Vti1a (vesicle transport through interaction with t-SNAREs 1A) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Vti1a (vesicle transport through interaction with t-SNAREs 1A) Mus musculus
Analyze
Symbol: Vti1a
Name: vesicle transport through interaction with t-SNAREs 1A
RGD ID: 736864
MGI Page MGI
Description: Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; endosomal transport; and voluntary musculoskeletal movement. Predicted to be located in several cellular components, including autophagosome; cytoplasmic vesicle; and neuronal cell body. Predicted to be part of SNARE complex. Predicted to be active in several cellular components, including Golgi apparatus; cytoplasmic vesicle membrane; and hippocampal mossy fiber to CA3 synapse. Is expressed in several structures, including adipose tissue; alimentary system; genitourinary system; hemolymphoid system; and nervous system. Orthologous to human VTI1A (vesicle transport through interaction with t-SNAREs 1A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110014F16Rik; 1110018K19Rik; 4921537J05Rik; MGC102006; MVti1; MVti1a; vesicle transport through interaction with t-SNAREs 1 homolog; vesicle transport through interaction with t-SNAREs homolog 1A; vesicle transport v-SNARE protein Vti1-like 2; Vti1; Vti1-rp2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,304,489 - 55,615,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,304,727 - 55,615,741 (+)EnsemblGRCm39 Ensembl
GRCm381955,316,030 - 55,627,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,316,295 - 55,627,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,390,841 - 55,701,051 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,369,601 - 55,679,811 (+)NCBIMGSCv36mm8
Celera1957,507,484 - 57,817,205 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal auditory brainstem response  (IEA)
abnormal axon extension  (IAGP)
abnormal axon guidance  (IAGP)
abnormal behavior  (IEA)
abnormal brain commissure morphology  (IAGP)
abnormal cranial ganglia morphology  (IAGP)
abnormal epididymis morphology  (IEA)
abnormal innervation  (IAGP)
abnormal nervous system development  (IAGP)
abnormal optic tract morphology  (IAGP)
abnormal sensory ganglion morphology  (IAGP)
abnormal striatum morphology  (IAGP)
abnormal superior cervical ganglion morphology  (IAGP)
abnormal testis morphology  (IEA)
absent anterior commissure  (IAGP)
absent hippocampal commissure  (IAGP)
decreased body length  (IEA)
decreased brain size  (IAGP)
decreased corpus callosum size  (IAGP)
decreased fasting circulating glucose level  (IEA)
decreased optic chiasm size  (IAGP)
decreased thigmotaxis  (IEA)
dorsal root ganglion degeneration  (IAGP)
enlarged brain ventricles  (IAGP)
enlarged epididymis  (IEA)
enlarged lateral ventricles  (IAGP)
hyperactivity  (IEA)
increased circulating alkaline phosphatase level  (IEA)
increased neuron apoptosis  (IAGP)
increased vertical activity  (IEA)
limb grasping  (IEA)
neurodegeneration  (IAGP)
no abnormal phenotype detected  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
small geniculate ganglion  (IAGP)
small nodose ganglion  (IAGP)
small petrosal ganglion  (IAGP)
small trigeminal ganglion  (IAGP)
vestibular ganglion degeneration  (IAGP)
vestibular ganglion hypoplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Seven novel mammalian SNARE proteins localize to distinct membrane compartments. Advani RJ, etal., J Biol Chem 1998 Apr 24;273(17):10317-24.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9398683   PMID:9446565   PMID:9705316   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15640147  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:17060155   PMID:18799693   PMID:19620288   PMID:21262811   PMID:21873635   PMID:22646850   PMID:24194600   PMID:24902738   PMID:27626380  
PMID:30143604   PMID:31160536   PMID:31235642   PMID:32325033   PMID:33774122   PMID:36419086   PMID:38355793  


Genomics

Comparative Map Data
Vti1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,304,489 - 55,615,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,304,727 - 55,615,741 (+)EnsemblGRCm39 Ensembl
GRCm381955,316,030 - 55,627,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,316,295 - 55,627,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,390,841 - 55,701,051 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,369,601 - 55,679,811 (+)NCBIMGSCv36mm8
Celera1957,507,484 - 57,817,205 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.35NCBI
VTI1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810112,446,988 - 112,855,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10112,446,998 - 112,818,744 (+)EnsemblGRCh38hg38GRCh38
GRCh3710114,206,746 - 114,615,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610114,196,746 - 114,568,493 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410114,197,005 - 114,487,522NCBI
Celera10107,934,279 - 108,306,193 (+)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10107,834,405 - 108,205,925 (+)NCBIHuRef
CHM1_110114,488,406 - 114,860,295 (+)NCBICHM1_1
T2T-CHM13v2.010113,337,655 - 113,746,195 (+)NCBIT2T-CHM13v2.0
Vti1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81264,361,538 - 264,667,171 (+)NCBIGRCr8
