Gria3 (glutamate receptor, ionotropic, AMPA3 (alpha 3)) - Rat Genome Database

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Gene: Gria3 (glutamate receptor, ionotropic, AMPA3 (alpha 3)) Mus musculus
Analyze
Symbol: Gria3
Name: glutamate receptor, ionotropic, AMPA3 (alpha 3)
RGD ID: 737337
MGI Page MGI
Description: Enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Acts upstream of or within chemical postsynaptic transmission; monoatomic ion transmembrane transport; and regulation of postsynaptic membrane potential. Located in postsynaptic membrane. Part of AMPA glutamate receptor complex. Is active in parallel fiber to Purkinje cell synapse. Is expressed in several structures, including adrenal gland; central nervous system; eye; genitourinary system; and organ of Corti. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 94. Orthologous to human GRIA3 (glutamate ionotropic receptor AMPA type subunit 3).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 2900064I19Rik; AMPA-selective glutamate receptor 3; cAMP-dependent Rap1 guanine-nucleotide exchange factor; Glu; GluA3; Glur; Glur-3; GluR-C; GluR-K3; Glur3; Gluralpha3; glutamate receptor 3; glutamate receptor channel alpha3 subunit; glutamate receptor ionotropic, AMPA 3; glutamate receptor subunit 3; KIAA4184; mKIAA4184
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X40,489,351 - 40,767,478 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX40,489,731 - 40,767,478 (+)EnsemblGRCm39 Ensembl
GRCm38X41,400,819 - 41,678,601 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX41,400,854 - 41,678,601 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X38,754,481 - 39,031,778 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X37,646,141 - 37,923,227 (+)NCBIMGSCv36mm8
CeleraX28,988,899 - 29,264,344 (+)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX23.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(1->4)-beta-D-glucan  (EXP)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
1-nitropropane  (ISO)
17beta-estradiol  (ISO)
2,3,4,7,8-Pentachlorodibenzofuran  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-diaminotoluene  (ISO)
2,6-diaminotoluene  (ISO)
2-acetamidofluorene  (EXP,ISO)
2-nitro-p-phenylenediamine  (ISO)
2-nitrofluorene  (ISO)
2-nitropropane  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-(5-fluorouracil-1-yl)-L-alanine  (EXP)
3-methylcholanthrene  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-acetylaminofluorene  (ISO)
4-nitro-1,2-phenylenediamine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldrin  (EXP)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
ammonium chloride  (ISO)
anthracen-2-amine  (ISO)
arotinoid acid  (ISO)
arsenite(3-)  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzoates  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP)
carbonyl sulfide  (ISO)
cefaloridine  (ISO)
celecoxib  (EXP)
CGP 52608  (ISO)
CHIR 99021  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (EXP)
cisplatin  (EXP)
citalopram  (ISO)
Citreoviridin  (EXP)
cocaine  (EXP,ISO)
cortisol  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
decabromodiphenyl ether  (ISO)
Diacetoxyscirpenol  (EXP)
dibenzofurans  (EXP)
dichloroacetic acid  (EXP)
diethyl maleate  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
etoposide  (EXP)
fenvalerate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
geldanamycin  (ISO)
Heliotrine  (ISO)
inulin  (EXP)
kainic acid  (EXP,ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP,ISO)
lipopolysaccharide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
mercury dibromide  (ISO)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (EXP)
morphine  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (ISO)
Nor-9-carboxy-delta9-THC  (ISO)
olanzapine  (ISO)
orphenadrine  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (ISO)
pyrethrins  (ISO)
quercetin 3-O-beta-D-glucofuranoside  (ISO)
quercetin 3-O-beta-D-glucopyranoside  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
sodium arsenite  (EXP)
sterigmatocystin  (ISO)
sulforaphane  (EXP)
testosterone  (ISO)
thalidomide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
tremolite asbestos  (EXP)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
