UBXN11 (UBX domain protein 11) - Rat Genome Database

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Gene: UBXN11 (UBX domain protein 11) Homo sapiens
Analyze
Symbol: UBXN11
Name: UBX domain protein 11
RGD ID: 737092
HGNC Page HGNC:30600
Description: Predicted to enable ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: COA-1; colorectal tumor-associated antigen COA-1; colorectal tumor-associated antigen-1; DKFZp686F04228; PP2243; SOC; SOCI; socius; UBX domain containing 5; UBX domain-containing protein 11; UBX domain-containing protein 5; UBXD5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,282,282 - 26,318,355 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,281,328 - 26,318,363 (-)EnsemblGRCh38hg38GRCh38
GRCh37126,608,773 - 26,644,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,481,360 - 26,517,343 (-)NCBINCBI36Build 36hg18NCBI36
Build 34126,292,916 - 26,317,278NCBI
Celera125,005,107 - 25,041,075 (-)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef124,863,104 - 24,898,855 (-)NCBIHuRef
CHM1_1126,722,043 - 26,757,960 (-)NCBICHM1_1
T2T-CHM13v2.0126,119,766 - 26,155,807 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytoskeleton  (IEA)
cytosol  (TAS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8619474   PMID:9110174   PMID:11940653   PMID:12477932   PMID:14583468   PMID:14702039   PMID:15231748   PMID:16189514   PMID:16202387   PMID:16344560   PMID:18775313   PMID:18974390  
PMID:21516116   PMID:21873635   PMID:23251661   PMID:24722188   PMID:25416956   PMID:26186194   PMID:27107014   PMID:28152074   PMID:28514442   PMID:29997244   PMID:31515488   PMID:32296183  
PMID:33058883   PMID:33961781  


Genomics

Comparative Map Data
UBXN11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,282,282 - 26,318,355 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,281,328 - 26,318,363 (-)EnsemblGRCh38hg38GRCh38
GRCh37126,608,773 - 26,644,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,481,360 - 26,517,343 (-)NCBINCBI36Build 36hg18NCBI36
Build 34126,292,916 - 26,317,278NCBI
Celera125,005,107 - 25,041,075 (-)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef124,863,104 - 24,898,855 (-)NCBIHuRef
CHM1_1126,722,043 - 26,757,960 (-)NCBICHM1_1
T2T-CHM13v2.0126,119,766 - 26,155,807 (-)NCBIT2T-CHM13v2.0
Ubxn11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394133,829,811 - 133,854,095 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4133,829,881 - 133,854,904 (+)EnsemblGRCm39 Ensembl
GRCm384134,102,500 - 134,126,784 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,102,570 - 134,127,593 (+)EnsemblGRCm38mm10GRCm38
MGSCv374133,658,514 - 133,682,693 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364133,374,675 - 133,398,854 (+)NCBIMGSCv36mm8
Celera4132,283,593 - 132,308,305 (+)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.5NCBI
Ubxn11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,613,411 - 151,637,274 (+)NCBIGRCr8
mRatBN7.25146,329,666 - 146,353,529 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5146,329,842 - 146,353,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5149,032,588 - 149,056,308 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05150,802,155 - 150,825,876 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05150,788,803 - 150,812,523 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05152,332,993 - 152,356,647 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5152,333,043 - 152,356,890 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05156,018,753 - 156,042,876 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,853,129 - 152,876,718 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,863,167 - 152,886,756 (+)NCBI
Celera5144,748,852 - 144,772,442 (+)NCBICelera
