Clcn1 (chloride channel, voltage-sensitive 1) - Rat Genome Database
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Gene: Clcn1 (chloride channel, voltage-sensitive 1) Mus musculus
Analyze
Symbol: Clcn1
Name: chloride channel, voltage-sensitive 1
RGD ID: 737113
Description: Predicted to have protein homodimerization activity and voltage-gated chloride channel activity. Involved in chloride transport and neuronal action potential propagation. Localizes to sarcolemma. Is expressed in central nervous system; early conceptus; heart; oocyte; and retina. Used to study myotonia congenita. Human ortholog(s) of this gene implicated in myotonia congenita. Orthologous to human CLCN1 (chloride voltage-gated channel 1); INTERACTS WITH bisphenol A; clofibrate; genistein.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: adr; arrested development of righting response; chloride channel 1; chloride channel protein 1; chloride channel protein, skeletal muscle; Clc; Clc-; Clc-1; Clc1; MGC124486; mto; myotonia; NMF35; nmf355; SMCC; SMCC1
Orthologs:
Homo sapiens (human) : CLCN1 (chloride voltage-gated channel 1)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Clcn1 (chloride voltage-gated channel 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clcn1 (chloride voltage-gated channel 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLCN1 (chloride voltage-gated channel 1)
Canis lupus familiaris (dog) : CLCN1 (chloride voltage-gated channel 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clcn1 (chloride voltage-gated channel 1)
Sus scrofa (pig) : CLCN1 (chloride voltage-gated channel 1)
Chlorocebus sabaeus (African green monkey) : CLCN1 (chloride voltage-gated channel 1)
Heterocephalus glaber (naked mole-rat) : Clcn1 (chloride voltage-gated channel 1)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,263,552 - 42,292,698 (+)NCBI
GRCm38642,284,851 - 42,315,764 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,286,685 - 42,315,756 (+)EnsemblGRCm38mm10GRCm38
MGSCv37642,236,684 - 42,264,655 (+)NCBIGRCm37mm9NCBIm37
MGSCv36642,216,292 - 42,244,263 (+)NCBImm8
Celera642,231,004 - 42,259,063 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:510737   PMID:1653899   PMID:1659665   PMID:2453798   PMID:2967431   PMID:3123225   PMID:3138114   PMID:3166105   PMID:3243424   PMID:3375245   PMID:3402356   PMID:3621304  
PMID:5316641   PMID:6589628   PMID:7097320   PMID:7264673   PMID:7522680   PMID:7649361   PMID:7721815   PMID:7905852   PMID:7961681   PMID:8008830   PMID:8088838   PMID:8119941  
PMID:8268723   PMID:8595265   PMID:8889551   PMID:9090377   PMID:9172305   PMID:9321463   PMID:9350619   PMID:10093060   PMID:10093061   PMID:10349636   PMID:10628777   PMID:11042159  
PMID:11076861   PMID:11208521   PMID:11217851   PMID:12150905   PMID:12196568   PMID:12370472   PMID:12466851   PMID:12477932   PMID:12875918   PMID:15589523   PMID:15647477   PMID:15687484  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:16717059   PMID:16943554   PMID:16959550   PMID:16985003   PMID:17135300   PMID:17158949   PMID:17335846   PMID:17483199   PMID:18008009  
PMID:19223393   PMID:21078869   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21886624   PMID:22846424   PMID:23115349   PMID:23247112   PMID:23625574   PMID:23671115   PMID:23828222  
PMID:24039817   PMID:25168381   PMID:26304544   PMID:26501102   PMID:26552429   PMID:27522499  


Genomics

Comparative Map Data
Clcn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,263,552 - 42,292,698 (+)NCBI
GRCm38642,284,851 - 42,315,764 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,286,685 - 42,315,756 (+)EnsemblGRCm38mm10GRCm38
MGSCv37642,236,684 - 42,264,655 (+)NCBIGRCm37mm9NCBIm37
MGSCv36642,216,292 - 42,244,263 (+)NCBImm8
Celera642,231,004 - 42,259,063 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.57NCBI
CLCN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7143,316,111 - 143,352,083 (+)EnsemblGRCh38hg38GRCh38
GRCh387143,316,111 - 143,352,083 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377143,013,219 - 143,049,097 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,723,341 - 142,759,219 (+)NCBINCBI36hg18NCBI36
Build 347142,530,055 - 142,565,934NCBI
Celera7137,850,084 - 137,885,958 (+)NCBI
Cytogenetic Map7q34NCBI
HuRef7137,350,584 - 137,386,478 (+)NCBIHuRef
CHM1_17142,950,106 - 142,986,018 (+)NCBICHM1_1
CRA_TCAGchr7v27142,415,337 - 142,451,223 (+)NCBI
Clcn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0471,674,218 - 71,704,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl471,675,383 - 71,702,819 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04136,479,719 - 136,509,472 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4470,052,319 - 70,081,449 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1470,328,448 - 70,357,579 (+)NCBI
Celera466,103,038 - 66,130,477 (+)NCBICelera
Cytogenetic Map4q24NCBI
RH 3.4 Map4433.61RGD
Clcn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494319,738 - 348,511 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955494318,137 - 349,568 (-)NCBIChiLan1.0ChiLan1.0
CLCN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17147,801,440 - 147,837,654 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,801,440 - 147,836,701 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07135,308,966 - 135,346,734 (+)NCBIMhudiblu_PPA_v0panPan3
