HSPE1P7 (heat shock protein family E (Hsp10) member 1 pseudogene 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: HSPE1P7 (heat shock protein family E (Hsp10) member 1 pseudogene 7) Homo sapiens
Analyze
Symbol: HSPE1P7
Name: heat shock protein family E (Hsp10) member 1 pseudogene 7
RGD ID: 7371353
HGNC Page HGNC:49327
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HSPE1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381674,612,091 - 74,613,249 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1674,612,596 - 74,613,221 (-)EnsemblGRCh38hg38GRCh38
GRCh371674,645,989 - 74,647,147 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,203,922 - 73,204,620 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map16q23.1NCBI
HuRef1660,395,911 - 60,397,013 (-)NCBIHuRef
CHM1_11676,057,939 - 76,059,097 (-)NCBICHM1_1
T2T-CHM13v2.01680,658,821 - 80,659,979 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:136
Interacting mature miRNAs:138
Transcripts:ENST00000604681
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 10 14 36 16 59 16 15 6 28 7 29 11 8 13
Below cutoff 402 406 384 119 223 89 586 348 668 59 202 277 31 170 379 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000604681
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1674,612,596 - 74,613,221 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HSPE1P7 COSMIC
Ensembl Genes ENSG00000270945 Ensembl
GTEx ENSG00000270945 GTEx
HGNC ID HGNC:49327 ENTREZGENE
Human Proteome Map HSPE1P7 Human Proteome Map
NCBI Gene HSPE1P7 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 HSPE1P7  heat shock protein family E (Hsp10) member 1 pseudogene 7    heat shock 10kDa protein 1 pseudogene 7  Symbol and/or name change 5135510 APPROVED