APOD (apolipoprotein D) - Rat Genome Database

Name: APOD
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: APOD (apolipoprotein D) Homo sapiens

Analyze

Symbol:

APOD

Name:

apolipoprotein D

RGD ID:

737460

HGNC Page

HGNC

Description:

Exhibits cholesterol binding activity. Involved in several processes, including negative regulation of cell-matrix adhesion; negative regulation of macromolecule metabolic process; and negative regulation of protein import into nucleus. Localizes to extracellular space and perinuclear region of cytoplasm. Implicated in obesity and type 2 diabetes mellitus. Biomarker of Alzheimer's disease; gestational diabetes; and type 2 diabetes mellitus.

Type:

protein-coding

RefSeq Status:

REVIEWED

Also known as:

apo-D

RGD Orthologs

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Apod (apolipoprotein D)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Apod (apolipoprotein D)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Chinchilla lanigera (long-tailed chinchilla):	Apod (apolipoprotein D)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	APOD (apolipoprotein D)	NCBI	Ortholog
Canis lupus familiaris (dog):	APOD (apolipoprotein D)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Apod (apolipoprotein D)	NCBI	Ortholog
Sus scrofa (pig):	APOD (apolipoprotein D)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (African green monkey):	APOD (apolipoprotein D)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Apod (apolipoprotein D)	NCBI	Ortholog
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Apod (apolipoprotein D)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Apod (apolipoprotein D)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	apoda.1 (apolipoprotein Da, duplicate 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam\|ZFIN)
Danio rerio (zebrafish):	apodb (apolipoprotein Db)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam\|ZFIN)
Danio rerio (zebrafish):	apoda.2 (apolipoprotein Da, duplicate 2)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|TreeFam\|ZFIN)
Drosophila melanogaster (fruit fly):	CG31659	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	GLaz	Alliance	DIOPT (OrthoFinder\|PANTHER\|TreeFam)
Drosophila melanogaster (fruit fly):	NLaz	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	195,568,705 - 195,584,033 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	195,568,705 - 195,583,940 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	195,295,573 - 195,311,076 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	3	195,295,576 - 195,310,811 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	196,776,865 - 196,792,278 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	3	193,705,274 - 193,720,781 (-)	NCBI
Cytogenetic Map	3	q29	NCBI
HuRef	3	192,666,066 - 192,681,572 (-)	NCBI		HuRef
CHM1_1	3	195,258,489 - 195,273,995 (-)	NCBI		CHM1_1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (IEP)

Brain Injuries (ISO)

gestational diabetes (IEP)

high grade glioma (EXP)

Hypokinesia (EXP)

learning disability (EXP)

neurodegenerative disease (EXP)

obesity (IAGP)

status epilepticus (ISO)

Stroke (ISO)

type 2 diabetes mellitus (IAGP,IEP)

vasculogenic impotence (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (EXP)

17beta-estradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2-acetamidofluorene (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (EXP)

3-methyladenine (EXP)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (EXP)

6-propyl-2-thiouracil (ISO)

8-anilinonaphthalene-1-sulfonic acid (EXP)

afimoxifene (EXP)

aflatoxin B1 (EXP)

aflatoxin B2 (EXP)

alachlor (ISO)

all-trans-4-oxoretinoic acid (EXP)

all-trans-retinoic acid (EXP)

all-trans-retinol (EXP)

ammonium chloride (ISO)

anthra[1,9-cd]pyrazol-6(2H)-one (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (EXP)

bexarotene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

chloroquine (EXP)

cisplatin (EXP)

clozapine (ISO)

copper atom (EXP)

copper(0) (EXP)

coumestrol (EXP)

dexamethasone (EXP)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (ISO)

dichlorine (ISO)

dioxygen (EXP)

diuron (ISO)

doxorubicin (EXP,ISO)

fenvalerate (ISO)

flavonoids (ISO)

flurbiprofen (ISO)

folic acid (ISO)

formaldehyde (EXP)

fulvestrant (EXP)

furan (ISO)

genistein (EXP,ISO)

haloperidol (ISO)

indometacin (EXP)

isoprenaline (ISO)

medroxyprogesterone acetate (EXP)

methamphetamine (ISO)

methapyrilene (EXP)

methotrexate (ISO)

methylseleninic acid (EXP)

monosodium L-glutamate (ISO)

naphthalene (ISO)

nickel atom (EXP)

ozone (ISO)

paclitaxel (EXP)

paraquat (EXP,ISO)

