Trim9 (tripartite motif-containing 9) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Trim9 (tripartite motif-containing 9) Mus musculus
Analyze
Symbol: Trim9
Name: tripartite motif-containing 9
RGD ID: 736869
MGI Page MGI
Description: Predicted to have several functions, including SNARE binding activity; protein homodimerization activity; and ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process; regulation of vesicle-mediated transport; and synaptic vesicle exocytosis. Localizes to cytoplasm and dendrite. Is expressed in several structures, including alimentary system; limb; nervous system; sensory organ; and urinary system. Orthologous to human TRIM9 (tripartite motif containing 9); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI835002; C030048G07Rik; E3 ubiquitin-protein ligase TRIM9; mKIAA0282; RING-type E3 ubiquitin transferase TRIM9; tripartite motif protein 9; tripartite motif-containing protein 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391270,291,307 - 70,394,531 (-)NCBIGRCm39mm39
GRCm39 Ensembl1270,291,307 - 70,394,388 (-)Ensembl
GRCm381270,244,533 - 70,347,869 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1270,244,533 - 70,347,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv371271,345,520 - 71,448,601 (-)NCBIGRCm37mm9NCBIm37
MGSCv361271,166,338 - 71,265,932 (-)NCBImm8
Celera1271,344,221 - 71,453,621 (-)NCBICelera
Cytogenetic Map12C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11960705   PMID:12477932   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17953485  
PMID:19554387   PMID:20085810   PMID:21267068   PMID:22337885   PMID:22988430   PMID:24778312   PMID:25921334   PMID:26702829   PMID:27147649   PMID:27889896   PMID:28701345   PMID:29911180  
PMID:30208054   PMID:30703767   PMID:30970257   PMID:30995482   PMID:32325033  


Genomics

Comparative Map Data
Trim9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391270,291,307 - 70,394,531 (-)NCBIGRCm39mm39
GRCm39 Ensembl1270,291,307 - 70,394,388 (-)Ensembl
GRCm381270,244,533 - 70,347,869 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1270,244,533 - 70,347,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv371271,345,520 - 71,448,601 (-)NCBIGRCm37mm9NCBIm37
MGSCv361271,166,338 - 71,265,932 (-)NCBImm8
Celera1271,344,221 - 71,453,621 (-)NCBICelera
Cytogenetic Map12C2NCBI
TRIM9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1450,975,262 - 51,096,061 (-)EnsemblGRCh38hg38GRCh38
GRCh381450,975,261 - 51,105,173 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371451,441,984 - 51,561,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361450,511,729 - 50,631,797 (-)NCBINCBI36hg18NCBI36
Build 341450,532,535 - 50,631,797NCBI
Celera1431,309,019 - 31,429,455 (-)NCBI
Cytogenetic Map14q22.1NCBI
HuRef1431,567,844 - 31,722,219 (-)NCBIHuRef
CHM1_11451,380,454 - 51,500,911 (-)NCBICHM1_1
Trim9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2688,756,824 - 88,856,588 (-)NCBI
Rnor_6.0 Ensembl692,660,505 - 92,760,018 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0692,660,026 - 92,760,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06102,107,774 - 102,207,427 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4692,358,509 - 92,457,863 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1692,361,964 - 92,461,319 (-)NCBI
Celera687,245,397 - 87,344,755 (-)NCBICelera
Cytogenetic Map6q24NCBI
Trim9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540911,837,273 - 11,946,718 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540911,837,717 - 11,946,718 (+)NCBIChiLan1.0ChiLan1.0
TRIM9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11449,863,424 - 50,129,520 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1449,863,433 - 49,986,212 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01431,577,859 - 31,844,298 (-)NCBIMhudiblu_PPA_v0panPan3
TRIM9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1827,334,045 - 27,441,238 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl827,336,063 - 27,441,445 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha827,087,302 - 27,194,539 (-)NCBI
ROS_Cfam_1.0827,513,068 - 27,620,345 (-)NCBI
UMICH_Zoey_3.1827,167,965 - 27,275,165 (-)NCBI
UNSW_CanFamBas_1.0827,241,144 - 27,349,401 (-)NCBI
UU_Cfam_GSD_1.0827,588,063 - 27,696,386 (-)NCBI
Trim9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864059,525,669 - 59,628,862 (-)NCBI
SpeTri2.0NW_00493649514,561,765 - 14,666,043 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1180,723,287 - 180,830,243 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11180,723,281 - 180,830,555 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21201,010,831 - 201,116,480 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12428,060,365 - 28,202,708 (-)NCBI
ChlSab1.1 Ensembl2428,068,601 - 28,185,269 (-)Ensembl
Vero_WHO_p1.0NW_02366605316,351,692 - 16,656,165 (-)NCBI
Trim9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473117,851,106 - 17,969,461 (+)NCBI

Position Markers
17.MMHAP9FRF8.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381270,257,838 - 70,258,008UniSTSGRCm38
MGSCv371271,358,825 - 71,358,995UniSTSGRCm37
Celera1271,357,564 - 71,357,734UniSTS
Cytogenetic Map12C3UniSTS
Whitehead_YAC12 UniSTS
Trim9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12C3UniSTS
cM Map12 UniSTS
AI835002  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381270,244,798 - 70,244,946UniSTSGRCm38
MGSCv371271,345,785 - 71,345,933UniSTSGRCm37
Celera1271,344,486 - 71,344,634UniSTS
Cytogenetic Map12C3UniSTS
