Canx (calnexin) - Rat Genome Database
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Gene: Canx (calnexin) Mus musculus
Analyze
Symbol: Canx
Name: calnexin
RGD ID: 737069
MGI Page MGI
Description: Is expressed in brain; genitourinary system; liver; and musculature. Orthologous to human CANX (calnexin); PARTICIPATES IN antigen processing and presentation pathway; Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1110069N15Rik; AI988026; CN; Cnx; D11Ertd153e
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,184,784 - 50,216,500 (-)NCBIGRCm39mm39
GRCm39 Ensembl1150,184,788 - 50,216,500 (-)Ensembl
GRCm381150,293,957 - 50,325,673 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,293,961 - 50,325,673 (-)EnsemblGRCm38mm10GRCm38
MGSCv371150,107,459 - 50,139,175 (-)NCBIGRCm37mm9NCBIm37
MGSCv361150,137,890 - 50,169,014 (-)NCBImm8
Celera1154,854,566 - 54,886,282 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-tocopherol  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4-hydroxyphenyl retinamide  (EXP,ISO)
5-fluorouracil  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bexarotene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
Brodifacoum  (ISO)
C60 fullerene  (ISO)
calcidiol  (ISO)
capecitabine  (ISO)
captan  (EXP)
carbon nanotube  (ISO)
carboplatin  (ISO)
CCCP  (ISO)
cefaloridine  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP)
DDT  (ISO)
deoxynivalenol  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (EXP)
diuron  (ISO)
doxorubicin  (ISO)
efavirenz  (ISO)
emodin  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenofibrate  (EXP)
ferric oxide  (EXP)
flutamide  (ISO)
folpet  (EXP)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
hypochlorous acid  (EXP)
iron(III) nitrilotriacetate  (ISO)
menadione  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miglustat  (ISO)
motexafin gadolinium  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel atom  (EXP)
nickel sulfate  (ISO)
nimesulide  (ISO)
okadaic acid  (ISO)
ouabain  (ISO)
ozone  (ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
propiconazole  (EXP)
resveratrol  (ISO)
rimonabant  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
sodium fluoride  (EXP)
succimer  (EXP)
sunitinib  (ISO)
tauroursodeoxycholic acid  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
tunicamycin  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
zinc acetate  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7628443   PMID:7730623   PMID:7767000   PMID:8148318   PMID:8188695   PMID:8203019   PMID:8278814   PMID:8621641   PMID:8798466   PMID:8889548   PMID:9034150   PMID:9973410  
PMID:10047538   PMID:10349636   PMID:10469351   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11160382   PMID:11266470   PMID:11408579   PMID:11591392   PMID:11795871   PMID:12119418  
PMID:12370287   PMID:12477932   PMID:12520002   PMID:12589443   PMID:12646573   PMID:12727205   PMID:12805210   PMID:12847083   PMID:12904583   PMID:12927782   PMID:14525949   PMID:14610273  
PMID:14729942   PMID:14731400   PMID:14966132   PMID:15184384   PMID:15452145   PMID:15467828   PMID:15489334   PMID:15572359   PMID:15598898   PMID:15677452   PMID:16002696   PMID:16141072  
PMID:16141073   PMID:16204232   PMID:16224065   PMID:16416089   PMID:16467570   PMID:16542650   PMID:16847323   PMID:17090218   PMID:17114649   PMID:17204322   PMID:17208939   PMID:17435174  
PMID:17456771   PMID:17634366   PMID:17643373   PMID:17688421   PMID:17708944   PMID:17913437   PMID:18028541   PMID:18061684   PMID:18287559   PMID:18367207   PMID:18373617   PMID:18457676  
PMID:18458083   PMID:18528784   PMID:18799693   PMID:19000738   PMID:19116670   PMID:19136429   PMID:19139267   PMID:19196713   PMID:19334288   PMID:19474315   PMID:19766735   PMID:19943849  
PMID:20049854   PMID:20209053   PMID:20385098   PMID:20400506   PMID:20520781   PMID:20531390   PMID:20568244   PMID:20732873   PMID:20945367   PMID:21172390   PMID:21190736   PMID:21606205  
PMID:21677750   PMID:21747946   PMID:21831887   PMID:21841312   PMID:21873635   PMID:22375059   PMID:22572157   PMID:22643896   PMID:22961085   PMID:23093945   PMID:23129766   PMID:23650557  
PMID:23851254   PMID:24037923   PMID:25147951   PMID:25332179   PMID:25541284   PMID:25586181   PMID:26039991   PMID:26388295   PMID:26582200   PMID:26644582   PMID:26861875   PMID:27052163  
PMID:28174279   PMID:28190767   PMID:28378742   PMID:28437467   PMID:28474670   PMID:28671696   PMID:28768200   PMID:29111324   PMID:29515033   PMID:30188326   PMID:30333137   PMID:30655546  
PMID:30704515   PMID:30713523   PMID:31330130   PMID:31388001   PMID:31582725   PMID:32325033   PMID:32809973  


Genomics

Comparative Map Data
Canx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,184,784 - 50,216,500 (-)NCBIGRCm39mm39
GRCm39 Ensembl1150,184,788 - 50,216,500 (-)Ensembl
GRCm381150,293,957 - 50,325,673 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,293,961 - 50,325,673 (-)EnsemblGRCm38mm10GRCm38