PCB138 (ISO)

phencyclidine (ISO)

progesterone (EXP)

propanal (EXP)

raloxifene (EXP)

silicon dioxide (EXP)

sirolimus (EXP)

testosterone (ISO)

trichostatin A (EXP)

trimellitic anhydride (ISO)

troglitazone (ISO)

valproic acid (EXP,ISO)

vincristine (EXP)

vinyl carbamate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aging (IEA,ISO,NAS)

angiogenesis (NAS)

brain development (ISO,ISS)

glucose metabolic process (IDA)

intracellular receptor signaling pathway (TAS)

lipid metabolic process (IBA,IDA)

lipid transport (IEA)

negative regulation of cytokine production involved in inflammatory response (IDA)

negative regulation of focal adhesion assembly (IMP)

negative regulation of lipoprotein lipid oxidation (IDA,ISO)

negative regulation of monocyte chemotactic protein-1 production (IDA)

negative regulation of platelet-derived growth factor receptor signaling pathway (IDA)

negative regulation of protein import into nucleus (IDA)

negative regulation of smooth muscle cell proliferation (IDA)

negative regulation of smooth muscle cell-matrix adhesion (IMP)

negative regulation of T cell migration (IDA)

peripheral nervous system axon regeneration (ISO,ISS)

response to axon injury (ISO,ISS)

response to drug (ISO,ISS)

response to reactive oxygen species (IBA,IDA,ISO)

tissue regeneration (ISO,ISS)

Cellular Component

cytoplasm (IBA,ISO)

cytosolic ribosome (ISO,ISS)

dendrite (ISO,ISS)

endoplasmic reticulum (ISO,ISS)

extracellular exosome (HDA)

extracellular region (HDA,IEA,NAS,TAS)

extracellular space (HDA,IDA)

neuronal cell body (ISO,ISS)

perinuclear region of cytoplasm (IDA)

Molecular Function

cholesterol binding (IBA,IDA)

lipid binding (IEA)

lipid transporter activity (NAS)

protein binding (IPI)

References

References - curated


1.	Baker WA, etal., Diabet Med. 1994 Dec;11(10):947-52.
2.	Franz G, etal., J Neurochem. 1999 Oct;73(4):1615-25.
3.	GOA_HUMAN data from the GO Consortium
4.	Hansen L, etal., Biochem Biophys Res Commun. 2004 Oct 15;323(2):685-95.
5.	Lane DM and McConathy WJ, Pediatr Res. 1983 Feb;17(2):83-91.
6.	Lin CS, etal., Biochem Biophys Res Commun. 2001 Jul 13;285(2):565-9.
7.	Montpied P, etal., Epilepsy Res. 1999 Jun;35(2):135-46.
8.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	RGD automated import pipeline for gene-chemical interactions
10.	Rickhag M, etal., J Cereb Blood Flow Metab. 2008 Mar;28(3):551-62. Epub 2007 Sep 12.
11.	Terrisse L, etal., J Neurochem. 1998 Oct;71(4):1643-50.
12.	Vijayaraghavan S, etal., J Clin Endocrinol Metab. 1994 Aug;79(2):568-70.

Additional References at PubMed

PMID:2083249	PMID:2244881	PMID:2439269	PMID:2891117	PMID:3104518	PMID:3453108	PMID:6774335	PMID:7613477	PMID:7918467	PMID:8549691	PMID:8692868	PMID:8889548
PMID:9278274	PMID:10391209	PMID:11058760	PMID:11344130	PMID:11744388	PMID:12052480	PMID:12363390	PMID:12477932	PMID:12497622	PMID:12837283	PMID:12873803	PMID:14500696
PMID:14551159	PMID:14596852	PMID:14718574	PMID:14760718	PMID:15192024	PMID:15316799	PMID:15489334	PMID:15862967	PMID:15916898	PMID:16169070	PMID:16335952	PMID:16344560
PMID:16402085	PMID:16437381	PMID:16502470	PMID:16966838	PMID:17353931	PMID:17601350	PMID:17885669	PMID:18330697	PMID:18419796	PMID:18458334	PMID:18671953	PMID:18842892
PMID:18977241	PMID:18979643	PMID:19056867	PMID:19176353	PMID:19330472	PMID:19519777	PMID:19723339	PMID:19878569	PMID:19913121	PMID:19944460	PMID:20023409	PMID:20430392
PMID:20493910	PMID:20551380	PMID:20628086	PMID:20855565	PMID:21145461	PMID:21182205	PMID:21319273	PMID:21429623	PMID:21516116	PMID:21526344	PMID:21705670	PMID:21873635
PMID:22479522	PMID:23296401	PMID:23376485	PMID:23533145	PMID:23602568	PMID:23690001	PMID:23715769	PMID:23777559	PMID:23895740	PMID:24167586	PMID:24623722	PMID:25261976
PMID:25416956	PMID:25513803	PMID:25609649	PMID:25910212	PMID:25918162	PMID:25953740	PMID:26083030	PMID:26186194	PMID:26826316	PMID:26829325	PMID:27068509	PMID:27197790
PMID:27271124	PMID:27705803	PMID:27804940	PMID:28301514	PMID:28514442	PMID:28675297	PMID:28977666	PMID:29117568	PMID:29222871	PMID:29509190	PMID:29863498	PMID:29869155
PMID:30097533	PMID:30353968	PMID:30630053	PMID:31280863	PMID:31436131	PMID:31515488	PMID:31779197	PMID:32203420	PMID:32296183	PMID:32554047