Cytogenetic Map5q36NCBI
Ubxn11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554525,682,794 - 5,705,701 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554525,685,416 - 5,708,993 (-)NCBIChiLan1.0ChiLan1.0
UBXN11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21200,565,058 - 200,589,395 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11199,663,223 - 199,687,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0125,543,314 - 25,567,655 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,611,308 - 26,636,049 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,608,439 - 26,636,016 (-)Ensemblpanpan1.1panPan2
UBXN11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,714,722 - 73,736,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,714,808 - 73,736,697 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha270,291,389 - 70,313,388 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,277,711 - 74,300,222 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,277,797 - 74,304,593 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,102,663 - 71,124,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,108,317 - 72,130,495 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,112,152 - 73,134,399 (+)NCBIUU_Cfam_GSD_1.0
Ubxn11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505844,953,586 - 44,976,063 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647410,778,990 - 10,797,617 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647410,778,367 - 10,800,805 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBXN11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl683,686,391 - 83,714,439 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1683,688,709 - 83,714,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UBXN11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120106,465,967 - 106,491,483 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20106,465,966 - 106,491,466 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660339,929,438 - 9,954,930 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubxn11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,318,040 - 10,337,959 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,318,744 - 10,341,269 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBXN11
26 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.11-34.2(chr1:24381206-41401517)x3 copy number gain See cases [RCV000138891] Chr1:24381206..41401517 [GRCh38]
Chr1:24707696..41886350 [GRCh37]
Chr1:24580283..41658937 [NCBI36]
Chr1:1p36.11-34.2		 pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12		 likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
NM_001389556.1(UBXN11):c.800G>A (p.Gly267Asp) single nucleotide variant Inborn genetic diseases [RCV003247328] Chr1:26285516 [GRCh38]
Chr1:26612007 [GRCh37]
Chr1:1p36.11		 uncertain significance
GRCh37/hg19 1p36.11(chr1:26603699-26903828)x3 copy number gain not provided [RCV000847959] Chr1:26603699..26903828 [GRCh37]
Chr1:1p36.11		 uncertain significance
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1		 uncertain significance
NM_001389556.1(UBXN11):c.1255A>G (p.Thr419Ala) single nucleotide variant Inborn genetic diseases [RCV003240418] Chr1:26282686 [GRCh38]
Chr1:26609177 [GRCh37]
Chr1:1p36.11		 uncertain significance
NC_000001.10:g.(?_25870180)_(26795632_?)del deletion Hypercholesterolemia, familial, 4 [RCV001385284] Chr1:25870180..26795632 [GRCh37]
Chr1:1p36.11		 pathogenic
GRCh37/hg19 1p36.11(chr1:26246213-27044118)x3 copy number gain not provided [RCV001829142] Chr1:26246213..27044118 [GRCh37]
Chr1:1p36.11		 uncertain significance