valproic acid  (ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. High-resolution quantitative trait locus mapping for body weight in mice by recombinant progeny testing. Liu X, etal., Genet Res 2001 Apr;77(2):191-7.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1717158   PMID:7953292   PMID:7992055   PMID:8464923   PMID:8889548   PMID:9016303   PMID:9051806   PMID:9221927   PMID:9482932   PMID:9651535   PMID:9852133   PMID:10349636  
PMID:10407040   PMID:10531433   PMID:10688364   PMID:11042159   PMID:11076861   PMID:11471062   PMID:11826145   PMID:12414093   PMID:12477932   PMID:12588844   PMID:12692557   PMID:12700243  
PMID:12848940   PMID:14561864   PMID:14687553   PMID:14730302   PMID:14980377   PMID:15145078   PMID:15264227   PMID:15619115   PMID:15797551   PMID:16129400   PMID:16141072   PMID:16141073  
PMID:16291784   PMID:16436610   PMID:16733060   PMID:16987237   PMID:17093100   PMID:17472701   PMID:17828255   PMID:17928436   PMID:18195348   PMID:18198335   PMID:18287559   PMID:18312590  
PMID:18316356   PMID:18329113   PMID:19004011   PMID:19063943   PMID:19126596   PMID:19144833   PMID:19409270   PMID:19453627   PMID:19477188   PMID:19799774   PMID:20163115   PMID:20185686  
PMID:21135237   PMID:21215292   PMID:21248103   PMID:21248105   PMID:21267068   PMID:21368048   PMID:21589880   PMID:21677750   PMID:21690196   PMID:21873635   PMID:22090494   PMID:22285418  
PMID:22534482   PMID:22632720   PMID:22723691   PMID:22937151   PMID:23217150   PMID:23235828   PMID:23359859   PMID:23385583   PMID:23664612   PMID:23864664   PMID:24355921   PMID:24952961  
PMID:25218043   PMID:25337787   PMID:25979088   PMID:26585043   PMID:26932439   PMID:27076426   PMID:27507650   PMID:27708157   PMID:28007900   PMID:28011083   PMID:28103481   PMID:28194005  
PMID:28290985   PMID:28397107   PMID:28608780   PMID:28630296   PMID:28671696   PMID:28706196   PMID:28762944   PMID:29016847   PMID:29163060   PMID:29180434   PMID:29581259   PMID:30057205  
PMID:30561331   PMID:30713523   PMID:30931998   PMID:31231192   PMID:31321879   PMID:31492534   PMID:31992779   PMID:32027825   PMID:32051325   PMID:32185508   PMID:32492419   PMID:32560809  
PMID:32581705   PMID:32640232   PMID:32831170   PMID:33015071   PMID:33981040   PMID:34426577   PMID:34455539   PMID:35746896   PMID:35858542   PMID:36070750   PMID:36223737   PMID:36417873  
PMID:36429079   PMID:36604605   PMID:37876813  


Genomics

Comparative Map Data
Gria3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X40,489,351 - 40,767,478 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX40,489,731 - 40,767,478 (+)EnsemblGRCm39 Ensembl
GRCm38X41,400,819 - 41,678,601 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX41,400,854 - 41,678,601 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X38,754,481 - 39,031,778 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X37,646,141 - 37,923,227 (+)NCBIMGSCv36mm8
CeleraX28,988,899 - 29,264,344 (+)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX23.19NCBI
GRIA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X123,184,278 - 123,490,915 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX123,184,153 - 123,490,915 (+)EnsemblGRCh38hg38GRCh38
GRCh37X122,318,131 - 122,624,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X122,145,777 - 122,452,447 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X122,043,692 - 122,064,066NCBI
CeleraX122,704,041 - 123,010,712 (+)NCBICelera
Cytogenetic MapXq25NCBI
HuRefX111,704,466 - 112,009,621 (+)NCBIHuRef
CHM1_1X122,228,980 - 122,535,894 (+)NCBICHM1_1
T2T-CHM13v2.0X121,492,985 - 121,799,656 (+)NCBIT2T-CHM13v2.0
Gria3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X125,103,975 - 125,369,690 (+)NCBIGRCr8
mRatBN7.2X120,238,515 - 120,504,106 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX120,238,534 - 120,504,096 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX122,364,427 - 122,627,112 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X125,885,906 - 126,148,553 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X123,482,751 - 123,745,405 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X127,561,843 - 127,829,763 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX127,562,660 - 127,829,753 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X127,655,758 - 127,922,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X3,452,523 - 3,718,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X3,460,084 - 3,724,042 (-)NCBI
