Acox3 (acyl-Coenzyme A oxidase 3, pristanoyl) - Rat Genome Database

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Gene: Acox3 (acyl-Coenzyme A oxidase 3, pristanoyl) Mus musculus
Analyze
Symbol: Acox3
Name: acyl-Coenzyme A oxidase 3, pristanoyl
RGD ID: 736893
MGI Page MGI
Description: Predicted to enable fatty acid binding activity; flavin adenine dinucleotide binding activity; and pristanoyl-CoA oxidase activity. Predicted to be involved in fatty acid beta-oxidation using acyl-CoA oxidase and lipid homeostasis. Predicted to act upstream of or within fatty acid beta-oxidation. Located in mitochondrion. Is expressed in several structures, including brain; colon; genitourinary system; heart; and lung. Orthologous to human ACOX3 (acyl-CoA oxidase 3, pristanoyl).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BI685180; branched-chain acyl-CoA oxidase; BRCACox; EST-s; EST-s59; PC; PCOX; peroxisomal acyl-coenzyme A oxidase 3; pristanoyl-CoA oxidase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,740,293 - 35,772,397 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,740,384 - 35,772,696 (+)EnsemblGRCm39 Ensembl
GRCm38535,582,981 - 35,614,208 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,583,040 - 35,615,352 (+)EnsemblGRCm38mm10GRCm38
MGSCv37535,925,709 - 35,956,450 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36535,899,921 - 35,930,662 (+)NCBIMGSCv36mm8
Celera533,056,108 - 33,087,085 (+)NCBICelera
Cytogenetic Map5B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Spermatogonia-dependent expression of testicular genes in mice. Tanaka K, etal., Dev Biol 2002 Jun 15;246(2):466-79.
Additional References at PubMed
PMID:10349636   PMID:10806321   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15178647   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18287559   PMID:18614015   PMID:18799693   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Acox3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,740,293 - 35,772,397 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,740,384 - 35,772,696 (+)EnsemblGRCm39 Ensembl
GRCm38535,582,981 - 35,614,208 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,583,040 - 35,615,352 (+)EnsemblGRCm38mm10GRCm38
MGSCv37535,925,709 - 35,956,450 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36535,899,921 - 35,930,662 (+)NCBIMGSCv36mm8
Celera533,056,108 - 33,087,085 (+)NCBICelera
Cytogenetic Map5B3NCBI
ACOX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3848,355,305 - 8,440,723 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl48,366,282 - 8,440,723 (-)EnsemblGRCh38hg38GRCh38
GRCh3748,368,009 - 8,442,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3648,418,909 - 8,493,352 (-)NCBINCBI36Build 36hg18NCBI36
Build 3448,486,518 - 8,560,499NCBI
Celera48,261,321 - 8,335,759 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef48,287,364 - 8,362,315 (-)NCBIHuRef
CHM1_148,366,366 - 8,440,788 (-)NCBICHM1_1
T2T-CHM13v2.048,346,177 - 8,420,469 (-)NCBIT2T-CHM13v2.0
Acox3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21475,133,986 - 75,176,767 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,094,676 - 75,176,205 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1479,575,514 - 79,629,707 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01480,816,379 - 80,870,575 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01477,261,371 - 77,315,558 (-)NCBIRnor_WKY
Rnor_6.01480,313,202 - 80,358,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,314,431 - 80,355,420 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,942,668 - 79,982,780 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,769,000 - 80,809,809 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11480,771,390 - 80,812,200 (-)NCBI
Celera1474,065,866 - 74,104,532 (-)NCBICelera
Cytogenetic Map14q21NCBI
Acox3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,656,144 - 2,685,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,653,502 - 2,690,452 (+)NCBIChiLan1.0ChiLan1.0
ACOX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.148,432,788 - 8,506,499 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl48,432,788 - 8,494,157 (-)Ensemblpanpan1.1panPan2
ACOX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1360,154,012 - 60,205,696 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl360,153,775 - 60,203,554 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha362,804,141 - 62,856,135 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0360,631,684 - 60,683,139 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl360,628,819 - 60,680,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1360,123,908 - 60,162,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0360,327,224 - 60,379,691 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0360,685,106 - 60,736,638 (-)NCBIUU_Cfam_GSD_1.0
Acox3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528565,992,882 - 66,029,673 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647719,694,555 - 19,731,386 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647719,696,274 - 19,731,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACOX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl82,716,918 - 2,770,801 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.182,716,913 - 2,756,221 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.284,391,443 - 4,418,723 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACOX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12744,313,297 - 44,366,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666051635,738 - 689,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acox3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475523,995,089 - 24,024,083 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475523,995,256 - 24,026,581 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1697
Count of miRNA genes:697
Interacting mature miRNAs:880
Transcripts:ENSMUST00000068563, ENSMUST00000068947, ENSMUST00000114237, ENSMUST00000114238, ENSMUST00000127641, ENSMUST00000154796, ENSMUST00000156125
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse

Markers in Region
26.MMHAP81FRA11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38535,582,552 - 35,582,751UniSTSGRCm38
MGSCv37535,925,201 - 35,925,400UniSTSGRCm37
Celera533,055,600 - 33,055,799UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map5B3UniSTS
Whitehead_YAC5 UniSTS
D5Mit352  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38535,614,967 - 35,615,076UniSTSGRCm38
MGSCv37535,957,616 - 35,957,725UniSTSGRCm37
Celera533,088,287 - 33,088,400UniSTS
Cytogenetic Map5B1UniSTS
cM Map520.0UniSTS
Whitehead Genetic515.3UniSTS
Acox3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5B1UniSTS
cM Map5 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ278430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB873037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB873053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB882899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB882915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB894228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB894244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC930446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC930462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC940308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC940324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC951637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC951653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000068563   ⟹   ENSMUSP00000067178
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,740,446 - 35,769,220 (+)Ensembl
GRCm38.p6 Ensembl535,583,102 - 35,611,876 (+)Ensembl
RefSeq Acc Id: ENSMUST00000068947   ⟹   ENSMUSP00000063412
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,740,384 - 35,771,145 (+)Ensembl
GRCm38.p6 Ensembl535,583,040 - 35,613,801 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114237   ⟹   ENSMUSP00000109875
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,740,395 - 35,769,951 (+)Ensembl
GRCm38.p6 Ensembl535,583,051 - 35,612,607 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114238   ⟹   ENSMUSP00000109876
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,740,867 - 35,769,213 (+)Ensembl
GRCm38.p6 Ensembl535,583,523 - 35,611,869 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127641
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,740,436 - 35,744,763 (+)Ensembl
GRCm38.p6 Ensembl535,583,092 - 35,587,419 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154796
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,764,303 - 35,767,263 (+)Ensembl
GRCm38.p6 Ensembl535,606,959 - 35,609,919 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156125   ⟹   ENSMUSP00000119216
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,740,422 - 35,746,068 (+)Ensembl
GRCm38.p6 Ensembl535,583,078 - 35,588,724 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201106   ⟹   ENSMUSP00000144658
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,761,958 - 35,765,678 (+)Ensembl
GRCm38.p6 Ensembl535,604,614 - 35,608,334 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201659
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,767,443 - 35,769,231 (+)Ensembl