MGSCv371150,107,459 - 50,139,175 (-)NCBIGRCm37mm9NCBIm37
MGSCv361150,137,890 - 50,169,014 (-)NCBImm8
Celera1154,854,566 - 54,886,282 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.46NCBI
CANX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5179,678,628 - 179,731,641 (+)EnsemblGRCh38hg38GRCh38
GRCh385179,678,646 - 179,731,641 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375179,125,428 - 179,158,642 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365179,058,536 - 179,091,248 (+)NCBINCBI36hg18NCBI36
Build 345179,058,601 - 179,090,532NCBI
Celera5174,751,027 - 174,783,690 (+)NCBI
Cytogenetic Map5q35.3NCBI
HuRef5173,852,686 - 173,884,832 (+)NCBIHuRef
CHM1_15178,558,332 - 178,591,063 (+)NCBICHM1_1
Canx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21034,623,865 - 34,656,866 (-)NCBI
Rnor_6.0 Ensembl1035,800,942 - 35,833,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01035,800,942 - 35,833,939 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01035,562,608 - 35,595,530 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41035,850,944 - 35,883,494 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11035,855,099 - 35,870,453 (-)NCBI
Celera1033,972,278 - 34,005,640 (-)NCBICelera
Cytogenetic Map10q22NCBI
Canx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955408848,808 - 894,362 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955408850,773 - 894,362 (-)NCBIChiLan1.0ChiLan1.0
CANX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15182,166,982 - 182,197,403 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5182,167,012 - 182,197,403 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05174,832,964 - 174,884,804 (+)NCBIMhudiblu_PPA_v0panPan3
CANX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl111,927,888 - 1,998,604 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1111,966,612 - 1,998,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Canx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367391,051,853 - 1,085,658 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CANX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl278,879,031 - 78,915,816 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1278,879,031 - 78,915,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2280,445,609 - 80,482,509 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CANX
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12381,422,701 - 81,454,683 (+)NCBI
ChlSab1.1 Ensembl2381,422,693 - 81,482,332 (+)Ensembl
Canx
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473342,588,680 - 42,616,624 (+)NCBI

Position Markers
RH136111  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,315,993 - 50,316,194UniSTSGRCm38
MGSCv371150,129,495 - 50,129,696UniSTSGRCm37
Celera1154,876,602 - 54,876,803UniSTS
Cytogenetic Map11B1.3UniSTS
RH128505  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,294,538 - 50,294,753UniSTSGRCm38
MGSCv371150,108,040 - 50,108,255UniSTSGRCm37
Celera1154,855,147 - 54,855,362UniSTS
Cytogenetic Map11B1.3UniSTS
AI988026  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,295,355 - 50,295,444UniSTSGRCm38
MGSCv371150,108,857 - 50,108,946UniSTSGRCm37
Celera1154,855,964 - 54,856,053UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11696.47UniSTS
D11Pjn2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,306,133 - 50,306,522UniSTSGRCm38
MGSCv371150,119,635 - 50,120,024UniSTSGRCm37
Celera1154,866,742 - 54,867,131UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1127.98UniSTS
D11Ertd153e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381150,294,975 - 50,295,199UniSTSGRCm38
MGSCv371150,108,477 - 50,108,701UniSTSGRCm37
Celera1154,855,584 - 54,855,808UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1127.0UniSTS
cM Map1130.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111868778952687889Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111868778952687889Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111868778952687889Mouse
12801460Intim2_mintima modifier 2 (mouse)111868778952687889Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111939175053391888Mouse
14746971Manh70_mmandible shape 70 (mouse)112001506354015063Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2127257955272579Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112724805750745267Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112724805750745267Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112724805750745267Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112724805750745267Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112724805750745267Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
1300569Eae6b_msusceptibility to experimental allergic encephalomyelitis 6b (mouse)Not determined114005990154203622Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined114005990154203622Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114288179954190238Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1247