Whitehead/MRC_RH12643.39UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12536844076984429Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12950000084100000Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121161000097210000Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121529102578993590Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121754644680910109Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124164639290920752Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125279985286800022Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125308522887085371Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125464912582619165Mouse
4140993Tglq2b_mtriglyceride QTL 2b (mouse)Not determined125529146189291675Mouse
9850127Tglq6_mtriglyceride QTL6 (mouse)Not determined125529146189291675Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125910000093900000Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126060000092700000Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126115865395158653Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126199339095993590Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126210000099500000Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126226147896261478Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126390993497910109Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126464230998642455Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126464230998642455Mouse
14746976Manh73_mmandible shape 73 (mouse)126581035799810357Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126830000098800000Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2567
Count of miRNA genes:732
Interacting mature miRNAs:956
Transcripts:ENSMUST00000110520, ENSMUST00000110522, ENSMUST00000167755
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_381560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF220039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI835002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000110520   ⟹   ENSMUSP00000106149
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,244,542 - 70,347,332 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110522   ⟹   ENSMUSP00000106151
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,244,533 - 70,347,350 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167755   ⟹   ENSMUSP00000127081
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,263,732 - 70,347,330 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220557
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,292,333 - 70,316,255 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221041   ⟹   ENSMUSP00000152496
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,265,285 - 70,347,350 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221294   ⟹   ENSMUSP00000152691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,247,735 - 70,347,089 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221306
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,266,150 - 70,268,048 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221370   ⟹   ENSMUSP00000152692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,266,149 - 70,347,614 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222316   ⟹   ENSMUSP00000152147
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,247,733 - 70,347,327 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222603   ⟹   ENSMUSP00000159335
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,266,147 - 70,347,350 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223160   ⟹   ENSMUSP00000152887
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,245,106 - 70,347,326 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223518
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1270,252,321 - 70,257,127 (-)Ensembl
RefSeq Acc Id: NM_001110202   ⟹   NP_001103672
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,388 (-)NCBI
GRCm381270,244,533 - 70,347,614 (-)NCBI
MGSCv371271,345,520 - 71,448,601 (-)RGD
Celera1271,344,221 - 71,453,621 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110203   ⟹   NP_001103673
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,310,506 - 70,394,388 (-)NCBI
GRCm381270,263,732 - 70,347,614 (-)NCBI
MGSCv371271,345,520 - 71,448,601 (-)RGD
Celera1271,344,221 - 71,453,621 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286386   ⟹   NP_001273315
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,310,506 - 70,394,388 (-)NCBI
GRCm381270,263,732 - 70,347,614 (-)NCBI
Celera1271,344,221 - 71,453,621 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286387   ⟹   NP_001273316
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,388 (-)NCBI
GRCm381270,244,533 - 70,347,614 (-)NCBI
Celera1271,344,221 - 71,453,621 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286388   ⟹   NP_001273317
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,388 (-)NCBI
GRCm381270,244,533 - 70,347,614 (-)NCBI
Celera1271,344,221 - 71,453,621 (-)NCBI
Sequence:
RefSeq Acc Id: NM_053167   ⟹   NP_444397
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,388 (-)NCBI
GRCm381270,244,533 - 70,347,614 (-)NCBI
MGSCv371271,345,520 - 71,448,601 (-)RGD
Celera1271,344,221 - 71,453,621 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516400   ⟹   XP_006516463
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516401   ⟹   XP_006516464
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516402   ⟹   XP_006516465
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516403   ⟹   XP_006516466
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516404   ⟹   XP_006516467