Genomics

Candidate Gene Status

APOD is a candidate Gene for QTL BW262_H

Comparative Map Data

APOD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	195,568,705 - 195,584,033 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	195,568,705 - 195,583,940 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	195,295,573 - 195,311,076 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	3	195,295,576 - 195,310,811 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	196,776,865 - 196,792,278 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	3	193,705,274 - 193,720,781 (-)	NCBI
Cytogenetic Map	3	q29	NCBI
HuRef	3	192,666,066 - 192,681,572 (-)	NCBI		HuRef
CHM1_1	3	195,258,489 - 195,273,995 (-)	NCBI		CHM1_1

Apod
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	31,115,010 - 31,133,626 (-)	NCBI	GRCm39		mm39
GRCm38	16	31,296,192 - 31,314,808 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	31,296,192 - 31,314,808 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	31,296,278 - 31,314,682 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	16	31,215,939 - 31,234,343 (-)	NCBI			mm8
Celera	16	31,811,354 - 31,812,738 (-)	NCBI		Celera
Cytogenetic Map	16	B2	NCBI
cM Map	16	21.41	NCBI

Apod
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	69,431,261 - 69,452,306 (+)	NCBI
Rnor_6.0 Ensembl	11	72,705,129 - 72,726,301 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	11	72,705,204 - 72,726,263 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	11	75,781,496 - 75,804,020 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	11	68,851,395 - 68,872,467 (+)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

Apod
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	13,553,058 - 13,573,690 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	13,553,254 - 13,570,357 (+)	NCBI	ChiLan1.0	ChiLan1.0

APOD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	203,152,476 - 203,167,888 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	203,152,476 - 203,168,060 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	192,852,887 - 192,868,233 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

APOD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	33	30,488,135 - 30,509,289 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	33	30,490,149 - 30,504,804 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Apod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936833	260,798 - 277,060 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

APOD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	132,514,949 - 132,562,599 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	132,514,546 - 132,562,594 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	142,076,180 - 142,096,088 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

APOD
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	89,612,210 - 89,624,038 (-)	NCBI
ChlSab1.1 Ensembl	15	89,612,040 - 89,624,012 (-)	Ensembl

Apod
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	62,535,005 - 62,552,405 (+)	NCBI

Position Markers

D3S1305

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	195,310,991 - 195,311,194	UniSTS	GRCh37
GRCh37	3	195,311,005 - 195,311,194	UniSTS	GRCh37
Build 36	3	196,792,294 - 196,792,483	RGD	NCBI36
Celera	3	193,720,710 - 193,720,899	RGD
Celera	3	193,720,696 - 193,720,899	UniSTS
HuRef	3	192,681,501 - 192,681,690	UniSTS
HuRef	3	192,681,487 - 192,681,690	UniSTS
Marshfield Genetic Map	3	222.83	RGD
Genethon Genetic Map	3	225.1	UniSTS
TNG Radiation Hybrid Map	3	108349.0	UniSTS
deCODE Assembly Map	3	217.6	UniSTS
Stanford-G3 RH Map	3	8607.0	UniSTS
NCBI RH Map	3	2087.5	UniSTS
GeneMap99-G3 RH Map	3	9077.0	UniSTS

GDB:181196

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	195,295,624 - 195,295,804	UniSTS	GRCh37
Build 36	3	196,776,913 - 196,777,093	RGD	NCBI36
Celera	3	193,705,325 - 193,705,508	RGD
Cytogenetic Map	3	q26.2-qter	UniSTS
HuRef	3	192,666,117 - 192,666,301	UniSTS

WI-18936

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	195,295,629 - 195,295,903	UniSTS	GRCh37
Build 36	3	196,776,918 - 196,777,192	RGD	NCBI36
Celera	3	193,705,330 - 193,705,607	RGD
Cytogenetic Map	3	q26.2-qter	UniSTS
HuRef	3	192,666,122 - 192,666,400	UniSTS
GeneMap99-GB4 RH Map	3	726.38	UniSTS
Whitehead-RH Map	3	879.6	UniSTS