mRatBN7.21254,356,343 - 254,661,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1254,356,429 - 254,661,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1262,561,531 - 262,865,459 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01269,267,611 - 269,571,543 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01261,915,213 - 262,220,349 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01276,310,072 - 276,508,635 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1276,309,927 - 276,490,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01283,705,427 - 283,902,980 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,664,003 - 261,905,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11261,875,047 - 262,116,789 (+)NCBI
Celera1250,063,252 - 250,364,895 (+)NCBICelera
Cytogenetic Map1q55NCBI
Vti1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,542,979 - 17,919,191 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,542,605 - 17,910,809 (+)NCBIChiLan1.0ChiLan1.0
VTI1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,322,328 - 124,825,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,327,795 - 124,831,021 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010109,037,834 - 109,539,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,476,478 - 112,857,949 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,476,859 - 112,845,615 (+)Ensemblpanpan1.1panPan2
VTI1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12823,496,553 - 23,854,609 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2823,496,593 - 23,842,369 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2823,648,320 - 24,006,512 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02824,029,018 - 24,386,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2824,029,040 - 24,375,059 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12823,586,067 - 23,944,129 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02823,597,236 - 23,951,876 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02823,793,699 - 24,150,727 (+)NCBIUU_Cfam_GSD_1.0
Vti1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,089,354 - 22,551,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364863,010,490 - 3,347,424 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364863,010,169 - 3,353,512 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VTI1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14122,849,004 - 123,215,938 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114122,848,727 - 123,217,568 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214133,772,147 - 133,859,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VTI1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,330,089 - 105,828,029 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,330,143 - 105,695,049 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,533,145 - 67,038,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vti1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473733,664,093 - 34,020,863 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473733,601,794 - 34,020,779 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vti1a
11021 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:950
Count of miRNA genes:557
Interacting mature miRNAs:656
Transcripts:ENSMUST00000095950
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
11528548Sluc35_msusceptibility to lung cancer 35 (mouse)195537605059123872Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
11667075Led3_mlate embryonic death 3 (mouse)195108837859123872Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
1300585Pgia12_mproteoglycan induced arthritis 12 (mouse)Not determined194258685961420004Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse

Markers in Region
D19Mit104  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,443,095 - 55,443,200UniSTSGRCm38
MGSCv371955,517,585 - 55,517,690UniSTSGRCm37
Cytogenetic Map19D2UniSTS
cM Map1953.0UniSTS
Whitehead Genetic1944.8UniSTS
Whitehead/MRC_RH19590.55UniSTS
Whitehead_YAC19 UniSTS
D19Mit35  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,387,618 - 55,387,735UniSTSGRCm38
MGSCv371955,462,108 - 55,462,225UniSTSGRCm37
Celera1957,579,141 - 57,579,258UniSTS
Cytogenetic Map19D2UniSTS
cM Map1953.0UniSTS
Whitehead Genetic1944.8UniSTS
Whitehead/MRC_RH19588.53UniSTS
Whitehead_YAC19 UniSTS
UniSTS:237977  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,521,087 - 55,521,192UniSTSGRCm38
MGSCv371955,595,577 - 55,595,682UniSTSGRCm37
Celera1957,711,465 - 57,711,570UniSTS
Cytogenetic Map19D2UniSTS
px-12c5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,508,309 - 55,508,473UniSTSGRCm38
MGSCv371955,582,799 - 55,582,963UniSTSGRCm37
Celera1957,699,330 - 57,699,494UniSTS
Cytogenetic Map19D2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001293685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB767664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO430297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000095950   ⟹   ENSMUSP00000093644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,304,783 - 55,614,993 (+)Ensembl
GRCm38.p6 Ensembl1955,316,351 - 55,626,561 (+)Ensembl
Ensembl Acc Id: ENSMUST00000223690   ⟹   ENSMUSP00000153629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,304,782 - 55,615,741 (+)Ensembl
GRCm38.p6 Ensembl1955,316,350 - 55,627,309 (+)Ensembl
Ensembl Acc Id: ENSMUST00000224396
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,369,446 - 55,435,411 (+)Ensembl
GRCm38.p6 Ensembl1955,381,014 - 55,446,979 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,304,789 - 55,321,070 (+)Ensembl
GRCm38.p6 Ensembl1955,316,357 - 55,332,638 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,304,765 - 55,372,361 (+)Ensembl
