Atp2c1 (ATPase, Ca++-sequestering) - Rat Genome Database

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Gene: Atp2c1 (ATPase, Ca++-sequestering) Mus musculus
Analyze
Symbol: Atp2c1
Name: ATPase, Ca++-sequestering
RGD ID: 736851
MGI Page MGI
Description: Predicted to enable ATP binding activity; ATPase-coupled cation transmembrane transporter activity; and metal ion binding activity. Involved in Golgi calcium ion homeostasis and positive regulation of Golgi to plasma membrane protein transport. Located in Golgi cisterna membrane and cis-Golgi network membrane. Is expressed in several structures, including gut; heart; liver; lung; and mammary gland. Human ortholog(s) of this gene implicated in Hailey-Hailey disease. Orthologous to human ATP2C1 (ATPase secretory pathway Ca2+ transporting 1); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1700121J11Rik; ATP-dependent Ca(2+) pump PMR1; ATP2; ATP2C1A; ATPase 2C1; ATPase, Ca++ transporting, type 2C, member 1; AW061228; BCPM; Ca(2+)/Mn(2+)-ATPase 2C1; calcium-transporting ATPase type 2C member 1; D930003G21Rik; HHD; MGC58010; PM; pmr1; S; secretory pathway Ca(2+)-transporting ATPase type 1; SPCA; SPCA1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,288,561 - 105,398,456 (-)NCBIGRCm39mm39
GRCm39 Ensembl9105,280,738 - 105,404,518 (-)Ensembl
GRCm389105,411,362 - 105,521,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,403,539 - 105,527,319 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,313,692 - 105,397,447 (-)NCBIGRCm37mm9NCBIm37
MGSCv369105,269,462 - 105,353,199 (-)NCBImm8
Celera9105,007,157 - 105,064,980 (-)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10951186   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14747290   PMID:15368895   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:17597066   PMID:17967808   PMID:18599310   PMID:18799693   PMID:19726293   PMID:19793975   PMID:20887894   PMID:21267068   PMID:21674634  
PMID:21677750   PMID:21873635   PMID:23840669   PMID:24530912   PMID:30228103   PMID:32325033  


Genomics

Comparative Map Data
Atp2c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,288,561 - 105,398,456 (-)NCBIGRCm39mm39
GRCm39 Ensembl9105,280,738 - 105,404,518 (-)Ensembl
GRCm389105,411,362 - 105,521,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,403,539 - 105,527,319 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,313,692 - 105,397,447 (-)NCBIGRCm37mm9NCBIm37
MGSCv369105,269,462 - 105,353,199 (-)NCBImm8
Celera9105,007,157 - 105,064,980 (-)NCBICelera
Cytogenetic Map9F1NCBI
ATP2C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3130,850,595 - 131,016,712 (+)EnsemblGRCh38hg38GRCh38
GRCh383130,850,595 - 131,016,712 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373130,569,439 - 130,735,556 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,096,124 - 132,218,246 (+)NCBINCBI36hg18NCBI36
Build 343132,096,131 - 132,204,690NCBI
Celera3129,038,713 - 129,160,803 (+)NCBI
Cytogenetic Map3q22.1NCBI
HuRef3127,954,018 - 128,119,693 (+)NCBIHuRef
CHM1_13130,532,422 - 130,699,080 (+)NCBICHM1_1
Atp2c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28106,034,777 - 106,155,854 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8106,034,636 - 106,156,006 (-)Ensembl
Rnor_6.08113,953,959 - 114,039,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,955,647 - 114,013,623 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,341,077 - 113,426,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,516,092 - 110,603,620 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18110,562,294 - 110,623,075 (-)NCBI
Celera8105,376,283 - 105,459,249 (-)NCBICelera
Cytogenetic Map8q32NCBI
Atp2c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555017,383,150 - 7,519,988 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555017,382,657 - 7,519,789 (-)NCBIChiLan1.0ChiLan1.0
ATP2C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13135,301,721 - 135,423,700 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,260,796 - 135,423,700 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03127,937,272 - 128,101,060 (+)NCBIMhudiblu_PPA_v0panPan3
ATP2C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,097,831 - 28,233,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,066,639 - 28,235,215 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2328,071,244 - 28,206,384 (+)NCBI
ROS_Cfam_1.02328,573,616 - 28,742,803 (+)NCBI
UMICH_Zoey_3.12328,270,690 - 28,439,119 (+)NCBI
UNSW_CanFamBas_1.02328,360,695 - 28,495,909 (+)NCBI
UU_Cfam_GSD_1.02328,610,117 - 28,745,760 (+)NCBI
