Gde1 (glycerophosphodiester phosphodiesterase 1) - Rat Genome Database

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Gene: Gde1 (glycerophosphodiester phosphodiesterase 1) Mus musculus
Analyze
Symbol: Gde1
Name: glycerophosphodiester phosphodiesterase 1
RGD ID: 737531
MGI Page MGI
Description: Enables glycerophosphodiester phosphodiesterase activity; glycerophosphoinositol glycerophosphodiesterase activity; and lysophospholipase activity. Involved in ethanolamine metabolic process. Acts upstream of or within N-acylethanolamine metabolic process and phospholipid metabolic process. Located in plasma membrane. Is expressed in several structures, including ganglia; gut; lower urinary tract; lung; and nasal cavity epithelium. Orthologous to human GDE1 (glycerophosphodiester phosphodiesterase 1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1200003M13Rik; glycerophosphoinositol glycerophosphodiesterase GDE1; lysophospholipase D GDE1; membrane interacting protein of RGS16; membrane-interacting protein of RGS16; MIR; Mir16; RGS16
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397118,287,781 - 118,304,961 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7118,287,768 - 118,305,001 (-)EnsemblGRCm39 Ensembl
GRCm387118,688,558 - 118,705,738 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7118,688,545 - 118,705,778 (-)EnsemblGRCm38mm10GRCm38
MGSCv377125,832,072 - 125,849,252 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367118,479,707 - 118,496,887 (-)NCBIMGSCv36mm8
Celera7118,620,760 - 118,637,260 (-)NCBICelera
Cytogenetic Map7F2NCBI
cM Map763.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasmic vesicle  (IEA)
membrane  (IDA)
plasma membrane  (IBA,IMP,ISS)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. MIR16, a putative membrane glycerophosphodiester phosphodiesterase, interacts with RGS16. Zheng B, etal., Proc Natl Acad Sci U S A 2000 Apr 11;97(8):3999-4004.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12576545   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18227059   PMID:20393650   PMID:20797612   PMID:21267068   PMID:21801852   PMID:21873635   PMID:22052914   PMID:23425575   PMID:25596343   PMID:26067236   PMID:38355793   PMID:38769369  


