Canx (calnexin) - Rat Genome Database

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Gene: Canx (calnexin) Mus musculus
Analyze
Symbol: Canx
Name: calnexin
RGD ID: 737069
MGI Page MGI
Description: Predicted to enable apolipoprotein binding activity; calcium ion binding activity; and ionotropic glutamate receptor binding activity. Involved in clathrin-dependent endocytosis and synaptic vesicle endocytosis. Located in endoplasmic reticulum quality control compartment; nuclear membrane; and presynapse. Is expressed in several structures, including brain; genitourinary system; hemolymphoid system gland; intestine; and musculature. Orthologous to human CANX (calnexin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110069N15Rik; AI988026; CN; Cnx; D11Ertd153e
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,184,784 - 50,216,500 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,184,788 - 50,216,500 (-)EnsemblGRCm39 Ensembl
GRCm381150,293,957 - 50,325,673 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,293,961 - 50,325,673 (-)EnsemblGRCm38mm10GRCm38
MGSCv371150,107,459 - 50,139,175 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,137,890 - 50,169,014 (-)NCBIMGSCv36mm8
Celera1154,854,566 - 54,886,282 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(R,R,R)-alpha-tocopherol  (ISO)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP,ISO)
5-fluorouracil  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP,ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bexarotene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
Brodifacoum  (ISO)
C60 fullerene  (ISO)
caffeine  (ISO)
calcidiol  (ISO)
capecitabine  (ISO)
captan  (EXP)
carbon nanotube  (ISO)
carboplatin  (ISO)
CCCP  (ISO)
cefaloridine  (ISO)
chlorogenic acid  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP,ISO)
DDT  (ISO)
deguelin  (ISO)
deoxynivalenol  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (EXP)
diuron  (ISO)
doxorubicin  (ISO)
efavirenz  (ISO)
emodin  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenofibrate  (EXP)
fenpyroximate  (ISO)
ferric oxide  (EXP)
flutamide  (ISO)
folpet  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fructose  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (EXP,ISO)
glyphosate  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
hypochlorous acid  (EXP)
iron(III) nitrilotriacetate  (ISO)
ivermectin  (ISO)
L-serine  (ISO)
lead(0)  (ISO)
menadione  (ISO)
metformin  (ISO)
methidathion  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miglustat  (ISO)
motexafin gadolinium  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel atom  (EXP)
nickel sulfate  (ISO)
nimesulide  (ISO)
okadaic acid  (ISO)
ouabain  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
picoxystrobin  (ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
propiconazole  (EXP)
resveratrol  (ISO)
rimonabant  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
sodium fluoride  (EXP)
streptozocin  (ISO)
succimer  (EXP)
sunitinib  (ISO)
tauroursodeoxycholic acid  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
tunicamycin  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc acetate  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Increase in endoplasmic reticulum stress-related proteins and genes in adipose tissue of obese, insulin-resistant individuals. Boden G, etal., Diabetes. 2008 Sep;57(9):2438-44. Epub 2008 Jun 20.
2. Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cells. Hay JC, etal., Cell 1997 Apr 4;89(1):149-58.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Human, mouse, and rat calnexin cDNA cloning: identification of potential calcium binding motifs and gene localization to human chromosome 5. Tjoelker LW, etal., Biochemistry 1994 Mar 22;33(11):3229-36.
Additional References at PubMed
PMID:7628443   PMID:7730623   PMID:7767000   PMID:8148318   PMID:8188695   PMID:8203019   PMID:8278814   PMID:8621641   PMID:8798466   PMID:8889548   PMID:9034150   PMID:9973410  
PMID:10047538   PMID:10349636   PMID:10469351   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11160382   PMID:11266470   PMID:11408579   PMID:11591392   PMID:11795871   PMID:12119418  
PMID:12370287   PMID:12477932   PMID:12520002   PMID:12589443   PMID:12646573   PMID:12727205   PMID:12805210   PMID:12847083   PMID:12904583   PMID:12927782   PMID:14525949   PMID:14610273  
PMID:14729942   PMID:14731400   PMID:14966132   PMID:15184384   PMID:15452145   PMID:15467828   PMID:15489334   PMID:15572359   PMID:15574464   PMID:15598898   PMID:15677452   PMID:16002696  
PMID:16141072   PMID:16141073   PMID:16204232   PMID:16224065   PMID:16416089   PMID:16467570   PMID:16542650   PMID:16847323   PMID:17090218   PMID:17114649   PMID:17204322   PMID:17208939  
PMID:17435174   PMID:17456771   PMID:17634366   PMID:17643373   PMID:17688421   PMID:17708944   PMID:17913437   PMID:17934213   PMID:18028541   PMID:18061684   PMID:18287559   PMID:18367207  
PMID:18373617   PMID:18457676   PMID:18458083   PMID:18528784   PMID:18799693   PMID:19000738   PMID:19116670   PMID:19136429   PMID:19139267   PMID:19196713   PMID:19334288   PMID:19474315  
PMID:19766735   PMID:19943849   PMID:20049854   PMID:20209053   PMID:20385098   PMID:20400506   PMID:20520781   PMID:20531390   PMID:20568244   PMID:20732873   PMID:20945367   PMID:21172390  
PMID:21190736   PMID:21606205   PMID:21677750   PMID:21747946   PMID:21831887   PMID:21841312   PMID:21873635   PMID:22375059   PMID:22572157   PMID:22643896   PMID:22961085   PMID:23093945  
PMID:23129766   PMID:23650557   PMID:23851254   PMID:24037923   PMID:25147951   PMID:25332179   PMID:25541284   PMID:25586181   PMID:26039991   PMID:26388295   PMID:26582200   PMID:26644582  
PMID:26861875   PMID:27052163   PMID:28174279   PMID:28190767   PMID:28378742   PMID:28437467   PMID:28474670   PMID:28671696   PMID:28768200   PMID:28811369   PMID:29111324   PMID:29515033  
PMID:30188326   PMID:30333137   PMID:30550785   PMID:30655546   PMID:30704515   PMID:30713523   PMID:31330130   PMID:31388001   PMID:31582725   PMID:32015347   PMID:32325033   PMID:32554809  
PMID:32606038   PMID:32783947   PMID:32809973   PMID:33124722   PMID:33601422   PMID:34133714   PMID:34338405   PMID:34613632   PMID:36114006   PMID:36293380   PMID:36400788   PMID:36417873  
PMID:37506696   PMID:38042368  