CLCN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl166,342,772 - 6,373,580 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1166,342,772 - 6,373,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Clcn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936527759,012 - 791,302 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,902,542 - 6,966,092 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,902,540 - 6,941,530 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,143,450 - 7,181,431 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLCN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl21112,197,518 - 112,236,115 (+)Ensembl
ChlSab1.121112,196,136 - 112,237,836 (+)NCBI
Clcn1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480011,417,040 - 11,446,732 (-)NCBI

Position Markers
AV277466  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38642,315,592 - 42,315,727UniSTSGRCm38
MGSCv37642,265,591 - 42,265,726UniSTSGRCm37
Celera642,259,999 - 42,260,134UniSTS
Cytogenetic Map6B2UniSTS
Cytogenetic Map6B2.1UniSTS
Whitehead/MRC_RH6330.66UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345314181Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348726677Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348726677Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348726677Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707543297169Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797246118070Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122246751334Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122246751334Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61770000053500000Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61773466351734784Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1773466351734784Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61773466351734784Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61963941153639411Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61963941153639411Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61963941153639411Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62007289554072895Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62380000057800000Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2831405962314181Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3172656565726677Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63270000066700000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63389528167895420Mouse
11252142Mom12_mModifier of Min 12 (mouse)63389528167895420Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63629634770296450Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63647147170471591Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3676447870764478Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5878
Count of miRNA genes:799
Interacting mature miRNAs:1079
Transcripts:ENSMUST00000031894, ENSMUST00000114684, ENSMUST00000163235, ENSMUST00000163936, ENSMUST00000164091, ENSMUST00000165780, ENSMUST00000168660, ENSMUST00000169024, ENSMUST00000169902, ENSMUST00000170028
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001363712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ011105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ011106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ011107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ539382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY046403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY046404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC114336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z31375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z95149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031894   ⟹   ENSMUSP00000031894
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,286,685 - 42,314,656 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114684
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,298,900 - 42,315,756 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163235   ⟹   ENSMUSP00000132387
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,310,145 - 42,313,064 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163936   ⟹   ENSMUSP00000130148
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,286,856 - 42,314,178 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164091   ⟹   ENSMUSP00000131354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,286,767 - 42,314,178 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165780   ⟹   ENSMUSP00000130550
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,286,856 - 42,314,178 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168660   ⟹   ENSMUSP00000126045
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,286,866 - 42,313,957 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169024   ⟹   ENSMUSP00000130968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,286,856 - 42,314,229 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169902
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,312,492 - 42,313,344 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170028   ⟹   ENSMUSP00000132154
