Kdm3a (lysine (K)-specific demethylase 3A) - Rat Genome Database
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Gene: Kdm3a (lysine (K)-specific demethylase 3A) Mus musculus
Analyze
Symbol: Kdm3a
Name: lysine (K)-specific demethylase 3A
RGD ID: 737255
MGI Page MGI
Description: Is expressed in pituitary gland. Used to study obesity. Human ortholog(s) of this gene implicated in cervical cancer and colon cancer. Orthologous to human KDM3A (lysine demethylase 3A); PARTICIPATES IN histone modification pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1700105C21Rik; [histone H3]-dimethyl-L-lysine(9) demethylase 3A; C230043E16Rik; JHDM2a; jmjC domain-containing histone demethylation protein 2A; Jmjd1; Jmjd1a; jumonji domain containing 1A; jumonji domain-containing protein 1A; KDM2A; lysine-specific demethylase 3A; mKIAA0742; testis specific gene A; TGSA; Ts; Tsga
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,565,954 - 71,609,963 (-)NCBIGRCm39mm39
GRCm39 Ensembl671,565,956 - 71,609,974 (-)Ensembl
GRCm38671,588,970 - 71,632,990 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,588,972 - 71,632,990 (-)EnsemblGRCm38mm10GRCm38
MGSCv37671,538,966 - 71,582,899 (-)NCBIGRCm37mm9NCBIm37
MGSCv36671,518,550 - 71,562,078 (-)NCBImm8
Celera673,672,792 - 73,716,729 (-)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
6-propyl-2-thiouracil  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (EXP,ISO)
allethrin  (ISO)
ammonium chloride  (ISO)
apigenin  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carbonyl sulfide  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
desferrioxamine B  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP,ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
folpet  (EXP)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
L-ascorbic acid  (ISO)
leflunomide  (ISO)
menadione  (ISO)
motexafin gadolinium  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (EXP,ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
nitric oxide  (ISO)
paracetamol  (EXP)
phenobarbital  (EXP,ISO)
quercetin  (ISO)
quercitrin  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
sunitinib  (ISO)
tanespimycin  (ISO)
tert-butyl hydroperoxide  (ISO)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vandetanib  (ISO)
vinclozolin  (ISO)
zinc acetate  (ISO)
zinc dichloride  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal brown adipose tissue morphology  (IAGP)
abnormal brown adipose tissue physiology  (IAGP)
abnormal heart morphology  (IEA)
abnormal kidney morphology  (IEA)
abnormal male germ cell apoptosis  (IAGP)
abnormal muscle morphology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal spermatid morphology  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal spermiogenesis  (IAGP)
abnormal white adipose tissue morphology  (IAGP)
asthenozoospermia  (IAGP)
decreased bone mineral content  (IEA)
decreased oxygen consumption  (IAGP)
decreased prepulse inhibition  (IEA)
decreased testis weight  (IAGP)
enlarged heart  (IEA)
eye hemorrhage  (IEA)
hepatic steatosis  (IAGP)
hyperlipidemia  (IAGP)
impaired adaptive thermogenesis  (IAGP)
increased brown adipose tissue amount  (IAGP)
increased circulating cholesterol level  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating glucose level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating leptin level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased epididymal fat pad weight  (IAGP)
increased fat cell size  (IAGP)
increased percent body fat/body weight  (IAGP)
increased respiratory quotient  (IAGP)
increased retroperitoneal fat pad weight  (IAGP)
increased susceptibility to diet-induced obesity  (IAGP)
increased susceptibility to weight gain  (IAGP)
increased white adipose tissue amount  (IAGP)
increased white fat cell lipid droplet size  (IAGP)
insulin resistance  (IAGP)
male infertility  (IAGP)
obese  (IAGP)
oligozoospermia  (IAGP)
small kidney  (IEA)
small testis  (IAGP)
teratozoospermia  (IAGP)
References

