Reg1 (regenerating islet-derived 1)

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Gene: Reg1 (regenerating islet-derived 1) Mus musculus

Analyze

Symbol:

Reg1

Name:

regenerating islet-derived 1

RGD ID:

737019

MGI Page

MGI

Description:

Is expressed in several structures, including esophagus; lung; and pancreas. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,2',4,4',5,5'-hexachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

islet of Langerhans regenerating protein 1; lithostathine-1; pancreatic stone protein 1; pancreatic thread protein 1; PSP; PTP; REG 1; regenerating islet-derived, mouse homolog 1; regenerating protein 1

RGD Orthologs

Human

Rat

Squirrel

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	REG1A (regenerating family member 1 alpha)	HGNC	Ensembl, HGNC, HomoloGene, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Rattus norvegicus (Norway rat):	Reg1a (regenerating family member 1 alpha)	HGNC	OMA, HomoloGene, Panther, PhylomeDB, OrthoDB, Ensembl
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Reg1a (regenerating family member 1 alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Reg1a (regenerating family member 1 alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	REG1B (regenerating family member 1 beta)	HGNC	EggNOG, HGNC, OMA, OrthoDB, Panther, PhylomeDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Reg1a (regenerating family member 1 alpha)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	REG1A (regenerating family member 1 alpha)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Homo sapiens (human):	REG1B (regenerating family member 1 beta)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	si:dkey-241l7.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	lectin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	si:ch211-125e6.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	si:ch211-125e6.12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	si:dkey-241l7.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	si:dkey-241l7.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	si:dkey-241l7.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	si:dkeyp-75b4.10	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	si:ch211-125e6.11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	si:dkey-9i23.4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	zgc:172053	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	clec-178	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	Y38H6C.8	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector)
Drosophila melanogaster (fruit fly):	rgn	Alliance	DIOPT (PhylomeDB\|Roundup)
Caenorhabditis elegans (roundworm):	clec-86	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	78,402,966 - 78,405,651 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	78,399,694 - 78,405,650 (+)	Ensembl
GRCm38	6	78,425,983 - 78,428,668 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	78,422,711 - 78,428,667 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	78,375,977 - 78,378,660 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	78,355,492 - 78,358,175 (+)	NCBI			mm8
Celera	6	80,448,960 - 80,451,643 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	34.77	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

Calcific Pancreatitis (ISO)

Carcinoid Tumor (ISO)

cholangiocarcinoma (ISO)

Chronic Pancreatitis (ISO)

colon cancer (ISO)

Experimental Diabetes Mellitus (ISO)

Experimental Pancreatitis, Acute (ISO)

Hypergastrinemia (ISO)

Metabolic Syndrome (ISO)

myocardial infarction (ISO)

Sjogren's syndrome (ISO)

Stomach Neoplasms (EXP)

type 1 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (EXP)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

acetylsalicylic acid (ISO)

aflatoxin B1 (ISO)

ammonium chloride (ISO)

benzalkonium chloride (EXP)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

butanal (ISO)

captan (EXP)

carbon nanotube (EXP)

ciguatoxin CTX1B (EXP)

folpet (EXP)

furan (ISO)

heptanal (ISO)

hexanal (ISO)

hydralazine (ISO)

irinotecan (ISO)

lead diacetate (EXP)

loxtidine (EXP)

N-methyl-N-nitrosourea (EXP)

nonanal (ISO)

octanal (ISO)

ozone (EXP)

