Ubtf (upstream binding transcription factor, RNA polymerase I) - Rat Genome Database
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Gene: Ubtf (upstream binding transcription factor, RNA polymerase I) Mus musculus
Analyze
Symbol: Ubtf
Name: upstream binding transcription factor, RNA polymerase I
RGD ID: 737074
Description: Predicted to have several functions, including RNA polymerase I general transcription initiation factor activity; RNA polymerase I transcription regulatory region sequence-specific DNA binding activity; and scaffold protein binding activity. Involved in cellular response to leukemia inhibitory factor; regulation of transcription, DNA-templated; and transcription elongation from RNA polymerase I promoter. Localizes to nucleolus. Is expressed in several structures, including brain; branchial arch; early conceptus; genitourinary system; and limb. Orthologous to human UBTF (upstream binding transcription factor); PARTICIPATES IN cisplatin drug pathway; RNA polymerase I transcription pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A930005G04Rik; NOR-90; nucleolar transcription factor 1; Tcfubf; transcription factor UBF; UBF; UBF-1; UBF1; upstream-binding factor 1
Orthologs:
Homo sapiens (human) : UBTF (upstream binding transcription factor)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Ubtf (upstream binding transcription factor)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ubtf (upstream binding transcription factor)
Pan paniscus (bonobo/pygmy chimpanzee) : UBTF (upstream binding transcription factor)
Canis lupus familiaris (dog) : UBTF (upstream binding transcription factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ubtf (upstream binding transcription factor)
Sus scrofa (pig) : UBTF (upstream binding transcription factor)
Chlorocebus sabaeus (African green monkey) : UBTF (upstream binding transcription factor)
Heterocephalus glaber (naked mole-rat) : Ubtf (upstream binding transcription factor)
more info ...
Related Pseudogenes: Gm17514   Gm19117   Gm19118   Gm19119   Gm20590   Gm49399  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,195,386 - 102,214,738 (-)NCBI
GRCm3811102,304,560 - 102,323,649 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11102,304,560 - 102,319,742 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711102,165,874 - 102,180,410 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611102,122,081 - 102,132,564 (-)NCBImm8
Celera11114,011,670 - 114,026,179 (-)NCBICelera
Cytogenetic Map11DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1891354   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11404013   PMID:11544199   PMID:11592397   PMID:12477932   PMID:12878164   PMID:12904583   PMID:14610273  
PMID:14612424   PMID:14613934   PMID:14729462   PMID:15169904   PMID:15197263   PMID:15249688   PMID:15282543   PMID:15533945   PMID:15761153   PMID:15782199   PMID:15989966   PMID:16129783  
PMID:16141072   PMID:16141073   PMID:16582105   PMID:17251981   PMID:17443674   PMID:17967808   PMID:18287559   PMID:18676449   PMID:18799693   PMID:19103806   PMID:19521500   PMID:19796622  
PMID:20059953   PMID:20168299   PMID:20168301   PMID:20211142   PMID:20412781   PMID:20439489   PMID:20943765   PMID:21059229   PMID:21546905   PMID:21677750   PMID:21725061   PMID:23562818  
PMID:23892456   PMID:23998422   PMID:24952961   PMID:25121932   PMID:25452314   PMID:26317157   PMID:26984997   PMID:27614293   PMID:28378742   PMID:28715449   PMID:29300972   PMID:30196744  
PMID:32098917  


Genomics

Comparative Map Data
Ubtf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,195,386 - 102,214,738 (-)NCBI
GRCm3811102,304,560 - 102,323,649 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11102,304,560 - 102,319,742 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711102,165,874 - 102,180,410 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611102,122,081 - 102,132,564 (-)NCBImm8
Celera11114,011,670 - 114,026,179 (-)NCBICelera
Cytogenetic Map11DNCBI
UBTF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1744,205,033 - 44,221,626 (-)EnsemblGRCh38hg38GRCh38
GRCh381744,205,036 - 44,221,304 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371742,282,401 - 42,298,994 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361739,637,927 - 39,653,776 (-)NCBINCBI36hg18NCBI36
Build 341739,639,487 - 39,651,190NCBI
Celera1738,991,137 - 39,006,972 (-)NCBI
Cytogenetic Map17q21.31NCBI
HuRef1738,046,143 - 38,062,692 (-)NCBIHuRef
CHM1_11742,517,584 - 42,534,295 (-)NCBICHM1_1
Ubtf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01090,250,275 - 90,265,772 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1090,250,275 - 90,265,017 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01090,036,613 - 90,051,685 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,385,368 - 91,398,458 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11091,400,434 - 91,410,657 (-)NCBI
Celera1085,973,415 - 86,009,030 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Ubtf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,294,251 - 17,302,746 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,294,163 - 17,302,807 (-)NCBIChiLan1.0ChiLan1.0
UBTF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11713,343,349 - 13,356,836 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,343,349 - 13,356,836 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01713,176,228 - 13,191,283 (+)NCBIMhudiblu_PPA_v0panPan3