NC_000001.10:g.(?_25870190)_(27278871_?)dup duplication Retinitis pigmentosa 59 [RCV003122734] Chr1:25870190..27278871 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1462GGTCCCGGTCCCGGCCCCAGTCCC[2] (p.488GPGPGPSP[2]) microsatellite Hepatocellular carcinoma [RCV002302680]|Lung cancer [RCV002464570] Chr1:26282329..26282352 [GRCh38]
Chr1:26608820..26608843 [GRCh37]
Chr1:1p36.11		 pathogenic
NM_001389556.1(UBXN11):c.1486_1487del (p.Gly496fs) deletion Hepatocellular carcinoma [RCV002302681]|Lung cancer [RCV002464572]|Small cell lung carcinoma [RCV002464571] Chr1:26282375..26282376 [GRCh38]
Chr1:26608866..26608867 [GRCh37]
Chr1:1p36.11		 pathogenic
NM_001389556.1(UBXN11):c.1458TCCCGG[2] (p.488GP[2]) microsatellite Hepatocellular carcinoma [RCV002302682]|Lung cancer [RCV002464574]|Small cell lung carcinoma [RCV002464573] Chr1:26282387..26282392 [GRCh38]
Chr1:26608878..26608883 [GRCh37]
Chr1:1p36.11		 pathogenic
NM_001389556.1(UBXN11):c.1462GGTCCCGGTCCCGGCCCCAGTCCC[5] (p.Pro511_Cys512insGlyProGlyProGlyProSerProGlyProGlyProGlyProSerPro) microsatellite Hepatocellular carcinoma [RCV002302694]|Lung cancer [RCV002464579] Chr1:26282328..26282329 [GRCh38]
Chr1:26608819..26608820 [GRCh37]
Chr1:1p36.11		 pathogenic
NM_001389556.1(UBXN11):c.1521_1527del (p.Gly508fs) deletion Hepatocellular carcinoma [RCV002302695]|Lung cancer [RCV002464580] Chr1:26282335..26282341 [GRCh38]
Chr1:26608826..26608832 [GRCh37]
Chr1:1p36.11		 pathogenic
NM_001389556.1(UBXN11):c.1462GGTCCCGGTCCCGGCCCCAGTCCC[4] (p.Pro511_Cys512insGlyProGlyProGlyProSerPro) microsatellite Hepatocellular carcinoma [RCV002302679]|Lung cancer [RCV002464569] Chr1:26282328..26282329 [GRCh38]
Chr1:26608819..26608820 [GRCh37]
Chr1:1p36.11		 pathogenic
NM_001389556.1(UBXN11):c.1501_1517del (p.Pro501fs) deletion Hepatocellular carcinoma [RCV002302696]|Lung cancer [RCV002464581] Chr1:26282345..26282361 [GRCh38]
Chr1:26608836..26608852 [GRCh37]
Chr1:1p36.11		 pathogenic
NM_001389556.1(UBXN11):c.1464_1541del (p.Gly490_Pro515del) deletion Hepatocellular carcinoma [RCV002302805]|Lung cancer [RCV002464642]|Small cell lung carcinoma [RCV002464641] Chr1:26282321..26282398 [GRCh38]
Chr1:26608812..26608889 [GRCh37]
Chr1:1p36.11		 pathogenic
NM_001389556.1(UBXN11):c.937A>G (p.Met313Val) single nucleotide variant Inborn genetic diseases [RCV002751659] Chr1:26284398 [GRCh38]
Chr1:26610889 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1198C>T (p.Arg400Cys) single nucleotide variant Inborn genetic diseases [RCV002816799] Chr1:26282743 [GRCh38]
Chr1:26609234 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1477C>A (p.Pro493Thr) single nucleotide variant Inborn genetic diseases [RCV002707966] Chr1:26282385 [GRCh38]
Chr1:26608876 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.193C>T (p.Arg65Trp) single nucleotide variant Inborn genetic diseases [RCV002823458] Chr1:26300932 [GRCh38]
Chr1:26627423 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1099C>T (p.Arg367Trp) single nucleotide variant Inborn genetic diseases [RCV002821506] Chr1:26282916 [GRCh38]
Chr1:26609407 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1009C>A (p.Leu337Ile) single nucleotide variant Inborn genetic diseases [RCV002696645] Chr1:26284210 [GRCh38]
Chr1:26610701 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.682C>T (p.Arg228Cys) single nucleotide variant Inborn genetic diseases [RCV002916254] Chr1:26285915 [GRCh38]
Chr1:26612406 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1358C>G (p.Thr453Arg) single nucleotide variant Inborn genetic diseases [RCV002765182] Chr1:26282504 [GRCh38]
Chr1:26608995 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1141G>A (p.Glu381Lys) single nucleotide variant Inborn genetic diseases [RCV002900670] Chr1:26282874 [GRCh38]