Count of miRNA genes:533
Interacting mature miRNAs:620
Transcripts:ENSMUST00000020637, ENSMUST00000146979, ENSMUST00000153068, ENSMUST00000155801, ENSMUST00000179865
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK004422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL646002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB857984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX632165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY309447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L18888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L23865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020637   ⟹   ENSMUSP00000020637
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1150,294,467 - 50,325,673 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146979
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1150,296,199 - 50,299,378 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153068
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1150,297,364 - 50,298,319 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155801
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1150,298,838 - 50,300,990 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179865   ⟹   ENSMUSP00000137440
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1150,293,961 - 50,325,673 (-)Ensembl
RefSeq Acc Id: NM_001110499   ⟹   NP_001103969
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,184,784 - 50,216,500 (-)NCBI
GRCm381150,293,957 - 50,325,673 (-)ENTREZGENE
MGSCv371150,107,459 - 50,139,175 (-)RGD
Celera1154,854,566 - 54,886,282 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110500   ⟹   NP_001103970
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,184,784 - 50,216,500 (-)NCBI
GRCm381150,293,957 - 50,325,673 (-)ENTREZGENE
MGSCv371150,107,459 - 50,139,175 (-)RGD
Celera1154,854,566 - 54,886,282 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007597   ⟹   NP_031623
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,184,784 - 50,216,500 (-)NCBI
GRCm381150,293,957 - 50,325,673 (-)ENTREZGENE
MGSCv371150,107,459 - 50,139,175 (-)RGD
Celera1154,854,566 - 54,886,282 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031623   ⟸   NM_007597
- Peptide Label: precursor
- UniProtKB: P35564 (UniProtKB/Swiss-Prot),   Q5SUC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103969   ⟸   NM_001110499
- Peptide Label: precursor
- UniProtKB: P35564 (UniProtKB/Swiss-Prot),   Q5SUC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103970   ⟸   NM_001110500
- Peptide Label: precursor
- UniProtKB: P35564 (UniProtKB/Swiss-Prot),   Q5SUC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000020637   ⟸   ENSMUST00000020637
RefSeq Acc Id: ENSMUSP00000137440   ⟸   ENSMUST00000179865

Promoters
RGD ID:6820525
Promoter ID:MM_KWN:7240
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000012412
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361150,113,481 - 50,113,981 (-)MPROMDB
RGD ID:6820526
Promoter ID:MM_KWN:7241
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000012413
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361150,113,886 - 50,114,386 (-)MPROMDB
RGD ID:6820523
Promoter ID:MM_KWN:7242
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001110499,   NM_001110500,   NM_007597
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361150,139,001 - 50,139,697 (-)MPROMDB
RGD ID:8674508
Promoter ID:EPDNEW_M15285
Type:initiation region
Name:Canx_1
Description:Mus musculus calnexin , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381150,325,609 - 50,325,669EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88261 AgrOrtholog
Ensembl Genes ENSMUSG00000020368 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000020637 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000137440 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000020637 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000179865 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calret/calnex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calret/calnex_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calreticulin/calnexin_P_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88261 ENTREZGENE
NCBI Gene 12330 ENTREZGENE
PANTHER PTHR11073 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calreticulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Canx PhenoGen
PRINTS CALRETICULIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CALRETICULIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALRETICULIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALRETICULIN_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF63887 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CALX_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TXE5_MOUSE UniProtKB/TrEMBL
  Q5SUC3 ENTREZGENE, UniProtKB/TrEMBL