STS-W81076

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	195,295,589 - 195,295,813	UniSTS	GRCh37
Build 36	3	196,776,878 - 196,777,102	RGD	NCBI36
Celera	3	193,705,290 - 193,705,517	RGD
Cytogenetic Map	3	q26.2-qter	UniSTS
HuRef	3	192,666,082 - 192,666,310	UniSTS
GeneMap99-GB4 RH Map	3	737.22	UniSTS

STS-J02611

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	195,295,748 - 195,295,963	UniSTS	GRCh37
GRCh37	3	195,295,601 - 195,295,777	UniSTS	GRCh37
Build 36	3	196,776,890 - 196,777,066	RGD	NCBI36
Celera	3	193,705,452 - 193,705,667	UniSTS
Celera	3	193,705,302 - 193,705,481	RGD
Cytogenetic Map	3	q26.2-qter	UniSTS
HuRef	3	192,666,094 - 192,666,274	UniSTS
HuRef	3	192,666,245 - 192,666,460	UniSTS
TNG Radiation Hybrid Map	3	108338.0	UniSTS
GeneMap99-GB4 RH Map	3	726.38	UniSTS

RH69430

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	195,295,749 - 195,295,894	UniSTS	GRCh37
Build 36	3	196,777,038 - 196,777,183	RGD	NCBI36
Celera	3	193,705,453 - 193,705,598	RGD
Cytogenetic Map	3	q26.2-qter	UniSTS
HuRef	3	192,666,246 - 192,666,391	UniSTS
GeneMap99-GB4 RH Map	3	726.48	UniSTS

STS-J02611

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	3	q26.2-qter	UniSTS
TNG Radiation Hybrid Map	3	108338.0	UniSTS
GeneMap99-GB4 RH Map	3	726.48	UniSTS

D3S1305

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	3	q26.2-qter	UniSTS
Marshfield Genetic Map	3	222.83	UniSTS
Genethon Genetic Map	3	225.1	UniSTS
deCODE Assembly Map	3	217.6	UniSTS

D3S1305

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	3	q26.2-qter	UniSTS
TNG Radiation Hybrid Map	3	108349.0	UniSTS
Stanford-G3 RH Map	3	8607.0	UniSTS
NCBI RH Map	3	2087.5	UniSTS
GeneMap99-G3 RH Map	3	9077.0	UniSTS

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1024
Count of miRNA genes:	506
Interacting mature miRNAs:	551
Transcripts:	ENST00000343267, ENST00000421243, ENST00000453131, ENST00000458447, ENST00000463719
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

243

464

391

102

2241

357

753

133

405

104

947

1396

Medium

2033

1808

842

401

1900

1783

2892

186

1126

946

257

1390

Low

647

381

338

1023

339

184

112

111

Below cutoff

346

108

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB839003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC069213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH002605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK294523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK312090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC007402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ008672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BT019860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BT019861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU195270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU727194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR456838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR541773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA892855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	J02611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S80440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENST00000343267 ⟹ ENSP00000345179

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	3	195,568,705 - 195,583,940 (-)	Ensembl

RefSeq Acc Id:

ENST00000421243 ⟹ ENSP00000415235

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	3	195,568,908 - 195,583,940 (-)	Ensembl

RefSeq Acc Id:

ENST00000453131 ⟹ ENSP00000393076

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	3	195,569,022 - 195,583,940 (-)	Ensembl

RefSeq Acc Id:

ENST00000458447 ⟹ ENSP00000391597

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	3	195,568,753 - 195,583,954 (-)	Ensembl

RefSeq Acc Id:

ENST00000463719

RefSeq Status:

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p13 Ensembl	3	195,570,591 - 195,584,033 (-)	Ensembl

RefSeq Acc Id:

NM_001647 ⟹ NP_001638

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	195,568,705 - 195,583,940 (-)	NCBI
GRCh37	3	195,295,573 - 195,311,076 (-)	ENTREZGENE
Build 36	3	196,776,865 - 196,792,278 (-)	NCBI Archive
HuRef	3	192,666,066 - 192,681,572 (-)	ENTREZGENE
CHM1_1	3	195,258,489 - 195,273,995 (-)	NCBI