CeleraX119,369,614 - 119,631,774 (+)NCBICelera
Cytogenetic MapXq35NCBI
Gria3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547311,281,379 - 11,574,907 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547311,283,642 - 11,574,836 (-)NCBIChiLan1.0ChiLan1.0
GRIA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X122,656,097 - 122,963,692 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X122,659,758 - 122,967,298 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X112,380,229 - 112,687,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X122,562,571 - 122,870,130 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX122,562,330 - 122,870,130 (+)Ensemblpanpan1.1panPan2
GRIA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X94,729,828 - 95,006,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX94,730,943 - 95,004,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX80,782,519 - 81,064,503 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X96,499,224 - 96,776,045 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX96,499,201 - 96,776,041 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X93,943,627 - 94,219,547 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X95,702,771 - 95,978,497 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X95,485,249 - 95,767,174 (+)NCBIUU_Cfam_GSD_1.0
Gria3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X93,664,315 - 93,937,477 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364797,050,016 - 7,323,196 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364797,050,018 - 7,323,047 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX100,827,461 - 101,109,207 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X100,827,293 - 101,109,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X115,591,526 - 115,873,477 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606535,883,967 - 36,191,270 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gria3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247971,775,071 - 2,169,286 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247971,775,105 - 2,167,651 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gria3
6095 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3519
Count of miRNA genes:873
Interacting mature miRNAs:1229
Transcripts:ENSMUST00000076349, ENSMUST00000115103, ENSMUST00000124169, ENSMUST00000126843, ENSMUST00000128197, ENSMUST00000139965, ENSMUST00000148212, ENSMUST00000156721, ENSMUST00000165288
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse

Markers in Region
Gria3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA3.3-A4UniSTS
cM MapX13.3UniSTS
DXMit58  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X41,560,036 - 41,560,235UniSTSGRCm38
MGSCv37X38,913,213 - 38,913,412UniSTSGRCm37
CeleraX29,146,263 - 29,146,464UniSTS
Cytogenetic MapXA3.3-A4UniSTS
cM MapX UniSTS
Whitehead_YACX UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001281929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB022342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB079072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB102775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB102776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF201351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF483494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF483495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC076584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY266507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ107988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M76438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000076349   ⟹   ENSMUSP00000075687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,490,181 - 40,767,478 (+)Ensembl
GRCm38.p6 EnsemblX41,401,304 - 41,678,601 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115103   ⟹   ENSMUSP00000110755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,490,005 - 40,765,462 (+)Ensembl