Atp2c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560267,579,716 - 67,714,373 (+)NCBI
SpeTri2.0NW_0049365294,340,131 - 4,474,884 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,438,615 - 1,612,676 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,461,562 - 1,580,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,118,899 - 1,270,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11559,189,075 - 59,348,684 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1559,188,225 - 59,311,709 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604132,207,172 - 32,372,825 (-)NCBIVero_WHO_p1.0
Atp2c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247306,865,197 - 7,001,378 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AW061228  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389105,411,573 - 105,411,662UniSTSGRCm38
MGSCv379105,313,903 - 105,313,992UniSTSGRCm37
Celera9105,007,368 - 105,007,457UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91089.27UniSTS
D9Dcr74  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389105,435,217 - 105,435,312UniSTSGRCm38
MGSCv379105,337,547 - 105,337,642UniSTSGRCm37
Celera9105,030,956 - 105,031,045UniSTS
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS
D9Dcr75  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389105,479,812 - 105,479,924UniSTSGRCm38
MGSCv379105,382,142 - 105,382,254UniSTSGRCm37
Celera9105,074,664 - 105,074,726UniSTS
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS
UniSTS:236240  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389105,411,573 - 105,411,683UniSTSGRCm38
MGSCv379105,313,903 - 105,314,013UniSTSGRCm37
Celera9105,007,368 - 105,007,478UniSTS
Cytogenetic Map9F1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2049
Count of miRNA genes:780
Interacting mature miRNAs:1027
Transcripts:ENSMUST00000038118, ENSMUST00000085133, ENSMUST00000112557, ENSMUST00000112558, ENSMUST00000163879, ENSMUST00000175697, ENSMUST00000176036, ENSMUST00000176190, ENSMUST00000176363, ENSMUST00000176390, ENSMUST00000176651, ENSMUST00000176656, ENSMUST00000176770, ENSMUST00000176787, ENSMUST00000176960, ENSMUST00000177000, ENSMUST00000177074, ENSMUST00000177189, ENSMUST00000177293, ENSMUST00000177334
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001253834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001253836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ551270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU611728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU754887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000038118   ⟹   ENSMUSP00000039103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,288,557 - 105,372,332 (-)Ensembl
GRCm38.p6 Ensembl9105,411,358 - 105,495,133 (-)Ensembl
RefSeq Acc Id: ENSMUST00000085133   ⟹   ENSMUSP00000082220
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,288,562 - 105,398,456 (-)Ensembl
GRCm38.p6 Ensembl9105,411,363 - 105,521,257 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112557
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,290,122 - 105,313,783 (-)Ensembl
GRCm38.p6 Ensembl9105,412,923 - 105,436,584 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112558   ⟹   ENSMUSP00000108177
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,287,637 - 105,372,293 (-)Ensembl
GRCm38.p6 Ensembl9105,410,438 - 105,495,094 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163879   ⟹   ENSMUSP00000129617
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,299,967 - 105,372,276 (-)Ensembl
GRCm38.p6 Ensembl9105,422,768 - 105,495,077 (-)Ensembl
RefSeq Acc Id: ENSMUST00000175697
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,291,926 - 105,295,454 (-)Ensembl
GRCm38.p6 Ensembl9105,414,727 - 105,418,255 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176036   ⟹   ENSMUSP00000135010
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,336,859 - 105,372,682 (-)Ensembl
GRCm38.p6 Ensembl9105,459,660 - 105,495,483 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176190   ⟹   ENSMUSP00000135320
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,330,017 - 105,372,246 (-)Ensembl
GRCm38.p6 Ensembl9105,452,818 - 105,495,047 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176363   ⟹   ENSMUSP00000135170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,330,737 - 105,372,304 (-)Ensembl
GRCm38.p6 Ensembl9105,453,538 - 105,495,105 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176651   ⟹   ENSMUSP00000135732
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,329,024 - 105,347,589 (-)Ensembl