References - curated
1. Bjorkman M, etal., Oncogene. 2012 Jul 19;31(29):3444-56. doi: 10.1038/onc.2011.512. Epub 2011 Nov 28.
2. Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
3. Du ZM, etal., PLoS One. 2011 Apr 26;6(4):e19137. doi: 10.1371/journal.pone.0019137.
4. Hoog C, etal., Mol Reprod Dev 1991 Nov;30(3):173-81.
5. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
6. Krieg AJ, etal., Mol Cell Biol. 2010 Jan;30(1):344-53. doi: 10.1128/MCB.00444-09. Epub .
7. MGD and Homologene mouse data transfer
8. MGD data from the GO Consortium
9. Okada Y, etal., J Androl. 2010 Jan-Feb;31(1):75-8. doi: 10.2164/jandrol.109.008052. Epub 2009 Oct 29.
10. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
11. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
12. Osawa T, etal., Cancer Res. 2013 May 15;73(10):3019-28. doi: 10.1158/0008-5472.CAN-12-3231. Epub 2013 Mar 14.
13. Parrish JK, etal., Oncogene. 2013 Dec 23. doi: 10.1038/onc.2013.541.
14. RGD automated import pipeline
15. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. RGD automated import pipeline for gene-chemical interactions
17. Suikki HE, etal., Prostate. 2010 Jun 1;70(8):889-98. doi: 10.1002/pros.21123.
18. Wellmann S, etal., Biochem Biophys Res Commun. 2008 Aug 8;372(4):892-7. doi: 10.1016/j.bbrc.2008.05.150. Epub 2008 Jun 4.
19. Yamada D, etal., Ann Surg Oncol. 2012 Jul;19 Suppl 3:S355-64. doi: 10.1245/s10434-011-1797-x. Epub 2011 May 24.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15618518   PMID:16141072  
PMID:16141073   PMID:16619273   PMID:16778019   PMID:16988490   PMID:17309103   PMID:17392792   PMID:17599069   PMID:17919994   PMID:17938240   PMID:17943087   PMID:17967808   PMID:17991879  
PMID:18022353   PMID:18535151   PMID:18799693   PMID:19194461   PMID:19624751   PMID:19910458   PMID:20439489   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22581778   PMID:23546878  
PMID:24009392   PMID:24183668   PMID:24312603   PMID:24554764   PMID:25071150   PMID:25336743   PMID:25948511   PMID:27472901   PMID:28162974   PMID:28246120   PMID:28692045   PMID:28949961  
PMID:28963472   PMID:29526734   PMID:29674659   PMID:29688375   PMID:29802196   PMID:30531796   PMID:30716474   PMID:31251083   PMID:31530896   PMID:32201075   PMID:32325033  


Genomics

Comparative Map Data
Kdm3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,565,954 - 71,609,963 (-)NCBIGRCm39mm39
GRCm39 Ensembl671,565,956 - 71,609,974 (-)Ensembl
GRCm38671,588,970 - 71,632,990 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,588,972 - 71,632,990 (-)EnsemblGRCm38mm10GRCm38
MGSCv37671,538,966 - 71,582,899 (-)NCBIGRCm37mm9NCBIm37
MGSCv36671,518,550 - 71,562,078 (-)NCBImm8
Celera673,672,792 - 73,716,729 (-)NCBICelera
Cytogenetic Map6C1NCBI
KDM3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl286,440,647 - 86,492,716 (+)EnsemblGRCh38hg38GRCh38
GRCh38286,440,647 - 86,492,716 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37286,668,494 - 86,719,839 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36286,521,865 - 86,573,350 (+)NCBINCBI36hg18NCBI36
Build 34286,580,100 - 86,631,497NCBI
Celera286,496,309 - 86,547,889 (+)NCBI
Cytogenetic Map2p11.2NCBI
HuRef286,565,835 - 86,617,601 (+)NCBIHuRef
CHM1_1286,598,317 - 86,649,908 (+)NCBICHM1_1
Kdm3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24103,630,907 - 103,675,073 (-)NCBI
Rnor_6.0 Ensembl499,503,176 - 99,546,905 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0499,503,160 - 99,547,315 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04164,282,422 - 164,326,579 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,866,501 - 104,911,355 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,110,981 - 105,155,233 (-)NCBI
Celera492,789,151 - 92,833,037 (-)NCBICelera
Cytogenetic Map4q31NCBI
Kdm3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,171,827 - 1,218,607 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,164,384 - 1,218,607 (-)NCBIChiLan1.0ChiLan1.0
KDM3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A88,043,712 - 88,094,244 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A86,497,531 - 86,548,772 (+)NCBIMhudiblu_PPA_v0panPan3
KDM3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1738,690,979 - 38,743,739 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11738,690,962 - 38,744,507 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Kdm3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367121,053,210 - 1,097,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDM3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,299,706 - 58,354,941 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,300,109 - 58,355,000 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,060,319 - 61,116,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KDM3A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11420,668,215 - 20,721,854 (-)NCBI