Genomics

Comparative Map Data
Canx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,184,784 - 50,216,500 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,184,788 - 50,216,500 (-)EnsemblGRCm39 Ensembl
GRCm381150,293,957 - 50,325,673 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,293,961 - 50,325,673 (-)EnsemblGRCm38mm10GRCm38
MGSCv371150,107,459 - 50,139,175 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,137,890 - 50,169,014 (-)NCBIMGSCv36mm8
Celera1154,854,566 - 54,886,282 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.46NCBI
CANX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385179,678,656 - 179,731,641 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5179,678,628 - 179,731,641 (+)EnsemblGRCh38hg38GRCh38
GRCh375179,125,428 - 179,158,642 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365179,058,536 - 179,091,248 (+)NCBINCBI36Build 36hg18NCBI36
Build 345179,058,601 - 179,090,532NCBI
Celera5174,751,027 - 174,783,690 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5173,852,686 - 173,884,832 (+)NCBIHuRef
CHM1_15178,558,332 - 178,591,063 (+)NCBICHM1_1
T2T-CHM13v2.05180,233,830 - 180,286,826 (+)NCBIT2T-CHM13v2.0
Canx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81035,124,941 - 35,157,954 (-)NCBIGRCr8
mRatBN7.21034,623,865 - 34,656,866 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1034,625,191 - 34,656,821 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1039,295,127 - 39,328,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0107,834,377 - 7,867,579 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01034,288,797 - 34,322,002 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01035,800,942 - 35,833,939 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1035,800,942 - 35,833,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01035,562,608 - 35,595,530 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41035,850,944 - 35,883,494 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11035,855,099 - 35,870,453 (-)NCBI
Celera1033,972,278 - 34,005,640 (-)NCBICelera
Cytogenetic Map10q22NCBI
Canx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955408848,808 - 894,362 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955408850,773 - 894,362 (-)NCBIChiLan1.0ChiLan1.0
CANX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24174,621,670 - 174,673,516 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15172,761,209 - 172,813,055 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05174,832,964 - 174,884,804 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15182,166,982 - 182,197,403 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5182,167,012 - 182,197,403 (+)Ensemblpanpan1.1panPan2
CANX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1111,966,612 - 1,998,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl111,927,888 - 1,998,604 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha112,089,958 - 2,121,930 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0111,940,260 - 1,973,222 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl111,940,276 - 1,973,226 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1111,912,686 - 1,944,662 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0111,991,514 - 2,023,492 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0112,232,031 - 2,264,021 (-)NCBIUU_Cfam_GSD_1.0
Canx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213119,842,076 - 119,892,055 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367391,051,240 - 1,086,405 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367391,051,853 - 1,085,658 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CANX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl278,879,033 - 78,915,827 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1278,879,031 - 78,915,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2280,445,609 - 80,482,509 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CANX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12381,422,701 - 81,454,683 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2381,422,693 - 81,482,332 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607512,804,176 - 12,829,375 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Canx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473342,588,680 - 42,616,624 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Canx
1024 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1247
Count of miRNA genes:533
Interacting mature miRNAs:620
Transcripts:ENSMUST00000020637, ENSMUST00000146979, ENSMUST00000153068, ENSMUST00000155801, ENSMUST00000179865
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
13452402Hipmt3_mhippocampal morphometry trait 3 (mouse)114797732550277325Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse

Markers in Region
RH136111  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,315,993 - 50,316,194UniSTSGRCm38
MGSCv371150,129,495 - 50,129,696UniSTSGRCm37
Celera1154,876,602 - 54,876,803UniSTS
Cytogenetic Map11B1.3UniSTS
RH128505  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,294,538 - 50,294,753UniSTSGRCm38
MGSCv371150,108,040 - 50,108,255UniSTSGRCm37
Celera1154,855,147 - 54,855,362UniSTS
Cytogenetic Map11B1.3UniSTS
AI988026  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,295,355 - 50,295,444UniSTSGRCm38
MGSCv371150,108,857 - 50,108,946UniSTSGRCm37
Celera1154,855,964 - 54,856,053UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11696.47UniSTS
D11Pjn2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,306,133 - 50,306,522UniSTSGRCm38
MGSCv371150,119,635 - 50,120,024UniSTSGRCm37
Celera1154,866,742 - 54,867,131UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1127.98UniSTS
D11Ertd153e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,294,975 - 50,295,199UniSTSGRCm38
MGSCv371150,108,477 - 50,108,701UniSTSGRCm37
Celera1154,855,584 - 54,855,808UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1127.0UniSTS
cM Map1130.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK004422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL646002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB857984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX632165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY309447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L18888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L23865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020637   ⟹   ENSMUSP00000020637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,185,294 - 50,216,500 (-)Ensembl
GRCm38.p6 Ensembl1150,294,467 - 50,325,673 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,187,026 - 50,190,205 (-)Ensembl
GRCm38.p6 Ensembl1150,296,199 - 50,299,378 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,188,191 - 50,189,146 (-)Ensembl
GRCm38.p6 Ensembl1150,297,364 - 50,298,319 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,189,665 - 50,191,817 (-)Ensembl
GRCm38.p6 Ensembl1150,298,838 - 50,300,990 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179865   ⟹   ENSMUSP00000137440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,184,788 - 50,216,500 (-)Ensembl
GRCm38.p6 Ensembl1150,293,961 - 50,325,673 (-)Ensembl
RefSeq Acc Id: NM_001110499   ⟹   NP_001103969
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,184,784 - 50,216,500 (-)NCBI
GRCm381150,293,957 - 50,325,673 (-)ENTREZGENE
MGSCv371150,107,459 - 50,139,175 (-)RGD
Celera1154,854,566 - 54,886,282 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110500   ⟹   NP_001103970
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,184,784 - 50,216,500 (-)NCBI
GRCm381150,293,957 - 50,325,673 (-)ENTREZGENE
MGSCv371150,107,459 - 50,139,175 (-)RGD
Celera1154,854,566 - 54,886,282 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007597   ⟹   NP_031623
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,184,784 - 50,216,500 (-)NCBI
GRCm381150,293,957 - 50,325,673 (-)ENTREZGENE
MGSCv371150,107,459 - 50,139,175 (-)RGD
Celera1154,854,566 - 54,886,282 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031623   ⟸   NM_007597
- Peptide Label: precursor
- UniProtKB: P35564 (UniProtKB/Swiss-Prot),   Q5SUC3 (UniProtKB/TrEMBL),   Q3TXE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103969   ⟸   NM_001110499
- Peptide Label: precursor
- UniProtKB: P35564 (UniProtKB/Swiss-Prot),   Q5SUC3 (UniProtKB/TrEMBL),   Q3TXE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103970   ⟸   NM_001110500
- Peptide Label: precursor
- UniProtKB: P35564 (UniProtKB/Swiss-Prot),   Q5SUC3 (UniProtKB/TrEMBL),   Q3TXE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000020637   ⟸   ENSMUST00000020637
RefSeq Acc Id: ENSMUSP00000137440   ⟸   ENSMUST00000179865

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P35564-F1-model_v2 AlphaFold P35564 1-591 view protein structure

Promoters
RGD ID:6820525
Promoter ID:MM_KWN:7240
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000012412
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361150,113,481 - 50,113,981 (-)MPROMDB
RGD ID:6820526
Promoter ID:MM_KWN:7241
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000012413
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361150,113,886 - 50,114,386 (-)MPROMDB
RGD ID:6820523
Promoter ID:MM_KWN:7242
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001110499,   NM_001110500,   NM_007597
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361150,139,001 - 50,139,697 (-)MPROMDB
RGD ID:8674508
Promoter ID:EPDNEW_M15285
Type:initiation region
Name:Canx_1
Description:Mus musculus calnexin , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381150,325,609 - 50,325,669EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88261 AgrOrtholog
Ensembl Genes ENSMUSG00000020368 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000020637 ENTREZGENE
  ENSMUST00000020637.9 UniProtKB/Swiss-Prot
  ENSMUST00000179865 ENTREZGENE
  ENSMUST00000179865.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calret/calnex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calret/calnex_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calreticulin/calnexin_P_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88261 ENTREZGENE
NCBI Gene 12330 ENTREZGENE
PANTHER CALNEXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11073 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calreticulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Canx PhenoGen
PRINTS CALRETICULIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CALRETICULIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALRETICULIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALRETICULIN_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF63887 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CALX_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TXE5 ENTREZGENE, UniProtKB/TrEMBL
  Q5SUC3 ENTREZGENE, UniProtKB/TrEMBL