GRCm38.p6 Ensembl9105,451,825 - 105,470,390 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176656
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,297,274 - 105,309,934 (-)Ensembl
GRCm38.p6 Ensembl9105,420,075 - 105,432,735 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176770   ⟹   ENSMUSP00000134764
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,280,738 - 105,398,346 (-)Ensembl
GRCm38.p6 Ensembl9105,403,539 - 105,521,147 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176787
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,346,306 - 105,372,304 (-)Ensembl
GRCm38.p6 Ensembl9105,469,107 - 105,495,105 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176960
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,323,253 - 105,371,661 (-)Ensembl
GRCm38.p6 Ensembl9105,446,054 - 105,494,462 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177000
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,312,380 - 105,320,563 (-)Ensembl
GRCm38.p6 Ensembl9105,435,181 - 105,443,364 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177074   ⟹   ENSMUSP00000135646
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,280,745 - 105,371,619 (-)Ensembl
GRCm38.p6 Ensembl9105,403,546 - 105,494,420 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177189
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,330,681 - 105,372,694 (-)Ensembl
GRCm38.p6 Ensembl9105,453,482 - 105,495,495 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177293   ⟹   ENSMUSP00000135802
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,280,738 - 105,338,229 (-)Ensembl
GRCm38.p6 Ensembl9105,403,539 - 105,461,030 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177334   ⟹   ENSMUSP00000134902
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,341,851 - 105,371,863 (-)Ensembl
GRCm38.p6 Ensembl9105,464,652 - 105,494,664 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186495
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,397,201 - 105,398,613 (-)Ensembl
GRCm38.p6 Ensembl9105,520,002 - 105,521,414 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190802
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9105,336,859 - 105,404,518 (-)Ensembl
GRCm38.p6 Ensembl9105,459,660 - 105,527,319 (-)Ensembl
RefSeq Acc Id: NM_001253831   ⟹   NP_001240760
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399105,288,561 - 105,398,456 (-)NCBI
GRCm389105,411,362 - 105,521,257 (-)ENTREZGENE
Celera9105,007,157 - 105,115,618 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001253834   ⟹   NP_001240763
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399105,288,561 - 105,372,332 (-)NCBI
GRCm389105,411,362 - 105,495,133 (-)NCBI
Celera9105,007,157 - 105,115,618 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001253836   ⟹   NP_001240765
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399105,299,966 - 105,372,332 (-)NCBI
GRCm389105,422,767 - 105,495,133 (-)NCBI
Celera9105,007,157 - 105,115,618 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001359822   ⟹   NP_001346751
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399105,288,561 - 105,372,332 (-)NCBI
GRCm389105,411,362 - 105,495,133 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359823   ⟹   NP_001346752
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399105,288,561 - 105,372,332 (-)NCBI
GRCm389105,411,362 - 105,495,133 (-)NCBI
Sequence:
RefSeq Acc Id: NM_175025   ⟹   NP_778190
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399105,288,561 - 105,372,332 (-)NCBI
GRCm389105,411,362 - 105,495,133 (-)NCBI
MGSCv379105,313,692 - 105,397,447 (-)RGD
Celera9105,007,157 - 105,115,618 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511711   ⟹   XP_006511774
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399105,288,561 - 105,372,310 (-)NCBI
GRCm389105,411,362 - 105,495,057 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511712   ⟹   XP_006511775
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399105,288,561 - 105,372,694 (-)NCBI
GRCm389105,411,362 - 105,496,038 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_778190   ⟸   NM_175025
- Peptide Label: isoform 2
- UniProtKB: Q80XR2 (UniProtKB/Swiss-Prot),   Q69ZL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240760   ⟸   NM_001253831
- Peptide Label: isoform 1
- UniProtKB: Q80XR2 (UniProtKB/Swiss-Prot),   Q3UZR5 (UniProtKB/TrEMBL),   Q69ZL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240763   ⟸   NM_001253834
- Peptide Label: isoform 2
- UniProtKB: Q80XR2 (UniProtKB/Swiss-Prot),   Q69ZL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240765   ⟸   NM_001253836