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516405   ⟹   XP_006516468
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,483 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516406   ⟹   XP_006516469
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,305,724 - 70,394,404 (-)NCBI
GRCm381270,266,147 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516407   ⟹   XP_006516470
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,305,724 - 70,394,531 (-)NCBI
GRCm381270,266,147 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315263   ⟹   XP_017170752
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315265   ⟹   XP_017170754
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247006   ⟹   XP_030102866
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247007   ⟹   XP_030102867
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247008   ⟹   XP_030102868
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247009   ⟹   XP_030102869
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,527 (-)NCBI
GRCm381270,244,533 - 70,347,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157692   ⟹   XP_036013585
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
RefSeq Acc Id: XM_036157693   ⟹   XP_036013586
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
RefSeq Acc Id: XM_036157695   ⟹   XP_036013588
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,394,404 (-)NCBI
RefSeq Acc Id: XM_036157696   ⟹   XP_036013589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,393,068 (-)NCBI
RefSeq Acc Id: XM_036157697   ⟹   XP_036013590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,305,724 - 70,394,404 (-)NCBI
RefSeq Acc Id: XM_036157698   ⟹   XP_036013591
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,305,724 - 70,394,404 (-)NCBI
RefSeq Acc Id: XM_036157699   ⟹   XP_036013592
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,342,598 (-)NCBI
RefSeq Acc Id: XM_036157701   ⟹   XP_036013594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,393,059 (-)NCBI
RefSeq Acc Id: XM_036157702   ⟹   XP_036013595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,393,060 (-)NCBI
RefSeq Acc Id: XM_036157703   ⟹   XP_036013596
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,291,307 - 70,340,057 (-)NCBI
RefSeq Acc Id: XR_381560
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391270,305,724 - 70,394,404 (-)NCBI
GRCm381270,266,147 - 70,347,869 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001103672 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103673 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273315 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273316 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273317 (Get FASTA)   NCBI Sequence Viewer  
  NP_444397 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516463 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516464 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516465 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516466 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516467 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516468 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516469 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516470 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170752 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170754 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102866 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102867 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102868 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102869 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013585 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013586 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013588 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013589 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013590 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013591 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013592 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013594 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013595 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013596 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG53493 (Get FASTA)   NCBI Sequence Viewer  
  AAH52034 (Get FASTA)   NCBI Sequence Viewer  
  BAC25854 (Get FASTA)   NCBI Sequence Viewer  
  BAC33074 (Get FASTA)   NCBI Sequence Viewer  
  BAC33479 (Get FASTA)   NCBI Sequence Viewer  
  BAC33982 (Get FASTA)   NCBI Sequence Viewer  
  BAC97919 (Get FASTA)   NCBI Sequence Viewer  
  BAE23150 (Get FASTA)   NCBI Sequence Viewer  
  BAE37203 (Get FASTA)   NCBI Sequence Viewer  
  EDL36577 (Get FASTA)   NCBI Sequence Viewer  
  EDL36578 (Get FASTA)   NCBI Sequence Viewer  
  EDL36579 (Get FASTA)   NCBI Sequence Viewer  
  EDL36580 (Get FASTA)   NCBI Sequence Viewer  
  EDL36581 (Get FASTA)   NCBI Sequence Viewer  
  EDL36582 (Get FASTA)   NCBI Sequence Viewer  
  Q8C7M3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_444397   ⟸   NM_053167
- Peptide Label: isoform a
- UniProtKB: Q8C7M3 (UniProtKB/Swiss-Prot),   E9QLH4 (UniProtKB/TrEMBL),   Q3TR28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103672   ⟸   NM_001110202
- Peptide Label: isoform b
- UniProtKB: Q8C7M3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001103673   ⟸   NM_001110203
- Peptide Label: isoform c
- UniProtKB: Q8C7M3 (UniProtKB/Swiss-Prot),   E9Q524 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273316   ⟸   NM_001286387
- Peptide Label: isoform e
- UniProtKB: Q8C7M3 (UniProtKB/Swiss-Prot),   Q3TR28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273317   ⟸   NM_001286388
- Peptide Label: isoform f
- UniProtKB: Q8C7M3 (UniProtKB/Swiss-Prot),   Q3TR28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273315   ⟸   NM_001286386
- Peptide Label: isoform d
- UniProtKB: Q8C7M3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516467   ⟸   XM_006516404
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006516466   ⟸   XM_006516403
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006516464   ⟸   XM_006516401
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006516465   ⟸   XM_006516402
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006516463   ⟸   XM_006516400
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006516468   ⟸   XM_006516405
- Peptide Label: isoform X12
- UniProtKB: A0A1Y7VP88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516470   ⟸   XM_006516407
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006516469   ⟸   XM_006516406
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017170754   ⟸   XM_017315265
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017170752   ⟸   XM_017315263
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030102869   ⟸   XM_030247009
- Peptide Label: isoform X15
RefSeq Acc Id: XP_030102868   ⟸   XM_030247008
- Peptide Label: isoform X13
RefSeq Acc Id: XP_030102866   ⟸   XM_030247006
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030102867   ⟸   XM_030247007
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000152887   ⟸   ENSMUST00000223160
RefSeq Acc Id: ENSMUSP00000152147   ⟸   ENSMUST00000222316
RefSeq Acc Id: ENSMUSP00000159335   ⟸   ENSMUST00000222603
RefSeq Acc Id: ENSMUSP00000106149   ⟸   ENSMUST00000110520
RefSeq Acc Id: ENSMUSP00000106151   ⟸   ENSMUST00000110522
RefSeq Acc Id: ENSMUSP00000127081   ⟸   ENSMUST00000167755
RefSeq Acc Id: ENSMUSP00000152496   ⟸   ENSMUST00000221041
RefSeq Acc Id: ENSMUSP00000152692   ⟸   ENSMUST00000221370
RefSeq Acc Id: ENSMUSP00000152691   ⟸   ENSMUST00000221294
RefSeq Acc Id: XP_036013588   ⟸   XM_036157695
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036013586   ⟸   XM_036157693
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036013585   ⟸   XM_036157692
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036013589   ⟸   XM_036157696
- Peptide Label: isoform X17
RefSeq Acc Id: XP_036013595   ⟸   XM_036157702
- Peptide Label: isoform X22
RefSeq Acc Id: XP_036013594   ⟸   XM_036157701
- Peptide Label: isoform X21
RefSeq Acc Id: XP_036013592   ⟸   XM_036157699
- Peptide Label: isoform X20
RefSeq Acc Id: XP_036013596   ⟸   XM_036157703
- Peptide Label: isoform X23
RefSeq Acc Id: XP_036013591   ⟸   XM_036157698
- Peptide Label: isoform X18
RefSeq Acc Id: XP_036013590   ⟸   XM_036157697
- Peptide Label: isoform X18
Promoters
RGD ID:8678448
Promoter ID:EPDNEW_M17255
Type:initiation region
Name:Trim9_1
Description:Mus musculus tripartite motif-containing 9 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381270,347,332 - 70,347,392EPDNEW
RGD ID:6823487
Promoter ID:MM_KWN:11846
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:ENSMUST00000081485,   NM_001110202,   NM_001110203,   NM_053167,   UC007NTP.1,   UC007NTQ.1,   UC007NTR.1,   UC007NTS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361271,448,111 - 71,448,611 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137354 AgrOrtholog
Ensembl Genes ENSMUSG00000021071 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000106149 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000106151 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000127081 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000152147 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000152496 UniProtKB/Swiss-Prot
  ENSMUSP00000152691 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000152692 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000152887 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000159335 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000110520 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000110522 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000167755 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000221041 UniProtKB/Swiss-Prot
  ENSMUST00000221294 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000221370 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000222316 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000222603 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000223160 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bbox_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COS_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:94090 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2137354 ENTREZGENE
NCBI Gene 94090 ENTREZGENE
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim9 PhenoGen
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BBC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VJX8_MOUSE UniProtKB/TrEMBL
  A0A1Y7VP88 ENTREZGENE, UniProtKB/TrEMBL
  A0A6I8MWZ7_MOUSE UniProtKB/TrEMBL
  E9Q524 ENTREZGENE, UniProtKB/TrEMBL
  E9QLH4 ENTREZGENE, UniProtKB/TrEMBL
  Q3TR28 ENTREZGENE, UniProtKB/TrEMBL
  Q3UVW9_MOUSE UniProtKB/TrEMBL
  Q8C7M3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6ZQE5 UniProtKB/Swiss-Prot
  Q80WT6 UniProtKB/Swiss-Prot
  Q8C7Z4 UniProtKB/Swiss-Prot
  Q8CC32 UniProtKB/Swiss-Prot
  Q8CEG2 UniProtKB/Swiss-Prot
  Q99PQ3 UniProtKB/Swiss-Prot