GRCm38.p6 EnsemblX41,401,128 - 41,676,585 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124169   ⟹   ENSMUSP00000117766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,491,617 - 40,567,538 (+)Ensembl
GRCm38.p6 EnsemblX41,402,740 - 41,478,661 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,699,074 - 40,710,139 (+)Ensembl
GRCm38.p6 EnsemblX41,610,197 - 41,621,262 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,489,731 - 40,701,976 (+)Ensembl
GRCm38.p6 EnsemblX41,400,854 - 41,613,099 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139965   ⟹   ENSMUSP00000116381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,490,313 - 40,767,475 (+)Ensembl
GRCm38.p6 EnsemblX41,401,436 - 41,678,598 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,490,359 - 40,702,431 (+)Ensembl
GRCm38.p6 EnsemblX41,401,482 - 41,613,554 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,490,275 - 40,765,469 (+)Ensembl
GRCm38.p6 EnsemblX41,401,398 - 41,676,592 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165288   ⟹   ENSMUSP00000131523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX40,490,442 - 40,761,341 (+)Ensembl
GRCm38.p6 EnsemblX41,401,565 - 41,672,464 (+)Ensembl
RefSeq Acc Id: NM_001281929   ⟹   NP_001268858
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X40,490,275 - 40,767,478 (+)NCBI
GRCm38X41,401,398 - 41,678,601 (+)NCBI
CeleraX28,988,896 - 29,264,344 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290451   ⟹   NP_001277380
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X40,490,275 - 40,767,478 (+)NCBI
GRCm38X41,401,398 - 41,678,601 (+)NCBI
CeleraX28,988,896 - 29,264,344 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001358361   ⟹   NP_001345290
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X40,489,696 - 40,767,478 (+)NCBI
GRCm38X41,400,819 - 41,678,601 (+)NCBI
Sequence:
RefSeq Acc Id: NM_016886   ⟹   NP_058582
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X40,490,275 - 40,767,478 (+)NCBI
GRCm38X41,401,398 - 41,678,601 (+)NCBI
MGSCv37X38,754,481 - 39,031,778 (+)RGD
CeleraX28,988,896 - 29,264,344 (+)NCBI
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104053
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X40,490,275 - 40,767,478 (+)NCBI
GRCm38X41,401,398 - 41,678,601 (+)NCBI
CeleraX28,988,896 - 29,264,344 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318545   ⟹   XP_017174034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X40,489,351 - 40,767,478 (+)NCBI
GRCm38X41,401,119 - 41,678,334 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318546   ⟹   XP_017174035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X40,489,995 - 40,767,478 (+)NCBI
GRCm38X41,401,118 - 41,678,601 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318547   ⟹   XP_017174036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X40,489,351 - 40,715,867 (+)NCBI
GRCm38X41,401,118 - 41,626,990 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001268858 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277380 (Get FASTA)   NCBI Sequence Viewer  
  NP_001345290 (Get FASTA)   NCBI Sequence Viewer  
  NP_058582 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174034 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174035 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174036 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF23963 (Get FASTA)   NCBI Sequence Viewer  
  AAH86678 (Get FASTA)   NCBI Sequence Viewer  
  AAI29856 (Get FASTA)   NCBI Sequence Viewer  
  AAI29857 (Get FASTA)   NCBI Sequence Viewer  
  AAL90768 (Get FASTA)   NCBI Sequence Viewer  
  AAL90769 (Get FASTA)   NCBI Sequence Viewer  
  BAA37124 (Get FASTA)   NCBI Sequence Viewer  
  BAD90527 (Get FASTA)   NCBI Sequence Viewer  
  BAE06153 (Get FASTA)   NCBI Sequence Viewer  
  BAE22396 (Get FASTA)   NCBI Sequence Viewer  
  BAE34208 (Get FASTA)   NCBI Sequence Viewer  
  BAE36222 (Get FASTA)   NCBI Sequence Viewer  
  BAI44621 (Get FASTA)   NCBI Sequence Viewer  
  BAI44622 (Get FASTA)   NCBI Sequence Viewer  
  EDL29035 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000075687
  ENSMUSP00000075687.6
  ENSMUSP00000110755
  ENSMUSP00000110755.3
  ENSMUSP00000116381.2
  ENSMUSP00000117766.2
  ENSMUSP00000131523
  ENSMUSP00000131523.2
GenBank Protein Q9Z2W9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058582   ⟸   NM_016886
- Peptide Label: isoform a precursor
- UniProtKB: Q9Z2W9 (UniProtKB/Swiss-Prot),   A2VDF4 (UniProtKB/Swiss-Prot),   Q5DTJ0 (UniProtKB/Swiss-Prot),   Q0VGS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268858   ⟸   NM_001281929
- Peptide Label: isoform a precursor
- UniProtKB: Q9Z2W9 (UniProtKB/Swiss-Prot),   A2VDF4 (UniProtKB/Swiss-Prot),   Q5DTJ0 (UniProtKB/Swiss-Prot),   Q0VGS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277380   ⟸   NM_001290451
- Peptide Label: isoform b precursor
- UniProtKB: B0QZW1 (UniProtKB/TrEMBL),   C9K0Y5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174035   ⟸   XM_017318546
- Peptide Label: isoform X2
- UniProtKB: B0QZW1 (UniProtKB/TrEMBL),   C9K0Y5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174034   ⟸   XM_017318545
- Peptide Label: isoform X1
- UniProtKB: A2VDF4 (UniProtKB/Swiss-Prot),   Q5DTJ0 (UniProtKB/Swiss-Prot),   Q9Z2W9 (UniProtKB/Swiss-Prot),   Q0VGS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174036   ⟸   XM_017318547
- Peptide Label: isoform X3
- UniProtKB: Q3TTV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345290   ⟸   NM_001358361
- Peptide Label: isoform a precursor
- UniProtKB: Q9Z2W9 (UniProtKB/Swiss-Prot),   A2VDF4 (UniProtKB/Swiss-Prot),   Q5DTJ0 (UniProtKB/Swiss-Prot),   Q0VGS8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000116381   ⟸   ENSMUST00000139965
RefSeq Acc Id: ENSMUSP00000117766   ⟸   ENSMUST00000124169
RefSeq Acc Id: ENSMUSP00000131523   ⟸   ENSMUST00000165288
RefSeq Acc Id: ENSMUSP00000075687   ⟸   ENSMUST00000076349
RefSeq Acc Id: ENSMUSP00000110755   ⟸   ENSMUST00000115103
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2W9-F1-model_v2 AlphaFold Q9Z2W9 1-888 view protein structure

Promoters
RGD ID:6845808
Promoter ID:MM_KWN:60120
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000115103,   NM_016886,   OTTMUST00000077887,   OTTMUST00000077888,   OTTMUST00000077891,   UC009TAJ.1,   UC009TAL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X38,753,636 - 38,754,637 (+)MPROMDB
RGD ID:6845807
Promoter ID:MM_KWN:60121
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000077892
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X38,755,226 - 38,756,087 (+)MPROMDB
RGD ID:13680354
Promoter ID:EPDNEW_M24326
Type:initiation region
Name:Gria3_2
Description:Mus musculus glutamate receptor, ionotropic, AMPA3 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24327  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X41,400,873 - 41,400,933EPDNEW
RGD ID:13680356
Promoter ID:EPDNEW_M24327
Type:initiation region
Name:Gria3_1
Description:Mus musculus glutamate receptor, ionotropic, AMPA3 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24326  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X41,401,398 - 41,401,458EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95810 AgrOrtholog
Ensembl Genes ENSMUSG00000001986 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076349 ENTREZGENE
  ENSMUST00000076349.12 UniProtKB/Swiss-Prot
  ENSMUST00000115103 ENTREZGENE
  ENSMUST00000115103.9 UniProtKB/TrEMBL
  ENSMUST00000124169.2 UniProtKB/TrEMBL
  ENSMUST00000139965 ENTREZGENE
  ENSMUST00000139965.8 UniProtKB/TrEMBL
  ENSMUST00000165288 ENTREZGENE
  ENSMUST00000165288.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Solute-binding_3/MltF_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53623 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95810 ENTREZGENE
NCBI Gene 53623 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SBP_bac_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB GRIA3 RGD
PhenoGen Gria3 PhenoGen
PRINTS NMDARECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PBPe UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2VDF4 ENTREZGENE
  A2VDF5_MOUSE UniProtKB/TrEMBL
  B0QZW1 ENTREZGENE, UniProtKB/TrEMBL
  B0QZW2_MOUSE UniProtKB/TrEMBL
  C9K0Y5 ENTREZGENE, UniProtKB/TrEMBL
  C9K0Y6_MOUSE UniProtKB/TrEMBL
  F2Z488_MOUSE UniProtKB/TrEMBL
  GRIA3_MOUSE UniProtKB/Swiss-Prot
  Q0VGS8 ENTREZGENE, UniProtKB/TrEMBL
  Q3TTV2 ENTREZGENE, UniProtKB/TrEMBL
  Q3TZK0_MOUSE UniProtKB/TrEMBL
  Q3UY17_MOUSE UniProtKB/TrEMBL
  Q5DTJ0 ENTREZGENE
  Q9Z2W9 ENTREZGENE
UniProt Secondary A2VDF4 UniProtKB/Swiss-Prot
  Q5DTJ0 UniProtKB/Swiss-Prot