UBTF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl919,179,174 - 19,189,181 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1919,177,778 - 19,189,805 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ubtf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936541671,178 - 687,485 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBTF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1218,989,836 - 19,006,141 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11218,989,833 - 19,006,145 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,292,305 - 19,302,395 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBTF
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1662,171,666 - 62,182,320 (+)Ensembl
ChlSab1.11662,168,288 - 62,184,902 (+)NCBI
Ubtf
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624795768,627 - 779,174 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187800372103383289Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189978425122082543Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191713782122082543Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191713782122082543Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1193048547112653728Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193338357122082543Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194172953118131898Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194300000119000000Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94546357118131898Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195513139122082543Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195513139122082543Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196246848122082543Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196285639108915558Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196919310122082543Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1197006867110713165Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198461783122082543Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198609643122082543Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199363361122082543Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100167277122082543Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100363360120996339Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101131764122082543Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101613994114581537Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101613994114581537Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101613994114581537Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101613994114581537Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4422
Count of miRNA genes:721
Interacting mature miRNAs:926
Transcripts:ENSMUST00000006754, ENSMUST00000079589, ENSMUST00000107115, ENSMUST00000107117, ENSMUST00000107119, ENSMUST00000107123, ENSMUST00000128016, ENSMUST00000146896, ENSMUST00000173870, ENSMUST00000174302, ENSMUST00000174400, ENSMUST00000174726, ENSMUST00000178839
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001044383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK004961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL954730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ572941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX526629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY705170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY742121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA977198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD807309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK392577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X60831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000006754   ⟹   ENSMUSP00000006754
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,305,924 - 102,319,096 (-)Ensembl
RefSeq Acc Id: ENSMUST00000079589   ⟹   ENSMUSP00000078539
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,305,924 - 102,316,680 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107115   ⟹   ENSMUSP00000102732
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,305,924 - 102,316,704 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107117   ⟹   ENSMUSP00000102734
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,305,924 - 102,317,871 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107119   ⟹   ENSMUSP00000102736
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,305,993 - 102,317,287 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107123   ⟹   ENSMUSP00000102740
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,306,298 - 102,317,635 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128016   ⟹   ENSMUSP00000131930
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,313,609 - 102,316,705 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146896   ⟹   ENSMUSP00000134665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,311,755 - 102,316,675 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173870   ⟹   ENSMUSP00000133611
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,306,486 - 102,319,742 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174302   ⟹   ENSMUSP00000133844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,304,560 - 102,319,096 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174400
