Chrne (cholinergic receptor, nicotinic, epsilon polypeptide) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Chrne (cholinergic receptor, nicotinic, epsilon polypeptide) Mus musculus
Analyze
Symbol: Chrne
Name: cholinergic receptor, nicotinic, epsilon polypeptide
RGD ID: 737109
MGI Page MGI
Description: Contributes to acetylcholine-gated monoatomic cation-selective channel activity. Acts upstream of or within regulation of membrane potential. Located in postsynaptic membrane. Is active in neuromuscular junction and postsynaptic specialization membrane. Is expressed in diaphragm; skeletal musculature; and tongue. Used to study congenital myasthenic syndrome 4A and congenital myasthenic syndrome 4C. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome; congenital myasthenic syndrome 4A; congenital myasthenic syndrome 4B; and congenital myasthenic syndrome 4C. Orthologous to human CHRNE (cholinergic receptor nicotinic epsilon subunit).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Ac; acetylcholine receptor epsilon subunit; acetylcholine receptor subunit epsilon; ACh; AchR epsilon subunit; AChrepsilon; Acre; nAChRE; nicotinic acetylcholine receptor epsilon subunit
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,505,709 - 70,510,074 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,505,709 - 70,510,042 (-)EnsemblGRCm39 Ensembl
GRCm381170,614,883 - 70,619,213 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,614,883 - 70,619,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,428,385 - 70,432,696 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,431,078 - 70,435,389 (-)NCBIMGSCv36mm8
Celera1178,163,204 - 78,167,515 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mammalian nicotinic acetylcholine receptors: from structure to function. Albuquerque EX, etal., Physiol Rev. 2009 Jan;89(1):73-120. doi: 10.1152/physrev.00015.2008.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. The neuromuscular junction: selective remodeling of synaptic regulators at the nerve/muscle interface. Witzemann V, etal., Mech Dev. 2013 Jun-Aug;130(6-8):402-11. doi: 10.1016/j.mod.2012.09.004. Epub 2012 Sep 29.
Additional References at PubMed
PMID:1811935   PMID:2054186   PMID:2251144   PMID:2383398   PMID:2708381   PMID:3782129   PMID:4781450   PMID:8263973   PMID:8334706   PMID:8464921   PMID:8663316   PMID:8707830  
PMID:8755487   PMID:8838678   PMID:8917583   PMID:9362465   PMID:9540821   PMID:9580980   PMID:10087048   PMID:10211467   PMID:10349636   PMID:10521398   PMID:10998094   PMID:11042159  
PMID:11076861   PMID:11926244   PMID:12012784   PMID:12087176   PMID:12183685   PMID:12477932   PMID:12832540   PMID:15471888   PMID:15824106   PMID:15864502   PMID:15883046   PMID:16141072  
PMID:16141073   PMID:16203963   PMID:16407563   PMID:16826520   PMID:16973214   PMID:18023270   PMID:18036335   PMID:18434415   PMID:18436384   PMID:18676817   PMID:19171769   PMID:19171937  
PMID:19422391   PMID:20026389   PMID:20574709   PMID:20864527   PMID:21368211   PMID:21873635   PMID:21985497   PMID:22178625   PMID:22474383   PMID:22496563   PMID:23519471   PMID:23898191  
PMID:26115514   PMID:26993635   PMID:29323161   PMID:34091985  


Genomics

Comparative Map Data
Chrne
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,505,709 - 70,510,074 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,505,709 - 70,510,042 (-)EnsemblGRCm39 Ensembl
GRCm381170,614,883 - 70,619,213 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,614,883 - 70,619,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,428,385 - 70,432,696 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,431,078 - 70,435,389 (-)NCBIMGSCv36mm8
Celera1178,163,204 - 78,167,515 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.14NCBI
CHRNE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,897,771 - 4,908,677 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,897,771 - 4,934,438 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,801,066 - 4,806,393 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,741,840 - 4,747,148 (-)NCBINCBI36Build 36hg18NCBI36
Build 34174,741,839 - 4,747,148NCBI
Celera174,815,945 - 4,821,250 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,689,154 - 4,694,504 (-)NCBIHuRef
CHM1_1174,810,338 - 4,815,646 (-)NCBICHM1_1
T2T-CHM13v2.0174,788,020 - 4,798,918 (-)NCBIT2T-CHM13v2.0
Chrne
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,829,835 - 55,838,853 (-)NCBIGRCr8
mRatBN7.21055,331,211 - 55,339,923 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,331,212 - 55,335,530 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,011,969 - 60,016,288 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,500,475 - 59,504,794 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,999,578 - 55,003,897 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,238,960 - 57,246,750 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,238,946 - 57,243,435 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,984,503 - 56,992,199 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,497,192 - 57,501,511 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,510,815 - 57,515,134 (-)NCBI
Celera1054,476,876 - 54,481,195 (-)NCBICelera
Cytogenetic Map10q24NCBI
Chrne
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,312,620 - 10,318,638 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,312,620 - 10,318,700 (-)NCBIChiLan1.0ChiLan1.0
CHRNE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,506,354 - 12,511,423 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,474,709 - 14,477,637 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,944,046 - 4,950,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,933,357 - 4,946,284 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,932,862 - 4,937,963 (-)Ensemblpanpan1.1panPan2
CHRNE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,696,710 - 31,707,639 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,696,993 - 31,708,671 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,836,334 - 31,850,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,801,741 - 31,815,685 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,802,046 - 31,812,718 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,768,261 - 31,782,214 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,727,997 - 31,741,918 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,904,356 - 31,918,294 (+)NCBIUU_Cfam_GSD_1.0
Chrne
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,087,640 - 53,091,934 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,808,799 - 2,813,290 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,809,057 - 2,813,838 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRNE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,011,250 - 52,016,299 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,999,504 - 52,016,592 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,055,506 - 54,084,872 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHRNE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,370,550 - 4,385,330 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,371,236 - 4,375,567 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,259,066 - 17,265,230 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chrne
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,764,966 - 8,769,700 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,767,001 - 8,769,912 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chrne
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:607
Count of miRNA genes:264
Interacting mature miRNAs:290
Transcripts:ENSMUST00000014753, ENSMUST00000102556, ENSMUST00000134836, ENSMUST00000135920
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse

Markers in Region
J04698  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,614,632 - 70,614,793UniSTSGRCm38
MGSCv371170,428,134 - 70,428,295UniSTSGRCm37
Celera1178,162,953 - 78,163,114UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map11B3UniSTS
cM Map1142.0UniSTS
Whitehead_YAC11 UniSTS
D11Mit210  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,619,874 - 70,620,003UniSTSGRCm38
MGSCv371170,433,376 - 70,433,505UniSTSGRCm37
Celera1178,170,848 - 78,170,977UniSTS
Celera1178,168,197 - 78,168,336UniSTS
Cytogenetic Map11B3UniSTS
cM Map1142.0UniSTS
Whitehead Genetic1138.3UniSTS
Whitehead_YAC11 UniSTS
Chrne  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,618,469 - 70,618,878UniSTSGRCm38
Celera1178,166,790 - 78,167,199UniSTS
Cytogenetic Map11B3UniSTS
cM Map1143.14UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000014753   ⟹   ENSMUSP00000014753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,505,709 - 70,510,042 (-)Ensembl
GRCm38.p6 Ensembl1170,614,883 - 70,619,216 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102556   ⟹   ENSMUSP00000099616
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,505,709 - 70,510,020 (-)Ensembl
GRCm38.p6 Ensembl1170,614,883 - 70,619,194 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,505,719 - 70,506,523 (-)Ensembl
GRCm38.p6 Ensembl1170,614,893 - 70,615,697 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,505,711 - 70,506,499 (-)Ensembl
GRCm38.p6 Ensembl1170,614,885 - 70,615,673 (-)Ensembl
RefSeq Acc Id: NM_009603   ⟹   NP_033733
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,505,709 - 70,510,020 (-)NCBI
GRCm381170,614,883 - 70,619,194 (-)NCBI
MGSCv371170,428,385 - 70,432,696 (-)RGD
Celera1178,163,204 - 78,167,515 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532006   ⟹   XP_006532069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,505,709 - 70,510,044 (-)NCBI
GRCm381170,614,883 - 70,619,211 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532007   ⟹   XP_006532070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,505,709 - 70,510,044 (-)NCBI
GRCm381170,614,883 - 70,619,213 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156232   ⟹   XP_036012125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,505,709 - 70,510,044 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156233   ⟹   XP_036012126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,506,473 - 70,510,074 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936687
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,505,709 - 70,510,073 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033733   ⟸   NM_009603
- Peptide Label: precursor
- UniProtKB: P20782 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532070   ⟸   XM_006532007
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006532069   ⟸   XM_006532006
- Peptide Label: isoform X1
- UniProtKB: Q5SXG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000014753   ⟸   ENSMUST00000014753
RefSeq Acc Id: ENSMUSP00000099616   ⟸   ENSMUST00000102556
RefSeq Acc Id: XP_036012125   ⟸   XM_036156232
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036012126   ⟸   XM_036156233
- Peptide Label: isoform X4
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P20782-F1-model_v2 AlphaFold P20782 1-493 view protein structure

Promoters
RGD ID:6821768
Promoter ID:MM_KWN:8235
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001145537,   OTTMUST00000013643,   OTTMUST00000013644,   OTTMUST00000013661,   OTTMUST00000013662,   OTTMUST00000013663
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,428,706 - 70,429,992 (+)MPROMDB
RGD ID:8675342
Promoter ID:EPDNEW_M15702
Type:multiple initiation site
Name:Chrne_1
Description:Mus musculus cholinergic receptor, nicotinic, epsilon polypeptide, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,619,202 - 70,619,262EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:87894 AgrOrtholog
Ensembl Genes ENSMUSG00000014609 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000014753 ENTREZGENE
  ENSMUST00000014753.9 UniProtKB/TrEMBL
  ENSMUST00000102556 ENTREZGENE
  ENSMUST00000102556.10 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.58.390 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Neur_chan_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nicotinic_acetylcholine_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11448 UniProtKB/Swiss-Prot
MGD MGI:87894 ENTREZGENE
NCBI Gene 11448 ENTREZGENE
PANTHER ACETYLCHOLINE RECEPTOR SUBUNIT EPSILON UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18945 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chrne PhenoGen
PRINTS NICOTINICR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ACHE_MOUSE UniProtKB/Swiss-Prot
  O54712_MOUSE UniProtKB/TrEMBL
  P20782 ENTREZGENE
  Q5SXG9 ENTREZGENE, UniProtKB/TrEMBL
  Q8K1N0_MOUSE UniProtKB/TrEMBL
  Q9CVV1_MOUSE UniProtKB/TrEMBL