PCB138 (EXP)

pentanal (ISO)

pirinixic acid (EXP)

propanal (ISO)

sodium dichromate (ISO)

sulindac sulfide (ISO)

titanium dioxide (EXP)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antimicrobial humoral immune response mediated by antimicrobial peptide (IBA)

calcium ion homeostasis (ISO)

cell wall disruption in other organism (IBA)

cellular response to chemokine (ISO)

cellular response to gastrin (ISO)

liver regeneration (ISO)

midgut development (ISO)

negative regulation of cell population proliferation (ISO)

pancreas regeneration (ISO)

positive regulation of acinar cell proliferation (ISO)

positive regulation of cell population proliferation (IBA)

positive regulation of dendrite extension (ISO)

positive regulation of gene expression (ISO)

positive regulation of type B pancreatic cell proliferation (ISO)

response to acetylsalicylate (ISO)

response to gastrin (ISO)

response to growth hormone-releasing hormone (ISO)

response to hypoxia (ISO)

response to nutrient levels (ISO)

response to organic cyclic compound (ISO)

response to peptide hormone (IBA)

response to water-immersion restraint stress (ISO)

wound healing (ISO)

Cellular Component

basal part of cell (ISO)

collagen-containing extracellular matrix (HDA)

cytosol (ISO)

dendrite membrane (ISO)

extracellular region (IEA)

extracellular space (IBA,ISO)

growth cone (ISO)

neuronal cell body membrane (ISO)

perinuclear region of cytoplasm (ISO)

protein-containing complex (ISO)

zymogen granule (ISO)

Molecular Function

carbohydrate binding (IEA)

growth factor activity (ISO)

identical protein binding (ISO)

oligosaccharide binding (IBA)

peptidoglycan binding (IBA)

phosphatase binding (ISO)

protein binding (ISO)

protein phosphatase binding (ISO)

signaling receptor activity (IBA)

signaling receptor binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal pancreas physiology (IAGP)

References

References - curated


1.	Chen JJ, etal., Exp Biol Med (Maywood). 2011 Jul;236(7):823-31. doi: 10.1258/ebm.2011.010399. Epub 2011 Jun 17.
2.	De Caro A, etal., Biochimie. 1988 Sep;70(9):1209-14.
3.	de la Monte SM, etal., J Clin Invest. 1990 Sep;86(3):1004-13.
4.	Gross DJ, etal., Endocrinology. 1998 May;139(5):2369-74.
5.	Harada K, etal., Hepatology. 2001 May;33(5):1036-42.
6.	Higham AD, etal., Gastroenterology. 1999 Jun;116(6):1310-8.
7.	Kiji T, etal., Am J Physiol Heart Circ Physiol. 2005 Jul;289(1):H277-84. Epub 2005 Mar 18.
8.	Kimura T, etal., Clin Exp Immunol. 2009 Jan;155(1):16-20. doi: 10.1111/j.1365-2249.2008.03806.x. Epub 2008 Nov 6.
9.	Meili S, etal., Cell Tissue Res. 2003 Jun;312(3):291-9. Epub 2003 May 23.
10.	MGD and Homologene mouse data transfer
11.	MGD data from the GO Consortium
12.	MGD IEA
13.	Ohno T, etal., Endocr J. 1995 Oct;42(5):649-53.
14.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
15.	Pin CL, etal., J Cell Biol 2001 Nov 12;155(4):519-30. Epub 2001 Nov 5.
16.	RGD automated import pipeline
17.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18.	RGD automated import pipeline for gene-chemical interactions
19.	Rouquier S, etal., J Biol Chem 1991 Jan 15;266(2):786-91.
20.	Terazono K, etal., J Biol Chem 1988 Feb 15;263(5):2111-4.
21.	Viterbo D, etal., JOP. 2009 Jan 8;10(1):15-23.
22.	Watanabe T, etal., J Biol Chem. 1990 May 5;265(13):7432-9.
23.	Watanabe T, etal., Proc Natl Acad Sci U S A. 1994 Apr 26;91(9):3589-92.