GRCm38.p6 Ensembl1955,316,333 - 55,383,929 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225529   ⟹   ENSMUSP00000153392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,304,727 - 55,565,433 (+)Ensembl
GRCm38.p6 Ensembl1955,316,295 - 55,577,001 (+)Ensembl
Ensembl Acc Id: ENSMUST00000226069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,304,759 - 55,355,935 (+)Ensembl
GRCm38.p6 Ensembl1955,316,327 - 55,367,503 (+)Ensembl
RefSeq Acc Id: NM_001293685   ⟹   NP_001280614
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,489 - 55,615,893 (+)NCBI
GRCm381955,316,057 - 55,627,461 (+)NCBI
Celera1957,507,190 - 57,818,107 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001293686   ⟹   NP_001280615
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,489 - 55,615,893 (+)NCBI
GRCm381955,316,057 - 55,627,461 (+)NCBI
Celera1957,507,190 - 57,818,107 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360431   ⟹   NP_001347360
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,489 - 55,615,893 (+)NCBI
GRCm381955,316,057 - 55,627,461 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360432   ⟹   NP_001347361
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,489 - 55,565,431 (+)NCBI
GRCm381955,316,057 - 55,576,999 (+)NCBI
Sequence:
RefSeq Acc Id: NM_016862   ⟹   NP_058558
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,489 - 55,615,893 (+)NCBI
GRCm381955,316,057 - 55,627,461 (+)NCBI
MGSCv371955,390,841 - 55,701,051 (+)RGD
Celera1957,507,190 - 57,818,107 (+)NCBI
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527184   ⟹   XP_006527247
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,509,691 (+)NCBI
GRCm381955,316,030 - 55,502,670 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527185   ⟹   XP_006527248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,491,215 (+)NCBI
GRCm381955,316,030 - 55,502,667 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527188   ⟹   XP_006527251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,570,113 (+)NCBI
GRCm381955,316,030 - 55,581,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527191   ⟹   XP_006527254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,570,113 (+)NCBI
GRCm381955,316,030 - 55,581,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527192   ⟹   XP_006527255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,571,656 (+)NCBI
GRCm381955,316,030 - 55,583,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527196   ⟹   XP_006527259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,396,541 (+)NCBI
GRCm381955,316,030 - 55,408,109 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527198   ⟹   XP_006527261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,436,828 (+)NCBI
GRCm381955,316,030 - 55,446,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318251   ⟹   XP_017173740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,578,888 (+)NCBI
GRCm381955,316,030 - 55,590,779 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250990   ⟹   XP_030106850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,577,587 (+)NCBI
GRCm381955,316,030 - 55,590,778 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161630   ⟹   XP_036017523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,564,823 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161631   ⟹   XP_036017524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,564,810 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161633   ⟹   XP_036017526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,565,421 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161634   ⟹   XP_036017527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,559 - 55,436,828 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161635   ⟹   XP_036017528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,497 - 55,436,828 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161636   ⟹   XP_036017529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,304,497 - 55,396,541 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001280614 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280615 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347360 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347361 (Get FASTA)   NCBI Sequence Viewer  
  NP_058558 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527247 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527248 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527251 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527254 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527255 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527259 (Get FASTA)   NCBI Sequence Viewer  
  XP_006527261 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173740 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106850 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017523 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017524 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017526 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017527 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017528 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017529 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC23482 (Get FASTA)   NCBI Sequence Viewer  
  AAC32049 (Get FASTA)   NCBI Sequence Viewer  
  AAH19386 (Get FASTA)   NCBI Sequence Viewer  
  AAH89321 (Get FASTA)   NCBI Sequence Viewer  
  BAB23532 (Get FASTA)   NCBI Sequence Viewer  
  BAC25442 (Get FASTA)   NCBI Sequence Viewer  
  BAC25456 (Get FASTA)   NCBI Sequence Viewer  
  BAC26046 (Get FASTA)   NCBI Sequence Viewer  
  BAC29232 (Get FASTA)   NCBI Sequence Viewer  
  EDL01730 (Get FASTA)   NCBI Sequence Viewer  
  EDL01731 (Get FASTA)   NCBI Sequence Viewer  
  EDL01732 (Get FASTA)   NCBI Sequence Viewer  
  EDL01733 (Get FASTA)   NCBI Sequence Viewer  
  EDL01734 (Get FASTA)   NCBI Sequence Viewer  
  EDL01735 (Get FASTA)   NCBI Sequence Viewer  
  EDL01736 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000093644
  ENSMUSP00000093644.3
  ENSMUSP00000153392
  ENSMUSP00000153392.2
  ENSMUSP00000153629
  ENSMUSP00000153629.2
GenBank Protein O89116 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058558   ⟸   NM_016862
- Peptide Label: isoform 2
- UniProtKB: Q545P9 (UniProtKB/Swiss-Prot),   O89116 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006527255   ⟸   XM_006527192
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006527254   ⟸   XM_006527191
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006527251   ⟸   XM_006527188
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006527247   ⟸   XM_006527184
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006527248   ⟸   XM_006527185
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006527261   ⟸   XM_006527198
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006527259   ⟸   XM_006527196
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: NP_001280614   ⟸   NM_001293685
- Peptide Label: isoform 1
- UniProtKB: Q5FWJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280615   ⟸   NM_001293686
- Peptide Label: isoform 3
- UniProtKB: O89116 (UniProtKB/Swiss-Prot),   Q5FWJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173740   ⟸   XM_017318251
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030106850   ⟸   XM_030250990
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001347360   ⟸   NM_001360431
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001347361   ⟸   NM_001360432
- Peptide Label: isoform 5
- UniProtKB: A0A286YDF2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000153629   ⟸   ENSMUST00000223690
Ensembl Acc Id: ENSMUSP00000153392   ⟸   ENSMUST00000225529
Ensembl Acc Id: ENSMUSP00000093644   ⟸   ENSMUST00000095950
RefSeq Acc Id: XP_036017528   ⟸   XM_036161635
- Peptide Label: isoform X12
RefSeq Acc Id: XP_036017529   ⟸   XM_036161636
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036017526   ⟸   XM_036161633
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036017523   ⟸   XM_036161630
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036017524   ⟸   XM_036161631
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036017527   ⟸   XM_036161634
- Peptide Label: isoform X11
Protein Domains
t-SNARE coiled-coil homology   Vesicle transport v-SNARE N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O89116-F1-model_v2 AlphaFold O89116 1-217 view protein structure

Promoters
RGD ID:13679816
Promoter ID:EPDNEW_M24057
Type:initiation region
Name:Vti1a_2
Description:Mus musculus vesicle transport through interaction with t-SNAREs1A , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24058  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381955,316,031 - 55,316,091EPDNEW
RGD ID:13679820
Promoter ID:EPDNEW_M24058
Type:initiation region
Name:Vti1a_1
Description:Mus musculus vesicle transport through interaction with t-SNAREs1A , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24057  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381955,316,327 - 55,316,387EPDNEW
RGD ID:6830528
Promoter ID:MM_KWN:27376
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000111671,   ENSMUST00000111679,   ENSMUST00000111680,   ENSMUST00000111682,   ENSMUST00000111683,   NM_001033573,   NM_016862,   UC008HXQ.1,   UC008HXR.1,   UC008HXU.1,   UC008HXV.1,   UC008HXW.1,   UC008HXY.1,   UC008HXZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361955,390,436 - 55,390,936 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1855699 AgrOrtholog
Ensembl Genes ENSMUSG00000024983 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000095950 ENTREZGENE
  ENSMUST00000095950.3 UniProtKB/Swiss-Prot
  ENSMUST00000223690 ENTREZGENE
  ENSMUST00000223690.2 UniProtKB/TrEMBL
  ENSMUST00000225529 ENTREZGENE
  ENSMUST00000225529.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.400 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GOSR2/Membrin/Bos1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  v-SNARE_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vesicle_trsprt_v-SNARE_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53611 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1855699 ENTREZGENE
NCBI Gene 53611 ENTREZGENE
PANTHER VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG 1A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-SNARE_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vti1a PhenoGen
PIRSF Membrin-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47661 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YDF2 ENTREZGENE, UniProtKB/TrEMBL
  O89116 ENTREZGENE
  Q545P9 ENTREZGENE
  Q5FWJ7 ENTREZGENE, UniProtKB/TrEMBL
  Q8CES8_MOUSE UniProtKB/TrEMBL
  Q8CET6_MOUSE UniProtKB/TrEMBL
  VTI1A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q545P9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-08 Vti1a  vesicle transport through interaction with t-SNAREs 1A    vesicle transport through interaction with t-SNAREs homolog 1A (yeast)  Symbol and/or name change 5135510 APPROVED