GRCm38.p6 Ensembl535,610,099 - 35,611,887 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202266   ⟹   ENSMUSP00000144499
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,740,423 - 35,772,696 (+)Ensembl
GRCm38.p6 Ensembl535,583,079 - 35,615,352 (+)Ensembl
RefSeq Acc Id: NM_001357018   ⟹   NP_001343947
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,378 - 35,771,145 (+)NCBI
GRCm38535,583,034 - 35,613,801 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357019   ⟹   NP_001343948
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,378 - 35,771,145 (+)NCBI
GRCm38535,583,034 - 35,613,801 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357020   ⟹   NP_001343949
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,378 - 35,769,244 (+)NCBI
GRCm38535,583,034 - 35,611,900 (+)NCBI
Sequence:
RefSeq Acc Id: NM_030721   ⟹   NP_109646
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,378 - 35,771,145 (+)NCBI
GRCm38535,583,034 - 35,613,801 (+)NCBI
MGSCv37535,925,709 - 35,956,450 (+)RGD
Celera533,056,108 - 33,087,085 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504196   ⟹   XP_006504259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,375 - 35,769,231 (+)NCBI
GRCm38535,582,981 - 35,611,887 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504197   ⟹   XP_006504260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,317 - 35,769,231 (+)NCBI
GRCm38535,583,231 - 35,611,887 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504199   ⟹   XP_006504262
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,293 - 35,772,397 (+)NCBI
GRCm38535,583,046 - 35,614,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504200   ⟹   XP_006504263
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,293 - 35,769,452 (+)NCBI
GRCm38535,583,046 - 35,613,801 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240801   ⟹   XP_011239103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,330 - 35,769,231 (+)NCBI
GRCm38535,583,034 - 35,611,887 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321179   ⟹   XP_017176668
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,293 - 35,769,231 (+)NCBI
GRCm38535,583,046 - 35,611,887 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165625   ⟹   XP_036021518
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,405 - 35,771,145 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165626   ⟹   XP_036021519
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,390 - 35,769,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165627   ⟹   XP_036021520
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,390 - 35,771,145 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165628   ⟹   XP_036021521
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,740,390 - 35,771,145 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001343947 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343948 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343949 (Get FASTA)   NCBI Sequence Viewer  
  NP_109646 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504259 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504260 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504262 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504263 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239103 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176668 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021518 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021519 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021520 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021521 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH44725 (Get FASTA)   NCBI Sequence Viewer  
  AAH55019 (Get FASTA)   NCBI Sequence Viewer  
  BAC26136 (Get FASTA)   NCBI Sequence Viewer  
  BAE42553 (Get FASTA)   NCBI Sequence Viewer  
  CAC20692 (Get FASTA)   NCBI Sequence Viewer  
  CBF60561 (Get FASTA)   NCBI Sequence Viewer  
  CBF60569 (Get FASTA)   NCBI Sequence Viewer  
  CBF65715 (Get FASTA)   NCBI Sequence Viewer  
  CBF65723 (Get FASTA)   NCBI Sequence Viewer  
  CBF73083 (Get FASTA)   NCBI Sequence Viewer  
  CBF73100 (Get FASTA)   NCBI Sequence Viewer  
  CBU85805 (Get FASTA)   NCBI Sequence Viewer  
  CBU85813 (Get FASTA)   NCBI Sequence Viewer  
  CBU90586 (Get FASTA)   NCBI Sequence Viewer  
  CBU90594 (Get FASTA)   NCBI Sequence Viewer  
  CBU96002 (Get FASTA)   NCBI Sequence Viewer  
  CBU96010 (Get FASTA)   NCBI Sequence Viewer  
  EDL37488 (Get FASTA)   NCBI Sequence Viewer  
  EDL37489 (Get FASTA)   NCBI Sequence Viewer  
  EDL37490 (Get FASTA)   NCBI Sequence Viewer  
  Q9EPL9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_109646   ⟸   NM_030721