Additional References at PubMed

PMID:8340418	PMID:8522062	PMID:8751373	PMID:8808978	PMID:8863190	PMID:8903735	PMID:9055810	PMID:10349636	PMID:10526060	PMID:10767532	PMID:11042159	PMID:11076861
PMID:11097844	PMID:11217851	PMID:12475793	PMID:12477932	PMID:15489334	PMID:16141072	PMID:16141073	PMID:16405968	PMID:16909126	PMID:17463184	PMID:18554416	PMID:18712671
PMID:19969026	PMID:20050810	PMID:20157293	PMID:20508157	PMID:21267068	PMID:21677750	PMID:21873635	PMID:22037600	PMID:22158612	PMID:23269672	PMID:23986224	PMID:24587207
PMID:25747353	PMID:27055226	PMID:28071719	PMID:28415799	PMID:29339122	PMID:29935186	PMID:30914711	PMID:31166710

Genomics

Comparative Map Data

Reg1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	78,402,966 - 78,405,651 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	78,399,694 - 78,405,650 (+)	Ensembl
GRCm38	6	78,425,983 - 78,428,668 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	78,422,711 - 78,428,667 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	78,375,977 - 78,378,660 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	78,355,492 - 78,358,175 (+)	NCBI			mm8
Celera	6	80,448,960 - 80,451,643 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	34.77	NCBI

REG1A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	79,120,362 - 79,123,409 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	79,120,488 - 79,123,409 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	79,347,614 - 79,350,535 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	79,201,092 - 79,204,053 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	79,259,238 - 79,262,200	NCBI
Celera	2	79,176,313 - 79,179,273 (+)	NCBI
Cytogenetic Map	2	p12	NCBI
HuRef	2	79,082,895 - 79,085,855 (+)	NCBI		HuRef
CHM1_1	2	79,277,113 - 79,280,074 (+)	NCBI		CHM1_1

Reg1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	110,892,451 - 110,895,115 (+)	NCBI
Rnor_6.0 Ensembl	4	109,497,962 - 109,501,082 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	109,497,962 - 109,500,626 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	174,199,389 - 174,202,053 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	112,386,071 - 112,389,205 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	112,630,551 - 112,633,685 (+)	NCBI
Celera	4	99,924,400 - 99,927,064 (+)	NCBI		Celera
Cytogenetic Map	4	q33	NCBI

Reg1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936556	4,873,331 - 4,875,608 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

Reg1a
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	23,993,755 - 23,995,923 (+)	NCBI

Position Markers

D14010

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	78,428,458 - 78,428,590	UniSTS	GRCm38
MGSCv37	6	78,378,452 - 78,378,584	UniSTS	GRCm37
Celera	6	80,451,435 - 80,451,567	UniSTS
Cytogenetic Map	6	C-D	UniSTS

Reg1

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	6	C3	UniSTS
Cytogenetic Map	6	C-D	UniSTS
cM Map	6	33.5	UniSTS
cM Map	6		UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
26884441	Sklq3_m	skull length QTL 3, 5 week (mouse)					6	7600000	80600000	Mouse
13208564	Bmiq7_m	body mass index QTL 7 (mouse)					6	25000000	80000000	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1301254	Skts11_m	skin tumor susceptibility 11 (mouse)			Not determined		6	51179150	85179300	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71322621	86275719	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	119
Count of miRNA genes:	97
Interacting mature miRNAs:	103
Transcripts:	ENSMUST00000079926
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_009042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB035215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB035219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC113058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC028761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE848902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D14010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000079926 ⟹ ENSMUSP00000078847

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	78,425,983 - 78,428,666 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000204601 ⟹ ENSMUSP00000144840

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	78,422,771 - 78,428,667 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000204687 ⟹ ENSMUSP00000145161

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	78,422,711 - 78,428,667 (+)	Ensembl

RefSeq Acc Id:

NM_009042 ⟹ NP_033068

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	78,402,966 - 78,405,651 (+)	NCBI
GRCm38	6	78,425,983 - 78,428,668 (+)	NCBI
MGSCv37	6	78,375,977 - 78,378,660 (+)	RGD
Celera	6	80,448,960 - 80,451,643 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