Sequence:

show sequence

TCTCTCTCGCACACATACCCACACACACACACACACACACACACGCGCGCGCGAAAACAATATC
TCATTTCTTCTTCAGGGAGCAGCTGTGAAGGAAATCGGGGGAGGAGGATGGACACAACATCCCA
TCTTTGTGTTTCGATACAGACTAAGCTTTTAGGCCAACCCTCCTGACTGGATGGGGGCGGCGGG
CGTGGCATGCATGAAAAGTAAACATCAGAGACCTGAAGAAGCTTATAAAATAGCTTGGGAGAGG
CCAGTCACCAAGACAGGCATCTCAAATCGGCTGATTCTGCATCTGGAAACTGCCTTCATCTTGA
AAGAAAAGCTCCAGGTCCCTTCTCCAGCCACCCAGCCCCAAGATGGTGATGCTGCTGCTGCTGC
TTTCCGCACTGGCTGGCCTCTTCGGTGCGGCAGAGGGACAAGCATTTCATCTTGGGAAGTGCCC
CAATCCTCCGGTGCAGGAGAATTTTGACGTGAATAAGTATCTCGGAAGATGGTACGAAATTGAG
AAGATCCCAACAACCTTTGAGAATGGACGCTGCATCCAGGCCAACTACTCACTAATGGAAAACG
GAAAGATCAAAGTGTTAAACCAGGAGTTGAGAGCTGATGGAACTGTGAATCAAATCGAAGGTGA
AGCCACCCCAGTTAACCTCACAGAGCCTGCCAAGCTGGAAGTTAAGTTTTCCTGGTTTATGCCA
TCGGCACCGTACTGGATCCTGGCCACCGACTATGAGAACTATGCCCTCGTGTATTCCTGTACCT
GCATCATCCAACTTTTTCACGTGGATTTTGCTTGGATCTTGGCAAGAAACCCTAATCTCCCTCC
AGAAACAGTGGACTCTCTAAAAAATATCCTGACTTCTAATAACATTGATGTCAAGAAAATGACG
GTCACAGACCAGGTGAACTGCCCCAAGCTCTCGTAACCAGGTTCTACAGGGAGGCTGCACCCAC
TCCATGTTACTTCTGCTTCGCTTTCCCCTACCCCCCCCCCATAAAGACAAACCAATCAACCACG
ACAAAGGAAGTTGACCTGAACATGTAACCATGCCCTACCCTGTTACCTTGCTAGCTGCAAAATA
AACTTGTTGCTGACCTGCTGTGCTCGCAGTAGATTCCAAGTTAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001638	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA51764	(Get FASTA)	NCBI Sequence Viewer
	AAB35919	(Get FASTA)	NCBI Sequence Viewer
	AAB59517	(Get FASTA)	NCBI Sequence Viewer
	AAH07402	(Get FASTA)	NCBI Sequence Viewer
	AAV38663	(Get FASTA)	NCBI Sequence Viewer
	AAV38664	(Get FASTA)	NCBI Sequence Viewer
	BAG35026	(Get FASTA)	NCBI Sequence Viewer
	BAG57734	(Get FASTA)	NCBI Sequence Viewer
	CAG33119	(Get FASTA)	NCBI Sequence Viewer
	CAG46572	(Get FASTA)	NCBI Sequence Viewer
	EAW78023	(Get FASTA)	NCBI Sequence Viewer
	EAW78024	(Get FASTA)	NCBI Sequence Viewer
	P05090	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001638 ⟸ NM_001647
- Peptide Label:	precursor
- UniProtKB:	P05090 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQA NYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWILATDYENY ALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKLS hide sequence

RefSeq Acc Id:

ENSP00000393076 ⟸ ENST00000453131

RefSeq Acc Id:

ENSP00000391597 ⟸ ENST00000458447

RefSeq Acc Id:

ENSP00000415235 ⟸ ENST00000421243

RefSeq Acc Id:

ENSP00000345179 ⟸ ENST00000343267

Protein Domains

Lipocln_cytosolic_FA-bd_dom

Promoters

RGD ID:

6866664

Promoter ID:

EPDNEW_H6496

Type:

initiation region

Name:

APOD_1

Description:

apolipoprotein D

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	195,583,940 - 195,584,000	EPDNEW

RGD ID:

6851370

Promoter ID:

EP73483

Type:

initiation region

Name:

HS_APOD

Description:

Apolipoprotein D.

SO ACC ID:

SO:0000170

Source:

EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

NEDO full length human cDNA sequencing project.; Oligo-capping

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	3	196,792,100 - 196,792,160	EPD

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 3q27.2-29(chr3:185485849-198110178)x1	copy number loss	See cases [RCV000051608]	Chr3:185485849..198110178 [GRCh38] Chr3:185203637..197837049 [GRCh37] Chr3:186686331..199321446 [NCBI36] Chr3:3q27.2-29	pathogenic
GRCh38/hg38 3q24-29(chr3:147521892-198096565)x3	copy number gain	See cases [RCV000051725]	Chr3:147521892..198096565 [GRCh38] Chr3:147239679..197823436 [GRCh37] Chr3:148722369..199307833 [NCBI36] Chr3:3q24-29	pathogenic
GRCh38/hg38 3q25.31-29(chr3:157293378-198134727)x3	copy number gain	See cases [RCV000051726]	Chr3:157293378..198134727 [GRCh38] Chr3:157011167..197861598 [GRCh37] Chr3:158493861..199345995 [NCBI36] Chr3:3q25.31-29	pathogenic
GRCh38/hg38 3q26.32-29(chr3:178411707-198110319)x3	copy number gain	See cases [RCV000051736]	Chr3:178411707..198110319 [GRCh38] Chr3:178129495..197837190 [GRCh37] Chr3:179612189..199321587 [NCBI36] Chr3:3q26.32-29	pathogenic
GRCh38/hg38 3q27.2-29(chr3:185920880-198110319)x3	copy number gain	See cases [RCV000051738]	Chr3:185920880..198110319 [GRCh38] Chr3:185638668..197837190 [GRCh37] Chr3:187121362..199321587 [NCBI36] Chr3:3q27.2-29	pathogenic
GRCh38/hg38 3q28-29(chr3:189265371-198110178)x3	copy number gain	See cases [RCV000051739]	Chr3:189265371..198110178 [GRCh38] Chr3:188983160..197837049 [GRCh37] Chr3:190465854..199321446 [NCBI36] Chr3:3q28-29	pathogenic
GRCh38/hg38 3q28-29(chr3:190667663-198110178)x3	copy number gain	See cases [RCV000051740]	Chr3:190667663..198110178 [GRCh38] Chr3:190385452..197837049 [GRCh37] Chr3:191868146..199321446 [NCBI36] Chr3:3q28-29	pathogenic
GRCh38/hg38 3q29(chr3:193917490-198110319)x3	copy number gain	See cases [RCV000051741]	Chr3:193917490..198110319 [GRCh38] Chr3:193635279..197837190 [GRCh37] Chr3:195117973..199321587 [NCBI36] Chr3:3q29	pathogenic
GRCh38/hg38 3q29(chr3:194424496-198168758)x3	copy number gain	See cases [RCV000051742]	Chr3:194424496..198168758 [GRCh38] Chr3:194145225..197895629 [GRCh37] Chr3:195626514..199380026 [NCBI36] Chr3:3q29	pathogenic
GRCh38/hg38 3q22.3-29(chr3:137126982-198110178)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]\|See cases [RCV000051723]	Chr3:137126982..198110178 [GRCh38] Chr3:136845824..197837049 [GRCh37] Chr3:138328514..199321446 [NCBI36] Chr3:3q22.3-29	pathogenic
NM_001647.3(APOD):c.334+239G>C	single nucleotide variant	Lung cancer [RCV000093443]	Chr3:195571038 [GRCh38] Chr3:195297909 [GRCh37] Chr3:3q29	uncertain significance
NM_001647.3(APOD):c.124-2165C>G	single nucleotide variant	Lung cancer [RCV000093444]	Chr3:195576136 [GRCh38] Chr3:195303007 [GRCh37] Chr3:3q29	uncertain significance
NM_001647.3(APOD):c.-34-1226G>T	single nucleotide variant	Lung cancer [RCV000093445]	Chr3:195580721 [GRCh38] Chr3:195307592 [GRCh37] Chr3:3q29	uncertain significance
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3	copy number gain	See cases [RCV000134948]	Chr3:103426882..198110178 [GRCh38] Chr3:103145726..197837049 [GRCh37] Chr3:104628416..199321446 [NCBI36] Chr3:3q13.11-29	pathogenic
GRCh38/hg38 3q29(chr3:194338534-197693741)x1	copy number loss	See cases [RCV000136517]	Chr3:194338534..197693741 [GRCh38] Chr3:194059263..197420612 [GRCh37] Chr3:195540958..198905009 [NCBI36] Chr3:3q29	pathogenic\|uncertain significance
GRCh38/hg38 3q29(chr3:195147600-195711857)x3	copy number gain	See cases [RCV000136583]	Chr3:195147600..195711857 [GRCh38] Chr3:194868329..195438728 [GRCh37] Chr3:196349618..196924399 [NCBI36] Chr3:3q29	uncertain significance
GRCh38/hg38 3q29(chr3:195537179-195732718)x3	copy number gain	See cases [RCV000135914]	Chr3:195537179..195732718 [GRCh38] Chr3:195263979..195459589 [GRCh37] Chr3:196745268..196945260 [NCBI36] Chr3:3q29	benign
GRCh38/hg38 3q26.2-29(chr3:168167568-198110178)x3	copy number gain	See cases [RCV000137106]	Chr3:168167568..198110178 [GRCh38] Chr3:167885356..197837049 [GRCh37] Chr3:169368050..199321446 [NCBI36] Chr3:3q26.2-29	pathogenic
GRCh38/hg38 3q29(chr3:195537187-195736631)x3	copy number gain	See cases [RCV000136843]	Chr3:195537187..195736631 [GRCh38] Chr3:195263987..195463502 [GRCh37] Chr3:196745276..196949173 [NCBI36] Chr3:3q29	benign
GRCh38/hg38 3q26.32-29(chr3:176439911-198118383)x3	copy number gain	See cases [RCV000138009]	Chr3:176439911..198118383 [GRCh38] Chr3:176157699..197845254 [GRCh37] Chr3:177640393..199329651 [NCBI36] Chr3:3q26.32-29	pathogenic\|likely benign
GRCh38/hg38 3q29(chr3:192752937-198118383)x3	copy number gain	See cases [RCV000137827]	Chr3:192752937..198118383 [GRCh38] Chr3:192470726..197845254 [GRCh37] Chr3:193953420..199329651 [NCBI36] Chr3:3q29	pathogenic
GRCh38/hg38 3q26.32-29(chr3:176168525-198118383)x3	copy number gain	See cases [RCV000138662]	Chr3:176168525..198118383 [GRCh38] Chr3:175886313..197845254 [GRCh37] Chr3:177369007..199329651 [NCBI36] Chr3:3q26.32-29	pathogenic