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,309,040 - 102,309,908 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174726
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,308,530 - 102,309,440 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178839   ⟹   ENSMUSP00000136310
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11102,304,561 - 102,319,096 (-)Ensembl
RefSeq Acc Id: NM_001044383   ⟹   NP_001037848
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,208,113 (-)NCBI
GRCm3811102,304,560 - 102,317,287 (-)NCBI
MGSCv3711102,165,874 - 102,180,410 (-)RGD
Celera11114,011,673 - 114,026,179 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001302954   ⟹   NP_001289883
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,209,922 (-)NCBI
GRCm3811102,304,560 - 102,319,096 (-)NCBI
Celera11114,011,673 - 114,026,179 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302955   ⟹   NP_001289884
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,209,922 (-)NCBI
GRCm3811102,304,560 - 102,319,096 (-)NCBI
Celera11114,011,673 - 114,026,179 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362544   ⟹   NP_001349473
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,210,418 (-)NCBI
GRCm3811102,304,560 - 102,319,592 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362545   ⟹   NP_001349474
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,207,531 (-)NCBI
GRCm3811102,304,560 - 102,316,705 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362547   ⟹   NP_001349476
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,211,688 (-)NCBI
GRCm3811102,304,560 - 102,320,862 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362548   ⟹   NP_001349477
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,208,697 (-)NCBI
GRCm3811102,304,560 - 102,317,871 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362549   ⟹   NP_001349478
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,207,531 (-)NCBI
GRCm3811102,304,560 - 102,316,705 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362550   ⟹   NP_001349479
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,210,418 (-)NCBI
GRCm3811102,304,560 - 102,319,592 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362551   ⟹   NP_001349480
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,207,531 (-)NCBI
GRCm3811102,304,560 - 102,316,705 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362552   ⟹   NP_001349481
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,204,435 - 102,207,531 (-)NCBI
GRCm3811102,313,609 - 102,316,705 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011551   ⟹   NP_035681
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,195,386 - 102,209,922 (-)NCBI
GRCm3811102,304,560 - 102,319,096 (-)NCBI
MGSCv3711102,165,874 - 102,180,410 (-)RGD
Celera11114,011,673 - 114,026,179 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248888   ⟹   XP_011247190
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,196,817 - 102,208,898 (-)NCBI
GRCm3811102,305,991 - 102,318,055 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314430   ⟹   XP_017169919
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,196,816 - 102,214,738 (-)NCBI
GRCm3811102,305,991 - 102,323,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245777   ⟹   XP_030101637
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,196,817 - 102,214,738 (-)NCBI
GRCm3811102,305,991 - 102,323,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245778   ⟹   XP_030101638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,196,817 - 102,208,106 (-)NCBI
GRCm3811102,305,991 - 102,317,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156510   ⟹   XP_036012403
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911102,196,817 - 102,214,738 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_035681   ⟸   NM_011551
- Peptide Label: isoform 1
- UniProtKB: A2AWT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001037848   ⟸   NM_001044383
- Peptide Label: isoform 2
- UniProtKB: A2AWT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001289884   ⟸   NM_001302955
- Peptide Label: isoform 3
- UniProtKB: A2AWT7 (UniProtKB/TrEMBL),   Q9DBH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001289883   ⟸   NM_001302954
- Peptide Label: isoform 2
- UniProtKB: A2AWT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247190   ⟸   XM_011248888
- Peptide Label: isoform X1
- UniProtKB: A2AWT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169919   ⟸   XM_017314430
- Peptide Label: isoform X2
- UniProtKB: A2AWT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349476   ⟸   NM_001362547
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001349479   ⟸   NM_001362550
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001349473   ⟸   NM_001362544
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001349477   ⟸   NM_001362548
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001349478   ⟸   NM_001362549
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001349480   ⟸   NM_001362551
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001349474   ⟸   NM_001362545
- Peptide Label: isoform 1
RefSeq Acc Id: XP_030101637   ⟸   XM_030245777
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030101638   ⟸   XM_030245778
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001349481   ⟸   NM_001362552
- Peptide Label: isoform 7
RefSeq Acc Id: ENSMUSP00000136310   ⟸   ENSMUST00000178839
RefSeq Acc Id: ENSMUSP00000006754   ⟸   ENSMUST00000006754
RefSeq Acc Id: ENSMUSP00000078539   ⟸   ENSMUST00000079589
RefSeq Acc Id: ENSMUSP00000102732   ⟸   ENSMUST00000107115
RefSeq Acc Id: ENSMUSP00000102734   ⟸   ENSMUST00000107117
RefSeq Acc Id: ENSMUSP00000102736   ⟸   ENSMUST00000107119
RefSeq Acc Id: ENSMUSP00000102740   ⟸   ENSMUST00000107123
RefSeq Acc Id: ENSMUSP00000134665   ⟸   ENSMUST00000146896
RefSeq Acc Id: ENSMUSP00000133844   ⟸   ENSMUST00000174302
RefSeq Acc Id: ENSMUSP00000133611   ⟸   ENSMUST00000173870
RefSeq Acc Id: ENSMUSP00000131930   ⟸   ENSMUST00000128016
RefSeq Acc Id: XP_036012403   ⟸   XM_036156510
- Peptide Label: isoform X1
Protein Domains
HMG box

Promoters
RGD ID:6846929
Promoter ID:MM_ACW:8996
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Lung
Transcripts:UBTF.KSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,168,161 - 102,169,347 (-)MPROMDB
RGD ID:6846926
Promoter ID:MM_ACW:8997
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UBTF.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,170,756 - 102,171,707 (-)MPROMDB
RGD ID:6846928
Promoter ID:MM_ACW:8998
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:UBTF.ISEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,171,911 - 102,172,712 (-)MPROMDB
RGD ID:6822412
Promoter ID:MM_KWN:9971
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:UC007LRI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,173,336 - 102,174,927 (-)MPROMDB
RGD ID:6822411
Promoter ID:MM_KWN:9972
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000079589,   ENSMUST00000107115,   ENSMUST00000107117,   NM_001044383,   OTTMUST00000005527,   OTTMUST00000005531,   UC007LRJ.1,   UC007LRN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,177,906 - 102,179,957 (-)MPROMDB
RGD ID:6822435
Promoter ID:MM_KWN:9973
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK021074_C030013E06RIK,   ENSMUST00000006754,   NM_011551,   OTTMUST00000005530,   UC007LRM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611102,180,186 - 102,181,717 (-)MPROMDB
RGD ID:8676878
Promoter ID:EPDNEW_M16469
Type:initiation region
Name:Ubtf_2
Description:Mus musculus upstream binding transcription factor, RNA polymeraseI , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16470  EPDNEW_M16472  EPDNEW_M16471  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811102,316,699 - 102,316,759EPDNEW
RGD ID:8676880
Promoter ID:EPDNEW_M16470
Type:multiple initiation site
Name:Ubtf_1
Description:Mus musculus upstream binding transcription factor, RNA polymeraseI , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16469  EPDNEW_M16472  EPDNEW_M16471  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811102,317,635 - 102,317,695EPDNEW
RGD ID:8676884
Promoter ID:EPDNEW_M16471
Type:initiation region
Name:Ubtf_3
Description:Mus musculus upstream binding transcription factor, RNA polymeraseI , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16469  EPDNEW_M16470  EPDNEW_M16472  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811102,318,962 - 102,319,022EPDNEW
RGD ID:8676882
Promoter ID:EPDNEW_M16472
Type:initiation region
Name:Ubtf_4
Description:Mus musculus upstream binding transcription factor, RNA polymeraseI , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16469  EPDNEW_M16470  EPDNEW_M16471  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811102,319,100 - 102,319,160EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98512 AgrOrtholog
Ensembl Genes ENSMUSG00000020923 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000006754 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000078539 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000102732 UniProtKB/TrEMBL
  ENSMUSP00000102734 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000102736 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000102740 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000131930 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000133611 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000133844 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000134665 UniProtKB/TrEMBL
  ENSMUSP00000136310 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006754 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000079589 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000107115 UniProtKB/TrEMBL
  ENSMUST00000107117 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000107119 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000107123 UniProtKB/TrEMBL
  ENSMUST00000128016 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000146896 UniProtKB/TrEMBL
  ENSMUST00000173870 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000174302 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000178839 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HMG_box_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21429 UniProtKB/TrEMBL
MGD MGI:98512 ENTREZGENE
NCBI Gene 21429 ENTREZGENE
Pfam HMG_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ubtf PhenoGen
PROSITE HMG_BOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HMG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.2845 ENTREZGENE
UniProt A2AWT5 ENTREZGENE, UniProtKB/TrEMBL
  A2AWT6 ENTREZGENE, UniProtKB/TrEMBL
  A2AWT7 ENTREZGENE, UniProtKB/TrEMBL
  E9Q4A8_MOUSE UniProtKB/TrEMBL
  G3UZW9_MOUSE UniProtKB/TrEMBL
  P25976 ENTREZGENE
  Q05DS1_MOUSE UniProtKB/TrEMBL
  Q9DBH1 ENTREZGENE, UniProtKB/TrEMBL
  UBF1_MOUSE UniProtKB/Swiss-Prot