AAGACACCTTGGTCTCAGCCTGCAGAGATCGTTGAGTTGCATCCTAAGCAAAAGACTGTCTGCT
GCTCAGCATGGCTAGGAACGCCTACTTCATCCTGCTCTCATGCCTGATCGTCCTGTCTCCAAGC
CAAGGCCAGGAAGCTGAAGAAGACCTGCCATCTGCCAGGATCAGTTGCCCAGAAGGTTCCAATG
CCTACAGCTCCTATTGTTACTACTTCACTGAAGACCGTTTAACTTGGGCTGATGCAGATCTTTT
TTGCCAGAACATGAATTCAGGCTACCTGGTGTCAGTTCTCAGTCAGGCTGAGGGCAACTTTGTG
GCCTCTCTGATTAAGGAGAGTGGCACTACAGACGCCAATGTCTGGACTGGACTCCATGATCCCA
AAAGGAATCGTCGCTGGCACTGGAGCAGTGGGTCTCTGTTTCTCTACAAATCCTGGGCAACTGG
GTCTCCTAACAGTTCCAATCGTGGCTACTGTGTATCTCTGACTTCAAACACAGGATACAAGAAA
TGGAAGGATGACAACTGTGATGCCCAATACTCATTTGTCTGCAAGTTCAAAGGCTGAAGTCACC
TGAAAAAAAATAGTCATATAAAGCAAAATTGAAATTACTATAGTGTCAGAAATTAAATTGGACC
ATCTATCAAAAGCAAATTAGATCCTGTCTTCCTGGAGAGACATTCTTGCTTCACTGTCCTATGG
TACCTGTATCTCCATTATTTTCTGGAAATTTGCACAACTGAAATAAAAACACCTTTACAATGTT
GCAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_033068	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH28761	(Get FASTA)	NCBI Sequence Viewer
	BAA03111	(Get FASTA)	NCBI Sequence Viewer
	BAC35967	(Get FASTA)	NCBI Sequence Viewer
	BAE21692	(Get FASTA)	NCBI Sequence Viewer
	BAE35794	(Get FASTA)	NCBI Sequence Viewer
	EDK99019	(Get FASTA)	NCBI Sequence Viewer
	P43137	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_033068 ⟸ NM_009042
- Peptide Label:	precursor
- UniProtKB:	P43137 (UniProtKB/Swiss-Prot), Q3TV26 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARNAYFILLSCLIVLSPSQGQEAEEDLPSARISCPEGSNAYSSYCYYFTEDRLTWADADLFCQ NMNSGYLVSVLSQAEGNFVASLIKESGTTDANVWTGLHDPKRNRRWHWSSGSLFLYKSWATGSP NSSNRGYCVSLTSNTGYKKWKDDNCDAQYSFVCKFKG hide sequence

RefSeq Acc Id:

ENSMUSP00000078847 ⟸ ENSMUST00000079926

RefSeq Acc Id:

ENSMUSP00000144840 ⟸ ENSMUST00000204601

RefSeq Acc Id:

ENSMUSP00000145161 ⟸ ENSMUST00000204687

Protein Domains

C-type lectin

Promoters

RGD ID:

6890072

Promoter ID:

EPDNEW_M8486

Type:

multiple initiation site

Name:

Reg1_1

Description:

Mus musculus regenerating islet-derived 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	78,425,983 - 78,426,043	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:97895	AgrOrtholog
Ensembl Genes	ENSMUSG00000059654	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000078847	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000144840	UniProtKB/Swiss-Prot
	ENSMUSP00000145161	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000079926	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000204601	UniProtKB/Swiss-Prot
	ENSMUST00000204687	UniProtKB/Swiss-Prot
Gene3D-CATH	3.10.100.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C-type_lectin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:19692	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:97895	ENTREZGENE
NCBI Gene	19692	ENTREZGENE
Pfam	Lectin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Reg1	PhenoGen
PROSITE	C_TYPE_LECTIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C_TYPE_LECTIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CLECT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56436	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	LIT1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3TV26	ENTREZGENE, UniProtKB/TrEMBL
	Q8C6F9_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD