ELOCP29 (elongin C pseudogene 29) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ELOCP29 (elongin C pseudogene 29) Homo sapiens
Analyze
Symbol: ELOCP29
Name: elongin C pseudogene 29
RGD ID: 7371911
HGNC Page HGNC:49170
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: TCEB1P29; transcription elongation factor B subunit 1 pseudogene 29
Related Functional Gene: ELOC  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38199,182,128 - 9,183,226 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl199,182,369 - 9,183,048 (-)EnsemblGRCh38hg38GRCh38
GRCh37199,292,804 - 9,293,902 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36199,154,042 - 9,154,724 (-)NCBINCBI36Build 36hg18NCBI36
Celera199,188,290 - 9,189,251 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,874,499 - 8,875,460 (-)NCBIHuRef
CHM1_1199,292,534 - 9,293,495 (-)NCBICHM1_1
T2T-CHM13v2.0199,308,322 - 9,309,420 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:43
Interacting mature miRNAs:43
Transcripts:ENST00000588193
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 17 3 8 1 159 16 3 17 3 348 13 1 2 6
Below cutoff 235 221 175 43 151 32 497 188 428 29 134 137 11 151 312

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000588193
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl199,182,369 - 9,183,048 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ELOCP29 COSMIC
Ensembl Genes ENSG00000267418 Ensembl
GTEx ENSG00000267418 GTEx
HGNC ID HGNC:49170 ENTREZGENE
Human Proteome Map ELOCP29 Human Proteome Map
NCBI Gene TCEB1P29 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-08 ELOCP29  elongin C pseudogene 29  TCEB1P29  transcription elongation factor B subunit 1 pseudogene 29  Symbol and/or name change 5135510 APPROVED
2016-03-14 TCEB1P29  transcription elongation factor B subunit 1 pseudogene 29    transcription elongation factor B (SIII), polypeptide 1 pseudogene 29  Symbol and/or name change 5135510 APPROVED