Genomics

Comparative Map Data
Gde1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397118,287,781 - 118,304,961 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7118,287,768 - 118,305,001 (-)EnsemblGRCm39 Ensembl
GRCm387118,688,558 - 118,705,738 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7118,688,545 - 118,705,778 (-)EnsemblGRCm38mm10GRCm38
MGSCv377125,832,072 - 125,849,252 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367118,479,707 - 118,496,887 (-)NCBIMGSCv36mm8
Celera7118,620,760 - 118,637,260 (-)NCBICelera
Cytogenetic Map7F2NCBI
cM Map763.52NCBI
GDE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381619,501,693 - 19,522,098 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1619,501,693 - 19,522,123 (-)EnsemblGRCh38hg38GRCh38
GRCh371619,513,015 - 19,533,420 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361619,420,516 - 19,440,951 (-)NCBINCBI36Build 36hg18NCBI36
Build 341619,420,517 - 19,440,951NCBI
Celera1618,662,036 - 18,682,461 (-)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1618,049,942 - 18,070,374 (-)NCBIHuRef
CHM1_11619,600,278 - 19,620,704 (-)NCBICHM1_1
T2T-CHM13v2.01619,432,571 - 19,452,970 (-)NCBIT2T-CHM13v2.0
Gde1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,451,182 - 182,466,569 (-)NCBIGRCr8
mRatBN7.21173,016,984 - 173,032,396 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1172,954,394 - 173,032,429 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1181,329,538 - 181,344,924 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01188,515,643 - 188,531,029 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,245,807 - 181,261,211 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,367,550 - 188,407,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,394,814 - 188,407,132 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01195,310,648 - 195,350,223 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1170,784,465 - 170,799,754 (-)NCBICelera
Cytogenetic Map1q35NCBI
Gde1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554423,186,440 - 3,219,092 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554423,186,440 - 3,219,092 (-)NCBIChiLan1.0ChiLan1.0
GDE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21820,766,798 - 20,788,610 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11625,288,137 - 25,309,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01618,789,681 - 18,809,783 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11619,602,611 - 19,623,047 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1619,602,611 - 19,623,041 (-)Ensemblpanpan1.1panPan2
GDE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1625,740,741 - 25,765,404 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl625,740,765 - 25,758,489 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha627,103,461 - 27,127,484 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0625,895,769 - 25,919,783 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl625,895,805 - 25,913,895 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1625,695,772 - 25,719,787 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0625,590,834 - 25,614,612 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0625,979,889 - 26,003,903 (+)NCBIUU_Cfam_GSD_1.0
Gde1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344117,079,632 - 117,096,259 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365015,176,909 - 5,193,543 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365015,177,511 - 5,193,484 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl326,190,287 - 26,206,191 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1326,190,261 - 26,205,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2326,906,519 - 26,922,627 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GDE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1517,782,202 - 17,802,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl517,781,214 - 17,802,894 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606812,127,594 - 12,149,062 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gde1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247822,838,164 - 2,860,568 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247822,838,151 - 2,859,789 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gde1
611 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:363
Count of miRNA genes:262
Interacting mature miRNAs:302
Transcripts:ENSMUST00000038791, ENSMUST00000132509
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC152412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF212860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000038791   ⟹   ENSMUSP00000046371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,287,768 - 118,305,001 (-)Ensembl
GRCm38.p6 Ensembl7118,688,545 - 118,705,778 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132509   ⟹   ENSMUSP00000122015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,288,334 - 118,304,603 (-)Ensembl
GRCm38.p6 Ensembl7118,689,111 - 118,705,380 (-)Ensembl
Ensembl Acc Id: ENSMUST00000207323   ⟹   ENSMUSP00000147236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,290,956 - 118,304,983 (-)Ensembl
GRCm38.p6 Ensembl7118,691,733 - 118,705,760 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208040   ⟹   ENSMUSP00000147251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,290,825 - 118,304,971 (-)Ensembl
GRCm38.p6 Ensembl7118,691,602 - 118,705,748 (-)Ensembl
RefSeq Acc Id: NM_019580   ⟹   NP_062526
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397118,287,781 - 118,304,961 (-)NCBI
GRCm387118,688,558 - 118,705,738 (-)ENTREZGENE
MGSCv377125,832,072 - 125,849,252 (-)RGD
Celera7118,620,760 - 118,637,260 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_062526   ⟸   NM_019580
- UniProtKB: Q3UBU4 (UniProtKB/Swiss-Prot),   Q9JL56 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000122015   ⟸   ENSMUST00000132509
Ensembl Acc Id: ENSMUSP00000147251   ⟸   ENSMUST00000208040
Ensembl Acc Id: ENSMUSP00000147236   ⟸   ENSMUST00000207323
Ensembl Acc Id: ENSMUSP00000046371   ⟸   ENSMUST00000038791
Protein Domains
GP-PDE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JL56-F1-model_v2 AlphaFold Q9JL56 1-331 view protein structure

Promoters
RGD ID:8665359
Promoter ID:EPDNEW_M10711
Type:initiation region
Name:Gde1_1
Description:Mus musculus glycerophosphodiester phosphodiesterase 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387118,705,760 - 118,705,820EPDNEW
RGD ID:6841167
Promoter ID:MM_KWN:52443
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000056450,   OTTMUST00000056451
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367125,848,989 - 125,849,489 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891827 AgrOrtholog
Ensembl Genes ENSMUSG00000033917 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038791 ENTREZGENE
  ENSMUST00000038791.15 UniProtKB/Swiss-Prot
  ENSMUST00000132509.4 UniProtKB/TrEMBL
  ENSMUST00000207323.2 UniProtKB/TrEMBL
  ENSMUST00000208040.2 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GP_PDE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLC-like_Pdiesterase_TIM-brl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56209 UniProtKB/Swiss-Prot
MGD MGI:1891827 ENTREZGENE
NCBI Gene 56209 ENTREZGENE
PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 UniProtKB/Swiss-Prot
  GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 UniProtKB/Swiss-Prot
  GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 UniProtKB/TrEMBL
  GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 UniProtKB/TrEMBL
Pfam GDPD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gde1 PhenoGen
PROSITE GP_PDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140LJJ4_MOUSE UniProtKB/TrEMBL
  A0A140LJK8_MOUSE UniProtKB/TrEMBL
  D3Z3E2_MOUSE UniProtKB/TrEMBL
  GDE1_MOUSE UniProtKB/Swiss-Prot
  Q3UBU4 ENTREZGENE
  Q9JL56 ENTREZGENE
UniProt Secondary Q3UBU4 UniProtKB/Swiss-Prot