region
Name:Pdzk1_2
Description:Mus musculus PDZ domain containing 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4311  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38396,832,171 - 96,832,231EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1928901 AgrOrtholog
Ensembl Genes ENSMUSG00000038298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000058865 ENTREZGENE
  ENSMUST00000058865.14 UniProtKB/TrEMBL
  ENSMUST00000107069 ENTREZGENE
  ENSMUST00000107069.8 UniProtKB/TrEMBL
  ENSMUST00000107070 ENTREZGENE
  ENSMUST00000107070.8 UniProtKB/TrEMBL
  ENSMUST00000128789.2 UniProtKB/TrEMBL
  ENSMUST00000135031.8 UniProtKB/TrEMBL
  ENSMUST00000138014.8 UniProtKB/TrEMBL
  ENSMUST00000153256.3 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:59020 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1928901 ENTREZGENE
NCBI Gene Pdzk1 ENTREZGENE
PANTHER GH04176P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA(+)/H(+) EXCHANGE REGULATORY COFACTOR NHE-RF3-RELATED UniProtKB/TrEMBL
  PDZ DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pdzk1 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J1V0 ENTREZGENE, UniProtKB/TrEMBL
  D3YW13_MOUSE UniProtKB/TrEMBL
  D3YZS9_MOUSE UniProtKB/TrEMBL
  D3Z114_MOUSE UniProtKB/TrEMBL
  NHRF3_MOUSE UniProtKB/Swiss-Prot
  Q8CDP5 ENTREZGENE
  Q8R4G2 ENTREZGENE
  Q9CQ72 ENTREZGENE
  Q9JIL4 ENTREZGENE
UniProt Secondary Q8CDP5 UniProtKB/Swiss-Prot
  Q8R4G2 UniProtKB/Swiss-Prot
  Q9CQ72 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Pdzk1  PDZ domain containing 1  2610507N21Rik  RIKEN cDNA 2610507N21 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 2610507N21Rik  RIKEN cDNA 2610507N21 gene  Pdzk1  PDZ domain containing 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Pdzk1  PDZ domain containing 1  1700023D20Rik  RIKEN cDNA 1700023D20 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 1700023D20Rik  RIKEN cDNA 1700023D20 gene  Pdzk1  PDZ domain containing 1  Symbol and/or name change 5135510 APPROVED