- Peptide Label: isoform a
- UniProtKB: Q80UQ0 (UniProtKB/Swiss-Prot),   Q9EPL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006504262   ⟸   XM_006504199
- Peptide Label: isoform X3
- UniProtKB: Q3TAW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504263   ⟸   XM_006504200
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006504259   ⟸   XM_006504196
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006504260   ⟸   XM_006504197
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011239103   ⟸   XM_011240801
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017176668   ⟸   XM_017321179
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001343947   ⟸   NM_001357018
- Peptide Label: isoform a
- UniProtKB: Q80UQ0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343948   ⟸   NM_001357019
- Peptide Label: isoform a
- UniProtKB: Q80UQ0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343949   ⟸   NM_001357020
- Peptide Label: isoform b
- UniProtKB: Q8C178 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000144499   ⟸   ENSMUST00000202266
RefSeq Acc Id: ENSMUSP00000063412   ⟸   ENSMUST00000068947
RefSeq Acc Id: ENSMUSP00000067178   ⟸   ENSMUST00000068563
RefSeq Acc Id: ENSMUSP00000109875   ⟸   ENSMUST00000114237
RefSeq Acc Id: ENSMUSP00000109876   ⟸   ENSMUST00000114238
RefSeq Acc Id: ENSMUSP00000144658   ⟸   ENSMUST00000201106
RefSeq Acc Id: ENSMUSP00000119216   ⟸   ENSMUST00000156125
RefSeq Acc Id: XP_036021521   ⟸   XM_036165628
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036021520   ⟸   XM_036165627
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036021519   ⟸   XM_036165626
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036021518   ⟸   XM_036165625
- Peptide Label: isoform X2
- UniProtKB: Q80UQ0 (UniProtKB/Swiss-Prot)
Protein Domains
ACOX   Acyl-CoA_dh_1   Acyl-CoA_dh_M

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPL9-F1-model_v2 AlphaFold Q9EPL9 1-700 view protein structure

Promoters
RGD ID:6886510
Promoter ID:EPDNEW_M6706
Type:initiation region
Name:Acox3_1
Description:Mus musculus acyl-Coenzyme A oxidase 3, pristanoyl , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38535,583,065 - 35,583,125EPDNEW
RGD ID:6836985
Promoter ID:MM_KWN:42013
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000068563,   ENSMUST00000114235,   ENSMUST00000114238,   OTTMUST00000057518,   OTTMUST00000057519,   OTTMUST00000057523,   OTTMUST00000057525,   UC008XDY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36535,925,381 - 35,925,937 (+)MPROMDB
RGD ID:6836984
Promoter ID:MM_KWN:42015
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:OTTMUST00000057524
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36535,948,666 - 35,949,722 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933156 AgrOrtholog
Ensembl Genes ENSMUSG00000029098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000063412 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000067178 ENTREZGENE
  ENSMUSP00000067178.6 UniProtKB/TrEMBL
  ENSMUSP00000109875 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109876.3 UniProtKB/TrEMBL
  ENSMUSP00000119216.2 UniProtKB/TrEMBL
  ENSMUSP00000144499 ENTREZGENE
  ENSMUSP00000144499.2 UniProtKB/TrEMBL
  ENSMUSP00000144658.3 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000068563 ENTREZGENE
  ENSMUST00000068563.12 UniProtKB/TrEMBL
  ENSMUST00000068947 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000114237 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000114238.5 UniProtKB/TrEMBL
  ENSMUST00000156125.8 UniProtKB/TrEMBL
  ENSMUST00000201106.3 UniProtKB/TrEMBL
  ENSMUST00000202266 ENTREZGENE
  ENSMUST00000202266.4 UniProtKB/TrEMBL
Gene3D-CATH 2.40.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ACO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_oxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_oxidase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:80911 UniProtKB/Swiss-Prot
MGD MGI:1933156 ENTREZGENE
NCBI Gene 80911 ENTREZGENE
PANTHER PTHR10909 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ACOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_dh_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acox3 PhenoGen
PIRSF Acyl-CoA_oxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56645 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YVH1_MOUSE UniProtKB/TrEMBL
  ACOX3_MOUSE UniProtKB/Swiss-Prot
  D3Z2N6_MOUSE UniProtKB/TrEMBL
  E9Q296_MOUSE UniProtKB/TrEMBL
  Q3TAW3 ENTREZGENE, UniProtKB/TrEMBL
  Q80UQ0 ENTREZGENE
  Q8C178 ENTREZGENE, UniProtKB/TrEMBL
  Q9EPL9 ENTREZGENE
UniProt Secondary Q7TPP6 UniProtKB/Swiss-Prot
  Q80UQ0 UniProtKB/Swiss-Prot