Chr1:26609365 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.53C>T (p.Ser18Leu) single nucleotide variant Inborn genetic diseases [RCV002965830] Chr1:26302831 [GRCh38]
Chr1:26629322 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.351C>G (p.His117Gln) single nucleotide variant Inborn genetic diseases [RCV002768962] Chr1:26297431 [GRCh38]
Chr1:26623922 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001803.3(CD52):c.49G>C (p.Val17Leu) single nucleotide variant Inborn genetic diseases [RCV002723888] Chr1:26318066 [GRCh38]
Chr1:26644557 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.317C>G (p.Ala106Gly) single nucleotide variant Inborn genetic diseases [RCV003204416] Chr1:26297465 [GRCh38]
Chr1:26623956 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1124C>T (p.Thr375Met) single nucleotide variant Inborn genetic diseases [RCV003207813] Chr1:26282891 [GRCh38]
Chr1:26609382 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001803.3(CD52):c.43G>C (p.Val15Leu) single nucleotide variant Inborn genetic diseases [RCV003184432] Chr1:26318060 [GRCh38]
Chr1:26644551 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1492G>A (p.Gly498Ser) single nucleotide variant Inborn genetic diseases [RCV003215923] Chr1:26282370 [GRCh38]
Chr1:26608861 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.683G>A (p.Arg228His) single nucleotide variant Inborn genetic diseases [RCV003359010] Chr1:26285914 [GRCh38]
Chr1:26612405 [GRCh37]
Chr1:1p36.11		 likely benign
NM_001389556.1(UBXN11):c.785G>A (p.Arg262Gln) single nucleotide variant Inborn genetic diseases [RCV003375088] Chr1:26285531 [GRCh38]
Chr1:26612022 [GRCh37]
Chr1:1p36.11		 uncertain significance
NM_001389556.1(UBXN11):c.1294G>T (p.Val432Phe) single nucleotide variant Inborn genetic diseases [RCV003375941] Chr1:26282568 [GRCh38]
Chr1:26609059 [GRCh37]
Chr1:1p36.11		 uncertain significance
GRCh38/hg38 1p36.33-35.1(chr1:99125-34026935)x3 copy number gain Trisomy 12p [RCV003447845] Chr1:99125..34026935 [GRCh38]
Chr1:1p36.33-35.1		 pathogenic
NM_001803.3(CD52):c.12C>T (p.Phe4=) single nucleotide variant CD52-related condition [RCV003964532] Chr1:26318029 [GRCh38]
Chr1:26644520 [GRCh37]
Chr1:1p36.11		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7828
Count of miRNA genes:995
Interacting mature miRNAs:1235
Transcripts:ENST00000314675, ENST00000357089, ENST00000374215, ENST00000374217, ENST00000374221, ENST00000374222, ENST00000374223, ENST00000421827, ENST00000423664, ENST00000436301, ENST00000442942, ENST00000450041, ENST00000452980, ENST00000472155, ENST00000475591, ENST00000494942, ENST00000496466, ENST00000535108
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1807 1448 1296 227 1629 101 2048 836 2988 276 1341 1505 140 1 1078 1011 4 1
Low 632 1543 430 397 322 364 2308 1361 746 143 119 108 34 126 1777 2 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_028986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001077262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_183008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF370425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF520989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF521017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF521018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL451139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY007163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM987787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA421971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA989799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000314675   ⟹   ENSP00000324721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,281,328 - 26,306,636 (-)Ensembl
RefSeq Acc Id: ENST00000357089   ⟹   ENSP00000349601