GRCh38/hg38 3q29(chr3:194296197-198110198)x3	copy number gain	See cases [RCV000138492]	Chr3:194296197..198110198 [GRCh38] Chr3:194013986..197837069 [GRCh37] Chr3:195496680..199321466 [NCBI36] Chr3:3q29	pathogenic
GRCh38/hg38 3q29(chr3:195537024-195730806)x3	copy number gain	See cases [RCV000138633]	Chr3:195537024..195730806 [GRCh38] Chr3:195263824..195457677 [GRCh37] Chr3:196745113..196943348 [NCBI36] Chr3:3q29	likely benign
GRCh38/hg38 3q29(chr3:195537024-195730806)x1	copy number loss	See cases [RCV000138634]	Chr3:195537024..195730806 [GRCh38] Chr3:195263824..195457677 [GRCh37] Chr3:196745113..196943348 [NCBI36] Chr3:3q29	likely benign
GRCh38/hg38 3q25.1-29(chr3:152100512-198118383)x3	copy number gain	See cases [RCV000139435]	Chr3:152100512..198118383 [GRCh38] Chr3:151818301..197845254 [GRCh37] Chr3:153300991..199329651 [NCBI36] Chr3:3q25.1-29	pathogenic
GRCh38/hg38 3q25.31-29(chr3:156321878-198113452)x3	copy number gain	See cases [RCV000140849]	Chr3:156321878..198113452 [GRCh38] Chr3:156039667..197840323 [GRCh37] Chr3:157522361..199324720 [NCBI36] Chr3:3q25.31-29	pathogenic
GRCh38/hg38 3q25.31-29(chr3:156118441-198125115)x3	copy number gain	See cases [RCV000142310]	Chr3:156118441..198125115 [GRCh38] Chr3:155836230..197851986 [GRCh37] Chr3:157318924..199336383 [NCBI36] Chr3:3q25.31-29	pathogenic
GRCh38/hg38 3q26.1-29(chr3:166137209-198125115)x3	copy number gain	See cases [RCV000143694]	Chr3:166137209..198125115 [GRCh38] Chr3:165854997..197851986 [GRCh37] Chr3:167337691..199336383 [NCBI36] Chr3:3q26.1-29	pathogenic
GRCh38/hg38 3q29(chr3:193704605-198125115)x3	copy number gain	See cases [RCV000143501]	Chr3:193704605..198125115 [GRCh38] Chr3:193422394..197851986 [GRCh37] Chr3:194905088..199336383 [NCBI36] Chr3:3q29	pathogenic
GRCh37/hg19 3q25.32-29(chr3:158980631-197766890)x3	copy number gain	See cases [RCV000447464]	Chr3:158980631..197766890 [GRCh37] Chr3:3q25.32-29	pathogenic
GRCh37/hg19 3q26.33-29(chr3:181911498-197851986)x4	copy number gain	See cases [RCV000446732]	Chr3:181911498..197851986 [GRCh37] Chr3:3q26.33-29	pathogenic
GRCh37/hg19 3q25.2-29(chr3:152356847-197851986)x3	copy number gain	See cases [RCV000448608]	Chr3:152356847..197851986 [GRCh37] Chr3:3q25.2-29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3	copy number gain	See cases [RCV000511055]	Chr3:61892..197851986 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)	copy number gain	See cases [RCV000512358]	Chr3:61892..197851986 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3q26.33-29(chr3:182539234-197851986)x3	copy number gain	not provided [RCV000682336]	Chr3:182539234..197851986 [GRCh37] Chr3:3q26.33-29	pathogenic
GRCh37/hg19 3q27.1-29(chr3:184003967-197851986)x3	copy number gain	not provided [RCV000682339]	Chr3:184003967..197851986 [GRCh37] Chr3:3q27.1-29	pathogenic
GRCh37/hg19 3q28-29(chr3:187913567-197851986)x3	copy number gain	not provided [RCV000682344]	Chr3:187913567..197851986 [GRCh37] Chr3:3q28-29	pathogenic
GRCh37/hg19 3q28-29(chr3:191593619-197851986)x3	copy number gain	not provided [RCV000682346]	Chr3:191593619..197851986 [GRCh37] Chr3:3q28-29	pathogenic
GRCh37/hg19 3q27.3-29(chr3:186374365-197851986)x3	copy number gain	not provided [RCV000682341]	Chr3:186374365..197851986 [GRCh37] Chr3:3q27.3-29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3	copy number gain	not provided [RCV000742138]	Chr3:61495..197838262 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3	copy number gain	not provided [RCV000742133]	Chr3:60174..197948027 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3q26.31-29(chr3:173281266-197838262)x3	copy number gain	not provided [RCV000742968]	Chr3:173281266..197838262 [GRCh37] Chr3:3q26.31-29	pathogenic
GRCh37/hg19 3q27.3-29(chr3:186374671-197838262)x3	copy number gain	not provided [RCV000743037]	Chr3:186374671..197838262 [GRCh37] Chr3:3q27.3-29	pathogenic
GRCh37/hg19 3q28-29(chr3:189101446-197838262)x1	copy number loss	not provided [RCV000743049]	Chr3:189101446..197838262 [GRCh37] Chr3:3q28-29	pathogenic
NM_001647.4(APOD):c.44T>C (p.Phe15Ser)	single nucleotide variant	not provided [RCV000948671]	Chr3:195579418 [GRCh38] Chr3:195306289 [GRCh37] Chr3:3q29	benign
NM_001647.4(APOD):c.165C>A (p.Thr55=)	single nucleotide variant	not provided [RCV000925461]	Chr3:195573930 [GRCh38] Chr3:195300801 [GRCh37] Chr3:3q29	likely benign
GRCh37/hg19 3q29(chr3:195279196-196022437)x3	copy number gain	not provided [RCV000846857]	Chr3:195279196..196022437 [GRCh37] Chr3:3q29	uncertain significance
GRCh37/hg19 3q28-29(chr3:188386566-197838262)x3	copy number gain	See cases [RCV000790566]	Chr3:188386566..197838262 [GRCh37] Chr3:3q28-29	pathogenic
GRCh37/hg19 3q29(chr3:195068028-197851986)x3	copy number gain	not provided [RCV001259831]	Chr3:195068028..197851986 [GRCh37] Chr3:3q29	pathogenic
GRCh37/hg19 3q29(chr3:194498718-196196789)x1	copy number loss	not provided [RCV001270643]	Chr3:194498718..196196789 [GRCh37] Chr3:3q29	uncertain significance