ChlSab1.1 Ensembl1420,668,821 - 20,720,759 (-)Ensembl
Kdm3a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474916,784,538 - 16,829,784 (-)NCBI

Position Markers
T25656  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,604,640 - 71,604,752UniSTSGRCm38
MGSCv37671,554,634 - 71,554,746UniSTSGRCm37
Celera673,688,456 - 73,688,568UniSTS
Cytogenetic Map6C1UniSTS
Whitehead_YAC4 UniSTS
RH125286  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,604,611 - 71,604,695UniSTSGRCm38
MGSCv37671,554,605 - 71,554,689UniSTSGRCm37
Celera673,688,427 - 73,688,511UniSTS
Cytogenetic Map6C1UniSTS
UniSTS:224291  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,588,774 - 71,588,940UniSTSGRCm38
MGSCv37671,538,768 - 71,538,934UniSTSGRCm37
Celera673,672,594 - 73,672,760UniSTS
Cytogenetic Map6C1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir155mmu-miR-155-5pOncomiRDBexternal_infoNANA21541331

Predicted Target Of
Summary Value
Count of predictions:448
Count of miRNA genes:195
Interacting mature miRNAs:210
Transcripts:ENSMUST00000065509, ENSMUST00000167220
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001038695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB519830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ323991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ708649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ461739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000065509   ⟹   ENSMUSP00000065716
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,588,972 - 71,632,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167220   ⟹   ENSMUSP00000128789
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,588,974 - 71,632,686 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205289   ⟹   ENSMUSP00000145719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,599,326 - 71,632,686 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205470
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,594,609 - 71,609,139 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205505
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,596,952 - 71,599,419 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206050
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,603,132 - 71,603,980 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206339
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,593,964 - 71,597,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206357
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,590,557 - 71,592,571 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206582
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,590,128 - 71,591,932 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206597
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,611,746 - 71,621,397 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206704
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,602,743 - 71,621,674 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206798
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,599,427 - 71,601,155 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206916   ⟹   ENSMUSP00000145992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,600,723 - 71,612,004 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207023   ⟹   ENSMUSP00000145959
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,589,037 - 71,632,990 (-)Ensembl
RefSeq Acc Id: NM_001038695   ⟹   NP_001033784
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,565,954 - 71,609,901 (-)NCBI
GRCm38671,588,970 - 71,632,917 (-)NCBI
MGSCv37671,538,966 - 71,582,899 (-)RGD
Celera673,672,790 - 73,716,741 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362200   ⟹   NP_001349129
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,565,954 - 71,609,901 (-)NCBI
GRCm38671,588,970 - 71,632,917 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362201   ⟹   NP_001349130
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,565,954 - 71,586,123 (-)NCBI
GRCm38671,588,970 - 71,609,139 (-)NCBI
Sequence:
RefSeq Acc Id: NM_173001   ⟹   NP_766589
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,565,954 - 71,609,670 (-)NCBI
GRCm38671,588,970 - 71,632,686 (-)NCBI
MGSCv37671,538,966 - 71,582,899 (-)RGD
Celera673,672,790 - 73,716,741 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030255049   ⟹   XP_030110909
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,566,022 - 71,609,963 (-)NCBI
GRCm38671,589,038 - 71,632,990 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255050   ⟹   XP_030110910
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,566,022 - 71,609,963 (-)NCBI
GRCm38671,589,038 - 71,632,990 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165720   ⟹   XP_036021613
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,566,022 - 71,591,519 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_766589   ⟸   NM_173001
- Peptide Label: isoform a
- UniProtKB: Q6PCM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001033784   ⟸   NM_001038695
- Peptide Label: isoform a
- UniProtKB: Q6PCM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001349129   ⟸   NM_001362200
- Peptide Label: isoform a
RefSeq Acc Id: NP_001349130   ⟸   NM_001362201
- Peptide Label: isoform b
RefSeq Acc Id: XP_030110910   ⟸   XM_030255050
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030110909   ⟸   XM_030255049
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000065716   ⟸   ENSMUST00000065509
RefSeq Acc Id: ENSMUSP00000145992   ⟸   ENSMUST00000206916
RefSeq Acc Id: ENSMUSP00000145719   ⟸   ENSMUST00000205289
RefSeq Acc Id: ENSMUSP00000145959   ⟸   ENSMUST00000207023
RefSeq Acc Id: ENSMUSP00000128789   ⟸   ENSMUST00000167220
RefSeq Acc Id: XP_036021613   ⟸   XM_036165720
- Peptide Label: isoform X1
Protein Domains
JmjC

Promoters
RGD ID:6839530
Promoter ID:MM_KWN:46429
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4
Transcripts:ENSMUST00000101304
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,559,156 - 71,559,656 (-)MPROMDB
RGD ID:6839537
Promoter ID:MM_KWN:46430
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4
Transcripts:UC009CHB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,571,901 - 71,572,401 (-)MPROMDB
RGD ID:6849213
Promoter ID:MM_XEF:5987
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   ES_Cell
Transcripts:NM_001012891,   NM_001146688,   NM_175764
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,581,881 - 71,582,381 (-)MPROMDB
RGD ID:6839549
Promoter ID:MM_KWN:46431
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001038695,   NM_173001,   UC009CHA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,582,516 - 71,583,607 (-)MPROMDB
RGD ID:6889978
Promoter ID:EPDNEW_M8440
Type:multiple initiation site
Name:Kdm3a_3
Description:Mus musculus lysine -specific demethylase 3A , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8441  EPDNEW_M8442  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,632,336 - 71,632,396EPDNEW
RGD ID:6889980
Promoter ID:EPDNEW_M8441
Type:single initiation site
Name:Kdm3a_2
Description:Mus musculus lysine -specific demethylase 3A , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8440  EPDNEW_M8442  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,632,682 - 71,632,742EPDNEW
RGD ID:6889982
Promoter ID:EPDNEW_M8442
Type:initiation region
Name:Kdm3a_1
Description:Mus musculus lysine -specific demethylase 3A , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8440  EPDNEW_M8441  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,632,909 - 71,632,969EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98847 AgrOrtholog
Ensembl Genes ENSMUSG00000053470 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000065716 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000128789 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145719 UniProtKB/TrEMBL
  ENSMUSP00000145959 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145992 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000065509 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000167220 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000205289 UniProtKB/TrEMBL
  ENSMUST00000206916 UniProtKB/TrEMBL
  ENSMUST00000207023 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro JmjC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:104263 UniProtKB/Swiss-Prot
MGD MGI:98847 ENTREZGENE
NCBI Gene 104263 ENTREZGENE
Pfam JmjC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kdm3a PhenoGen
PROSITE JMJC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART JmjC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A023ULC4_MOUSE UniProtKB/TrEMBL
  A0A0U1RNV6_MOUSE UniProtKB/TrEMBL
  A0A0U1RPI3_MOUSE UniProtKB/TrEMBL
  A0JLP7_MOUSE UniProtKB/TrEMBL
  KDM3A_MOUSE UniProtKB/Swiss-Prot
  Q05BY0_MOUSE UniProtKB/TrEMBL
  Q6PCM1 ENTREZGENE
  Q8BUV0_MOUSE UniProtKB/TrEMBL
  Q8BX11_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q2MJQ6 UniProtKB/Swiss-Prot
  Q3TKW8 UniProtKB/Swiss-Prot
  Q3UML3 UniProtKB/Swiss-Prot
  Q6ZQ57 UniProtKB/Swiss-Prot
  Q8K2J6 UniProtKB/Swiss-Prot
  Q8K2K4 UniProtKB/Swiss-Prot
  Q8R350 UniProtKB/Swiss-Prot