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,284 - 26,306,632 (-)Ensembl
RefSeq Acc Id: ENST00000374215   ⟹   ENSP00000363332
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,285,460 - 26,306,609 (-)Ensembl
RefSeq Acc Id: ENST00000374217   ⟹   ENSP00000363334
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,284 - 26,318,363 (-)Ensembl
RefSeq Acc Id: ENST00000374221   ⟹   ENSP00000363338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,284 - 26,306,645 (-)Ensembl
RefSeq Acc Id: ENST00000374222   ⟹   ENSP00000363339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,282 - 26,306,636 (-)Ensembl
RefSeq Acc Id: ENST00000374223   ⟹   ENSP00000363340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,282 - 26,306,620 (-)Ensembl
RefSeq Acc Id: ENST00000421827   ⟹   ENSP00000395165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,296,947 - 26,306,576 (-)Ensembl
RefSeq Acc Id: ENST00000423664   ⟹   ENSP00000394036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,294,205 - 26,306,636 (-)Ensembl
RefSeq Acc Id: ENST00000442942   ⟹   ENSP00000404956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,285,943 - 26,303,016 (-)Ensembl
RefSeq Acc Id: ENST00000450041   ⟹   ENSP00000413448
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,286,028 - 26,306,989 (-)Ensembl
RefSeq Acc Id: ENST00000452980   ⟹   ENSP00000410357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,285,876 - 26,303,167 (-)Ensembl
RefSeq Acc Id: ENST00000472155
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,281 - 26,306,640 (-)Ensembl
RefSeq Acc Id: ENST00000475591
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,282 - 26,306,636 (-)Ensembl
RefSeq Acc Id: ENST00000494942
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,284 - 26,306,633 (-)Ensembl
RefSeq Acc Id: ENST00000496466
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,282,305 - 26,298,026 (-)Ensembl
RefSeq Acc Id: NM_001077262   ⟹   NP_001070730
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,282,282 - 26,306,636 (-)NCBI
GRCh37126,608,773 - 26,644,756 (-)RGD
Build 36126,481,360 - 26,505,782 (-)NCBI Archive
Celera125,005,107 - 25,041,075 (-)RGD
HuRef124,863,104 - 24,898,855 (-)RGD
CHM1_1126,722,043 - 26,746,419 (-)NCBI
T2T-CHM13v2.0126,119,766 - 26,144,086 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001389556   ⟹   NP_001376485
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,282,282 - 26,306,636 (-)NCBI
T2T-CHM13v2.0126,119,766 - 26,144,086 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001389559   ⟹   NP_001376488
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,282,282 - 26,306,636 (-)NCBI
T2T-CHM13v2.0126,119,766 - 26,144,086 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145345   ⟹   NP_663320
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,282,282 - 26,318,355 (-)NCBI
GRCh37126,608,773 - 26,644,756 (-)RGD
Build 36126,481,360 - 26,517,343 (-)NCBI Archive
Celera125,005,107 - 25,041,075 (-)RGD
HuRef124,863,104 - 24,898,855 (-)RGD
CHM1_1126,722,043 - 26,757,960 (-)NCBI
T2T-CHM13v2.0126,119,766 - 26,155,807 (-)NCBI
Sequence:
RefSeq Acc Id: NM_183008   ⟹   NP_892120
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,282,282 - 26,306,636 (-)NCBI
GRCh37126,608,773 - 26,644,756 (-)RGD
Build 36126,481,360 - 26,505,782 (-)NCBI Archive
Celera125,005,107 - 25,041,075 (-)RGD
HuRef124,863,104 - 24,898,855 (-)RGD
CHM1_1126,722,043 - 26,746,419 (-)NCBI
T2T-CHM13v2.0126,119,766 - 26,144,086 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001070730 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376485 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376488 (Get FASTA)   NCBI Sequence Viewer  
  NP_663320 (Get FASTA)   NCBI Sequence Viewer  
  NP_892120 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH38106 (Get FASTA)   NCBI Sequence Viewer  
  AAM74201 (Get FASTA)   NCBI Sequence Viewer  
  AAM74202 (Get FASTA)   NCBI Sequence Viewer  
  AAM76060 (Get FASTA)   NCBI Sequence Viewer  
  AAQ15261 (Get FASTA)   NCBI Sequence Viewer  
  BAC04112 (Get FASTA)   NCBI Sequence Viewer  
  BAC04307 (Get FASTA)   NCBI Sequence Viewer  
  BAC05024 (Get FASTA)   NCBI Sequence Viewer  
  BAF84192 (Get FASTA)   NCBI Sequence Viewer  
  BAH11624 (Get FASTA)   NCBI Sequence Viewer  
  BAH12274 (Get FASTA)   NCBI Sequence Viewer  
  CAH18255 (Get FASTA)   NCBI Sequence Viewer  
  CAH56155 (Get FASTA)   NCBI Sequence Viewer  
  EAX07823 (Get FASTA)   NCBI Sequence Viewer  
  EAX07824 (Get FASTA)   NCBI Sequence Viewer  
  EAX07825 (Get FASTA)   NCBI Sequence Viewer  
  EAX07826 (Get FASTA)   NCBI Sequence Viewer  
  EAX07827 (Get FASTA)   NCBI Sequence Viewer  
  EAX07828 (Get FASTA)   NCBI Sequence Viewer  
  EAX07829 (Get FASTA)   NCBI Sequence Viewer  
  EAX07830 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000324721
  ENSP00000324721.7
  ENSP00000349601
  ENSP00000349601.4
  ENSP00000363332.1
  ENSP00000363334
  ENSP00000363334.2
  ENSP00000363338
  ENSP00000363338.3
  ENSP00000363339
  ENSP00000363339.1
  ENSP00000363340.1
  ENSP00000394036.1
  ENSP00000395165.2
  ENSP00000404956.2
  ENSP00000410357.1
  ENSP00000413448.2
GenBank Protein Q5T124 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_663320   ⟸   NM_145345
- Peptide Label: isoform 1
- UniProtKB: Q5T124 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_892120   ⟸   NM_183008
- Peptide Label: isoform 2
- UniProtKB: Q8NFE4 (UniProtKB/Swiss-Prot),   Q8NFE3 (UniProtKB/Swiss-Prot),   Q8NA18 (UniProtKB/Swiss-Prot),   Q8N9M4 (UniProtKB/Swiss-Prot),   Q8N1L6 (UniProtKB/Swiss-Prot),   Q8IY27 (UniProtKB/Swiss-Prot),   Q71RB3 (UniProtKB/Swiss-Prot),   Q63HM6 (UniProtKB/Swiss-Prot),   Q5T133 (UniProtKB/Swiss-Prot),   Q5T131 (UniProtKB/Swiss-Prot),   Q5T129 (UniProtKB/Swiss-Prot),   Q5T126 (UniProtKB/Swiss-Prot),   Q5T125 (UniProtKB/Swiss-Prot),   Q5T120 (UniProtKB/Swiss-Prot),   Q5T117 (UniProtKB/Swiss-Prot),   D3DPK6 (UniProtKB/Swiss-Prot),   Q8NFE6 (UniProtKB/Swiss-Prot),   Q5T124 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001070730   ⟸   NM_001077262
- Peptide Label: isoform 3
- UniProtKB: Q5T124 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000394036   ⟸   ENST00000423664
RefSeq Acc Id: ENSP00000413448   ⟸   ENST00000450041
RefSeq Acc Id: ENSP00000410357   ⟸   ENST00000452980
RefSeq Acc Id: ENSP00000363334   ⟸   ENST00000374217
RefSeq Acc Id: ENSP00000363332   ⟸   ENST00000374215
RefSeq Acc Id: ENSP00000363338   ⟸   ENST00000374221
RefSeq Acc Id: ENSP00000363339   ⟸   ENST00000374222
RefSeq Acc Id: ENSP00000363340   ⟸   ENST00000374223
RefSeq Acc Id: ENSP00000404956   ⟸   ENST00000442942
RefSeq Acc Id: ENSP00000324721   ⟸   ENST00000314675
RefSeq Acc Id: ENSP00000395165   ⟸   ENST00000421827
RefSeq Acc Id: ENSP00000349601   ⟸   ENST00000357089
RefSeq Acc Id: NP_001376488   ⟸   NM_001389559
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001376485   ⟸   NM_001389556
- Peptide Label: isoform 2
- UniProtKB: Q8NFE4 (UniProtKB/Swiss-Prot),   Q8NFE3 (UniProtKB/Swiss-Prot),   Q8NA18 (UniProtKB/Swiss-Prot),   Q8N9M4 (UniProtKB/Swiss-Prot),   Q8N1L6 (UniProtKB/Swiss-Prot),   Q8IY27 (UniProtKB/Swiss-Prot),   Q71RB3 (UniProtKB/Swiss-Prot),   Q63HM6 (UniProtKB/Swiss-Prot),   Q5T133 (UniProtKB/Swiss-Prot),   Q5T131 (UniProtKB/Swiss-Prot),   Q5T129 (UniProtKB/Swiss-Prot),   Q5T126 (UniProtKB/Swiss-Prot),   Q5T125 (UniProtKB/Swiss-Prot),   Q5T124 (UniProtKB/Swiss-Prot),   Q5T120 (UniProtKB/Swiss-Prot),   Q5T117 (UniProtKB/Swiss-Prot),   D3DPK6 (UniProtKB/Swiss-Prot),   Q8NFE6 (UniProtKB/Swiss-Prot)
Protein Domains
SEP   UBX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5T124-F1-model_v2 AlphaFold Q5T124 1-520 view protein structure

Promoters
RGD ID:6854622
Promoter ID:EPDNEW_H476
Type:initiation region
Name:UBXN11_1
Description:UBX domain protein 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,306,636 - 26,306,696EPDNEW
RGD ID:6787129
Promoter ID:HG_KWN:1490
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000357089,   ENST00000374215,   ENST00000389235,   NM_183008,   OTTHUMT00000009502,   OTTHUMT00000009693,   OTTHUMT00000009694,   OTTHUMT00000009695,   OTTHUMT00000009697,   OTTHUMT00000009698,   OTTHUMT00000096890,   OTTHUMT00000096894,   UC001BLX.1,   UC001BLZ.1,   UC001BMB.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36126,505,616 - 26,506,487 (-)MPROMDB
RGD ID:6787125
Promoter ID:HG_KWN:1492
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_2Hour,   K562,   Lymphoblastoid
Transcripts:ENST00000374222,   NM_145345
Position:
Human AssemblyChrPosition (strand)Source
Build 36126,517,621 - 26,518,121 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30600 AgrOrtholog
COSMIC UBXN11 COSMIC
Ensembl Genes ENSG00000158062 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000314675 ENTREZGENE
  ENST00000314675.11 UniProtKB/Swiss-Prot
  ENST00000357089 ENTREZGENE
  ENST00000357089.8 UniProtKB/Swiss-Prot
  ENST00000374215.5 UniProtKB/TrEMBL
  ENST00000374217 ENTREZGENE
  ENST00000374217.7 UniProtKB/Swiss-Prot
  ENST00000374221 ENTREZGENE
  ENST00000374221.7 UniProtKB/Swiss-Prot
  ENST00000374222 ENTREZGENE
  ENST00000374222.6 UniProtKB/Swiss-Prot
  ENST00000374223.5 UniProtKB/TrEMBL
  ENST00000421827.2 UniProtKB/TrEMBL
  ENST00000423664.5 UniProtKB/TrEMBL
  ENST00000442942.6 UniProtKB/TrEMBL
  ENST00000450041.6 UniProtKB/TrEMBL
  ENST00000452980.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000158062 GTEx
HGNC ID HGNC:30600 ENTREZGENE
Human Proteome Map UBXN11 Human Proteome Map
InterPro NSFL1C_SEP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEP_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBX_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:91544 UniProtKB/Swiss-Prot
NCBI Gene 91544 ENTREZGENE
OMIM 609151 OMIM
PANTHER UBX DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBX DOMAIN-CONTAINING PROTEIN 11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SEP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162408338 PharmGKB
PROSITE SEP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF102848 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3DPK6 ENTREZGENE
  Q5T117 ENTREZGENE
  Q5T118_HUMAN UniProtKB/TrEMBL
  Q5T120 ENTREZGENE
  Q5T124 ENTREZGENE
  Q5T125 ENTREZGENE
  Q5T126 ENTREZGENE
  Q5T129 ENTREZGENE
  Q5T130_HUMAN UniProtKB/TrEMBL
  Q5T131 ENTREZGENE
  Q5T133 ENTREZGENE
  Q63HM6 ENTREZGENE
  Q71RB3 ENTREZGENE
  Q8IY27 ENTREZGENE
  Q8N1L6 ENTREZGENE
  Q8N9M4 ENTREZGENE
  Q8NA18 ENTREZGENE
  Q8NFE3 ENTREZGENE
  Q8NFE4 ENTREZGENE
  Q8NFE6 ENTREZGENE
  UBX11_HUMAN UniProtKB/Swiss-Prot
  X6R8K8_HUMAN UniProtKB/TrEMBL
  X6R8M6_HUMAN UniProtKB/TrEMBL
  X6RDK7_HUMAN UniProtKB/TrEMBL
  X6RDY0_HUMAN UniProtKB/TrEMBL
  X6RIY5_HUMAN UniProtKB/TrEMBL
UniProt Secondary D3DPK6 UniProtKB/Swiss-Prot
  Q5T117 UniProtKB/Swiss-Prot
  Q5T120 UniProtKB/Swiss-Prot
  Q5T125 UniProtKB/Swiss-Prot
  Q5T126 UniProtKB/Swiss-Prot
  Q5T129 UniProtKB/Swiss-Prot
  Q5T131 UniProtKB/Swiss-Prot
  Q5T133 UniProtKB/Swiss-Prot
  Q63HM6 UniProtKB/Swiss-Prot
  Q71RB3 UniProtKB/Swiss-Prot
  Q8IY27 UniProtKB/Swiss-Prot
  Q8N1L6 UniProtKB/Swiss-Prot
  Q8N9M4 UniProtKB/Swiss-Prot
  Q8NA18 UniProtKB/Swiss-Prot
  Q8NFE3 UniProtKB/Swiss-Prot
  Q8NFE4 UniProtKB/Swiss-Prot
  Q8NFE6 UniProtKB/Swiss-Prot