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:612	AgrOrtholog
COSMIC	APOD	COSMIC
Ensembl Genes	ENSG00000189058	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSP00000345179	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSP00000391597	UniProtKB/TrEMBL
	ENSP00000393076	UniProtKB/TrEMBL
	ENSP00000415235	UniProtKB/TrEMBL
Ensembl Transcript	ENST00000343267	ENTREZGENE, UniProtKB/Swiss-Prot
	ENST00000421243	UniProtKB/TrEMBL
	ENST00000453131	UniProtKB/TrEMBL
	ENST00000458447	UniProtKB/TrEMBL
Gene3D-CATH	2.40.128.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx	ENSG00000189058	GTEx
HGNC ID	HGNC:612	ENTREZGENE
Human Proteome Map	APOD	Human Proteome Map
InterPro	ApoD_vertbrte	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ApolipopD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Calycin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lipocalin_ApoD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lipocalin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lipocln_cytosolic_FA-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:347	UniProtKB/Swiss-Prot
NCBI Gene	347	ENTREZGENE
OMIM	107740	OMIM
Pfam	Lipocalin_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA24900	PharmGKB
PIRSF	Lipocalin_ApoD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	APODVERTBRTE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	APOLIPOPROTD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	LIPOCALIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50814	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	APOD_HUMAN	UniProtKB/Swiss-Prot
	C9JF17_HUMAN	UniProtKB/TrEMBL
	C9JX71_HUMAN	UniProtKB/TrEMBL
	F8WBT9_HUMAN	UniProtKB/TrEMBL
	P05090	ENTREZGENE
UniProt Secondary	B2R579	UniProtKB/Swiss-Prot
	D3DNW6	UniProtKB/Swiss-Prot
	Q6IBG6	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD