Slc27a2 (solute carrier family 27 (fatty acid transporter), member 2) - Rat Genome Database

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Gene: Slc27a2 (solute carrier family 27 (fatty acid transporter), member 2) Mus musculus
Analyze
Symbol: Slc27a2
Name: solute carrier family 27 (fatty acid transporter), member 2
RGD ID: 737177
MGI Page MGI
Description: Enables long-chain fatty acid transmembrane transporter activity; long-chain fatty acid-CoA ligase activity; and very long-chain fatty acid-CoA ligase activity. Acts upstream of or within fatty acid transport; long-chain fatty acid metabolic process; and very long-chain fatty acid catabolic process. Located in endoplasmic reticulum; peroxisome; and plasma membrane. Is expressed in several structures, including brain; genitourinary system; liver; lung; and sensory organ. Orthologous to human SLC27A2 (solute carrier family 27 member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AC; ACSVL1; arachidonate--CoA ligase; FAT; FATP-2; FATP2; fatty acid transport protein 2; fatty-acid-coenzyme A ligase, very long-chain 1; long-chain fatty acid transport protein 2; long-chain-fatty-acid--CoA ligase; phytanate--CoA ligase; solute carrier family 27 member 2; THCA-CoA ligase; V; very long-chain acyl-CoA synthetase; very long-chain acyl-Coenzyme A dehydrogenase synthase; very long-chain-fatty-acid-CoA ligase; Vlac; Vlacs; VLCS
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392126,394,944 - 126,430,163 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2126,394,327 - 126,430,163 (+)EnsemblGRCm39 Ensembl
GRCm382126,553,024 - 126,588,243 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2126,552,407 - 126,588,243 (+)EnsemblGRCm38mm10GRCm38
MGSCv372126,378,760 - 126,413,979 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,244,596 - 126,279,377 (+)NCBIMGSCv36mm8
Celera2127,790,803 - 127,826,187 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
actinomycin D  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
benzylpenicillin  (EXP)
beta-naphthoflavone  (EXP)
bexarotene  (ISO)
bezafibrate  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
buta-1,3-diene  (EXP)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorothalonil  (EXP)
chlorpyrifos  (EXP)
chromium(6+)  (EXP,ISO)
cidofovir anhydrous  (ISO)
ciguatoxin CTX1B  (EXP)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
cylindrospermopsin  (EXP)
deoxycholic acid  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dipentyl phthalate  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
erythromycin A  (EXP)
ethanol  (ISO)
farnesol  (ISO)
fenofibrate  (EXP,ISO)
flutamide  (ISO)
folic acid  (ISO)
folpet  (EXP)
fructose  (EXP)
fumonisin B1  (EXP)
furan  (ISO)
gemfibrozil  (ISO)
genistein  (EXP)
GW 4064  (ISO)
GW 7647  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
L-ethionine  (ISO)
lead diacetate  (ISO)
lead(0)  (EXP)
menadione  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methotrexate  (EXP,ISO)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (EXP)
Muraglitazar  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (ISO)
nicotinic acid  (ISO)
nitrofen  (ISO)
Nutlin-3  (ISO)
olanzapine  (EXP,ISO)
oleic acid  (ISO)
omeprazole  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (EXP)
pravastatin  (EXP,ISO)
procymidone  (EXP)
progesterone  (EXP)
propamocarb  (EXP)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rifampicin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (EXP)
tauroursodeoxycholic acid  (ISO)
tert-butyl ethyl ether  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zidovudine  (ISO)
zoledronic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9271215   PMID:9559670   PMID:9642112   PMID:9671728   PMID:10198260   PMID:10349636   PMID:10471116   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11980911   PMID:12048192  
PMID:12477932   PMID:12719378   PMID:14610273   PMID:15464426   PMID:15699031   PMID:16141072   PMID:16141073   PMID:16354187   PMID:16602821   PMID:16916647   PMID:17082620   PMID:17463056  
PMID:17978498   PMID:18287559   PMID:19334288   PMID:19521566   PMID:20376577   PMID:20530735   PMID:21267068   PMID:21386911   PMID:21491542   PMID:21873635   PMID:22028793   PMID:23260145  
PMID:25662615   PMID:26284975   PMID:27033116   PMID:27760309   PMID:28993506   PMID:30334452   PMID:30996346   PMID:32179912   PMID:32188695   PMID:32325033   PMID:32614804   PMID:33219209  
PMID:33524739   PMID:35181339   PMID:35478964   PMID:36169895   PMID:38461272   PMID:38743615  


Genomics

Comparative Map Data
Slc27a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392126,394,944 - 126,430,163 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2126,394,327 - 126,430,163 (+)EnsemblGRCm39 Ensembl
GRCm382126,553,024 - 126,588,243 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2126,552,407 - 126,588,243 (+)EnsemblGRCm38mm10GRCm38
MGSCv372126,378,760 - 126,413,979 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,244,596 - 126,279,377 (+)NCBIMGSCv36mm8
Celera2127,790,803 - 127,826,187 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
SLC27A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381550,182,196 - 50,236,385 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1550,182,196 - 50,236,385 (+)EnsemblGRCh38hg38GRCh38
GRCh371550,474,393 - 50,528,582 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361548,261,714 - 48,315,862 (+)NCBINCBI36Build 36hg18NCBI36
Build 341548,261,713 - 48,315,862NCBI
Celera1527,367,005 - 27,421,191 (+)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1527,305,393 - 27,359,548 (+)NCBIHuRef
CHM1_11550,592,321 - 50,646,529 (+)NCBICHM1_1
T2T-CHM13v2.01547,990,417 - 48,044,633 (+)NCBIT2T-CHM13v2.0
Slc27a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,258,101 - 134,295,581 (+)NCBIGRCr8
mRatBN7.23113,804,728 - 113,842,208 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,804,728 - 113,842,208 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3117,687,726 - 117,725,657 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,283,254 - 126,321,189 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03123,943,634 - 123,981,567 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,014,620 - 119,052,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,014,620 - 119,052,531 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03125,542,772 - 125,580,197 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,072,570 - 114,114,269 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13113,978,142 - 114,019,842 (+)NCBI
Celera3112,647,886 - 112,684,776 (+)NCBICelera
Cytogenetic Map3q36NCBI
Slc27a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,077,149 - 4,112,828 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,077,685 - 4,112,828 (-)NCBIChiLan1.0ChiLan1.0
SLC27A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21639,422,327 - 39,474,538 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11543,606,084 - 43,658,662 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01529,130,262 - 29,182,752 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11547,452,227 - 47,505,066 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1547,452,227 - 47,505,066 (+)Ensemblpanpan1.1panPan2
SLC27A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13016,155,932 - 16,196,919 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3016,156,063 - 16,196,829 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3016,082,144 - 16,122,978 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03016,299,840 - 16,340,742 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3016,299,931 - 16,340,726 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13016,222,402 - 16,263,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03016,339,970 - 16,380,747 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03016,446,344 - 16,487,168 (+)NCBIUU_Cfam_GSD_1.0
Slc27a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864094,411,670 - 94,450,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647112,259,734 - 12,298,760 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647112,259,779 - 12,298,760 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC27A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,526,295 - 121,579,120 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,530,449 - 121,578,994 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21135,172,705 - 135,221,753 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC27A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12633,080,844 - 33,134,467 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2633,083,317 - 33,134,433 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048108,014,439 - 108,068,707 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc27a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247319,862,731 - 9,896,661 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247319,862,948 - 9,896,064 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc27a2
1105 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:407
Count of miRNA genes:279
Interacting mature miRNAs:309
Transcripts:ENSMUST00000061491, ENSMUST00000126249, ENSMUST00000141482, ENSMUST00000150947
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112024987128173821Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112024987128173821Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse

Markers in Region
AJ223958  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382126,588,106 - 126,588,207UniSTSGRCm38
MGSCv372126,413,842 - 126,413,943UniSTSGRCm37
Celera2127,826,050 - 127,826,151UniSTS
Cytogenetic Map2F1UniSTS
Whitehead/MRC_RH21574.39UniSTS
Slc27a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv372126,412,084 - 126,413,724UniSTSGRCm37
Celera2127,824,291 - 127,825,931UniSTS
Cytogenetic Map2F1UniSTS
cM Map2 UniSTS
Slc27a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382126,586,348 - 126,587,988UniSTSGRCm38
MGSCv372126,412,084 - 126,413,724UniSTSGRCm37
Celera2127,824,291 - 127,825,931UniSTS
Cytogenetic Map2F1UniSTS
cM Map2 UniSTS
Slc27a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2F1UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000061491   ⟹   ENSMUSP00000057595
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2126,394,327 - 126,430,163 (+)Ensembl
GRCm38.p6 Ensembl2126,552,407 - 126,588,243 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2126,395,510 - 126,406,605 (+)Ensembl
GRCm38.p6 Ensembl2126,553,590 - 126,564,685 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141482   ⟹   ENSMUSP00000117145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2126,398,048 - 126,429,858 (+)Ensembl
GRCm38.p6 Ensembl2126,556,128 - 126,587,938 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2126,406,680 - 126,417,411 (+)Ensembl
GRCm38.p6 Ensembl2126,564,760 - 126,575,491 (+)Ensembl
RefSeq Acc Id: NM_011978   ⟹   NP_036108
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392126,394,944 - 126,430,163 (+)NCBI
GRCm382126,553,024 - 126,588,243 (+)ENTREZGENE
MGSCv372126,378,760 - 126,413,979 (+)RGD
Celera2127,790,803 - 127,826,187 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_036108   ⟸   NM_011978
- UniProtKB: O88560 (UniProtKB/Swiss-Prot),   O70550 (UniProtKB/Swiss-Prot),   Q91WV6 (UniProtKB/Swiss-Prot),   O35488 (UniProtKB/Swiss-Prot),   Q3UNR3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000057595   ⟸   ENSMUST00000061491
Ensembl Acc Id: ENSMUSP00000117145   ⟸   ENSMUST00000141482
Protein Domains
AMP-binding enzyme C-terminal   AMP-dependent synthetase/ligase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35488-F1-model_v2 AlphaFold O35488 1-620 view protein structure

Promoters
RGD ID:6832747
Promoter ID:MM_KWN:31543
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000037419,   OTTMUST00000037420
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362126,378,609 - 126,379,109 (+)MPROMDB
RGD ID:6832745
Promoter ID:MM_KWN:31544
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:ENSMUST00000099438,   OTTMUST00000037421
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362126,381,001 - 126,381,532 (+)MPROMDB
RGD ID:6832744
Promoter ID:MM_KWN:31545
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:OTTMUST00000037422
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362126,389,501 - 126,390,652 (+)MPROMDB
RGD ID:6878598
Promoter ID:EPDNEW_M2750
Type:initiation region
Name:Slc27a2_1
Description:Mus musculus solute carrier family 27 , member 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382126,553,024 - 126,553,084EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347099 AgrOrtholog
Ensembl Genes ENSMUSG00000027359 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061491 ENTREZGENE
  ENSMUST00000061491.14 UniProtKB/Swiss-Prot
  ENSMUST00000141482.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.300.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-dep_Synthh-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26458 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1347099 ENTREZGENE
NCBI Gene 26458 ENTREZGENE
PANTHER LONG-CHAIN FATTY ACID TRANSPORT PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR43107:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc27a2 PhenoGen
PROSITE AMP_BINDING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ANX6_MOUSE UniProtKB/TrEMBL
  O35488 ENTREZGENE
  O70550 ENTREZGENE
  O88560 ENTREZGENE
  Q3TN99_MOUSE UniProtKB/TrEMBL
  Q3UNR3 ENTREZGENE, UniProtKB/TrEMBL
  Q91WV6 ENTREZGENE
  S27A2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O70550 UniProtKB/Swiss-Prot
  O88560 UniProtKB/Swiss-Prot
  Q91WV6 UniProtKB/Swiss-Prot