- Peptide Label: isoform 3
- UniProtKB: Q8BMS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511775   ⟸   XM_006511712
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511774   ⟸   XM_006511711
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001346752   ⟸   NM_001359823
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001346751   ⟸   NM_001359822
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000129617   ⟸   ENSMUST00000163879
RefSeq Acc Id: ENSMUSP00000082220   ⟸   ENSMUST00000085133
RefSeq Acc Id: ENSMUSP00000135646   ⟸   ENSMUST00000177074
RefSeq Acc Id: ENSMUSP00000135802   ⟸   ENSMUST00000177293
RefSeq Acc Id: ENSMUSP00000134902   ⟸   ENSMUST00000177334
RefSeq Acc Id: ENSMUSP00000108177   ⟸   ENSMUST00000112558
RefSeq Acc Id: ENSMUSP00000134764   ⟸   ENSMUST00000176770
RefSeq Acc Id: ENSMUSP00000135170   ⟸   ENSMUST00000176363
RefSeq Acc Id: ENSMUSP00000135732   ⟸   ENSMUST00000176651
RefSeq Acc Id: ENSMUSP00000135010   ⟸   ENSMUST00000176036
RefSeq Acc Id: ENSMUSP00000135320   ⟸   ENSMUST00000176190
RefSeq Acc Id: ENSMUSP00000039103   ⟸   ENSMUST00000038118
Protein Domains
Cation_ATPase_C   Cation_ATPase_N

Promoters
RGD ID:6844198
Promoter ID:MM_KWN:58625
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC009RIF.1,   UC009RIG.1,   UC009RII.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369105,397,256 - 105,397,756 (-)MPROMDB
RGD ID:8670686
Promoter ID:EPDNEW_M13373
Type:initiation region
Name:Atp2c1_1
Description:Mus musculus ATPase, Ca++-sequestering , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13374  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389105,495,077 - 105,495,137EPDNEW
RGD ID:8670688
Promoter ID:EPDNEW_M13374
Type:initiation region
Name:Atp2c1_2
Description:Mus musculus ATPase, Ca++-sequestering , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13373  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389105,521,257 - 105,521,317EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889008 AgrOrtholog
Ensembl Genes ENSMUSG00000032570 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000039103 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000082220 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000108177 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000129617 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000134764 UniProtKB/TrEMBL
  ENSMUSP00000134902 UniProtKB/TrEMBL
  ENSMUSP00000135010 UniProtKB/TrEMBL
  ENSMUSP00000135170 UniProtKB/TrEMBL
  ENSMUSP00000135320 UniProtKB/TrEMBL
  ENSMUSP00000135646 UniProtKB/TrEMBL
  ENSMUSP00000135732 UniProtKB/TrEMBL
  ENSMUSP00000135802 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038118 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000085133 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000112558 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000163879 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000176036 UniProtKB/TrEMBL
  ENSMUST00000176190 UniProtKB/TrEMBL
  ENSMUST00000176363 UniProtKB/TrEMBL
  ENSMUST00000176651 UniProtKB/TrEMBL
  ENSMUST00000176770 UniProtKB/TrEMBL
  ENSMUST00000177074 UniProtKB/TrEMBL
  ENSMUST00000177293 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000177334 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATP2C1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-type_ATPase_IIA_PMR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:235574 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1889008 ENTREZGENE
NCBI Gene 235574 ENTREZGENE
PANTHER PTHR42861:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cation_ATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp2c1 PhenoGen
PRINTS HATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81653 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81665 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs ATPase-IIA2_Ca UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt AT2C1_MOUSE UniProtKB/Swiss-Prot
  H3BIX7_MOUSE UniProtKB/TrEMBL
  H3BJ99_MOUSE UniProtKB/TrEMBL
  H3BJJ5_MOUSE UniProtKB/TrEMBL
  H3BJY0_MOUSE UniProtKB/TrEMBL
  H3BKB1_MOUSE UniProtKB/TrEMBL
  H3BL44_MOUSE UniProtKB/TrEMBL
  H3BLC2_MOUSE UniProtKB/TrEMBL
  H3BLI6_MOUSE UniProtKB/TrEMBL
  Q3TTD2_MOUSE UniProtKB/TrEMBL
  Q3TVY6_MOUSE UniProtKB/TrEMBL
  Q3UWW0_MOUSE UniProtKB/TrEMBL
  Q3UZR5 ENTREZGENE, UniProtKB/TrEMBL
  Q69ZL4 ENTREZGENE, UniProtKB/TrEMBL
  Q80XR2 ENTREZGENE
  Q8BMS7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9QMB9 UniProtKB/Swiss-Prot
  Q80YZ2 UniProtKB/Swiss-Prot