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,286,856 - 42,314,178 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238845   ⟹   ENSMUSP00000158998
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl642,286,685 - 42,298,924 (+)Ensembl
RefSeq Acc Id: NM_001363712   ⟹   NP_001350641
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,263,619 - 42,292,698 (+)NCBI
GRCm38642,286,685 - 42,315,764 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013491   ⟹   NP_038519
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,263,619 - 42,292,698 (+)NCBI
GRCm38642,286,685 - 42,315,764 (+)NCBI
MGSCv37642,236,684 - 42,264,655 (+)RGD
Celera642,231,004 - 42,259,063 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505476   ⟹   XP_006505539
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,263,555 - 42,292,688 (+)NCBI
GRCm38642,297,059 - 42,315,759 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165796   ⟹   XP_036021689
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,263,554 - 42,292,688 (+)NCBI
RefSeq Acc Id: XM_036165797   ⟹   XP_036021690
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,263,600 - 42,292,688 (+)NCBI
RefSeq Acc Id: XM_036165798   ⟹   XP_036021691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,263,555 - 42,292,688 (+)NCBI
RefSeq Acc Id: XR_003956160
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,263,553 - 42,292,693 (+)NCBI
GRCm38642,284,851 - 42,315,759 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942914
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39642,263,552 - 42,286,962 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_038519   ⟸   NM_013491
- Peptide Label: isoform 1
- UniProtKB: Q64347 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505539   ⟸   XM_006505476
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001350641   ⟸   NM_001363712
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000132154   ⟸   ENSMUST00000170028
RefSeq Acc Id: ENSMUSP00000131354   ⟸   ENSMUST00000164091
RefSeq Acc Id: ENSMUSP00000130148   ⟸   ENSMUST00000163936
RefSeq Acc Id: ENSMUSP00000031894   ⟸   ENSMUST00000031894
RefSeq Acc Id: ENSMUSP00000132387   ⟸   ENSMUST00000163235
RefSeq Acc Id: ENSMUSP00000130550   ⟸   ENSMUST00000165780
RefSeq Acc Id: ENSMUSP00000158998   ⟸   ENSMUST00000238845
RefSeq Acc Id: ENSMUSP00000130968   ⟸   ENSMUST00000169024
RefSeq Acc Id: ENSMUSP00000126045   ⟸   ENSMUST00000168660
RefSeq Acc Id: XP_036021689   ⟸   XM_036165796
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036021691   ⟸   XM_036165798
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036021690   ⟸   XM_036165797
- Peptide Label: isoform X2
Protein Domains
CBS

Promoters
RGD ID:6889534
Promoter ID:EPDNEW_M8218
Type:initiation region
Name:Clcn1_1
Description:Mus musculus chloride channel, voltage-sensitive 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38642,286,666 - 42,286,726EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88417 AgrOrtholog
Ensembl Genes ENSMUSG00000029862 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031894 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000126045 UniProtKB/TrEMBL
  ENSMUSP00000130148 UniProtKB/TrEMBL
  ENSMUSP00000130550 UniProtKB/TrEMBL
  ENSMUSP00000130968 UniProtKB/TrEMBL
  ENSMUSP00000131354 UniProtKB/TrEMBL
  ENSMUSP00000132154 UniProtKB/TrEMBL
  ENSMUSP00000132387 UniProtKB/TrEMBL
  ENSMUSP00000158998 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031894 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000163235 UniProtKB/TrEMBL
  ENSMUST00000163936 UniProtKB/TrEMBL
  ENSMUST00000164091 UniProtKB/TrEMBL
  ENSMUST00000165780 UniProtKB/TrEMBL
  ENSMUST00000168660 UniProtKB/TrEMBL
  ENSMUST00000169024 UniProtKB/TrEMBL
  ENSMUST00000170028 UniProtKB/TrEMBL
  ENSMUST00000238845 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3080.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CBS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cl-channel_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cl-channel_volt-gated UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cl_channel-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12723 UniProtKB/Swiss-Prot
MGD MGI:88417 ENTREZGENE
NCBI Gene 12723 ENTREZGENE
Pfam Voltage_CLC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clcn1 PhenoGen
PRINTS CLCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLCHANNEL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CBS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.386757 ENTREZGENE
UniProt A0A5F8MPY7_MOUSE UniProtKB/TrEMBL
  CLCN1_MOUSE UniProtKB/Swiss-Prot
  E9Q2N3_MOUSE UniProtKB/TrEMBL
  F6QI82_MOUSE UniProtKB/TrEMBL
  F6QL23_MOUSE UniProtKB/TrEMBL
  F6VSA8_MOUSE UniProtKB/TrEMBL
  F6X177_MOUSE UniProtKB/TrEMBL
  F7A9J6_MOUSE UniProtKB/TrEMBL
  F7C9S1_MOUSE UniProtKB/TrEMBL
  Q3TTA5_MOUSE UniProtKB/TrEMBL
  Q64347 ENTREZGENE
  Q8K3N0_MOUSE UniProtKB/TrEMBL
  Q8K3N1_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8BZ41 UniProtKB/Swiss-Prot
  Q9QVY5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-20 Clcn1  chloride channel, voltage-sensitive 1    chloride channel 1  Symbol and/or name change 5135510 APPROVED