FLOT1 (flotillin 1) - Rat Genome Database

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Gene: FLOT1 (flotillin 1) Homo sapiens
Analyze
Symbol: FLOT1
Name: flotillin 1
RGD ID: 736684
HGNC Page HGNC:3757
Description: Enables protease binding activity. Involved in several processes, including positive regulation of cell-cell adhesion; positive regulation of cellular component organization; and protein localization to membrane. Acts upstream of with a positive effect on plasma membrane raft organization. Located in several cellular components, including basolateral plasma membrane; centriolar satellite; and uropod. Part of flotillin complex. Is active in dopaminergic synapse. Colocalizes with COP9 signalosome and cortical actin cytoskeleton.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: flotillin-1; integral membrane component of caveolae
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,727,709 - 30,742,687 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl630,727,709 - 30,742,732 (-)EnsemblGRCh38hg38GRCh38
GRCh37630,695,486 - 30,710,464 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,803,490 - 30,818,432 (-)NCBINCBI36Build 36hg18NCBI36
Build 34630,803,491 - 30,818,432NCBI
Celera632,293,643 - 32,308,593 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,495,459 - 30,510,242 (-)NCBIHuRef
CHM1_1630,697,639 - 30,712,561 (-)NCBICHM1_1
T2T-CHM13v2.0630,591,911 - 30,606,890 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
genetic disease  (IAGP)
JMP syndrome  (IAGP)
megacolon  (IAGP)
Q fever  (EXP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
8-Br-cAMP  (EXP)
aconitine  (ISO)
all-trans-retinoic acid  (EXP)
ammonium chloride  (ISO)
aristolochic acid A  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
calciol  (ISO)
carbon nanotube  (ISO)
cisplatin  (EXP)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (EXP)
coumarin  (EXP)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
doxorubicin  (EXP)
elemental selenium  (EXP)
ethanol  (ISO)
fipronil  (ISO)
folic acid  (ISO)
hexadecanoic acid  (EXP)
hydralazine  (EXP)
inulin  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
ivermectin  (EXP)
lovastatin  (ISO)
methidathion  (ISO)
microcystin RR  (EXP)
nefazodone  (ISO)
nickel atom  (EXP)
nickel dichloride  (ISO)
nickel sulfate  (EXP)
oleic acid  (EXP)
p-toluidine  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pravastatin  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
selenium atom  (EXP)
silicon dioxide  (EXP,ISO)
simvastatin  (ISO)
sodium arsenite  (EXP)
tamibarotene  (EXP)
tamoxifen  (EXP,ISO)
trichloroethene  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vitamin E  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:9153235   PMID:10212252   PMID:10462713   PMID:10931946   PMID:11001060   PMID:11042152   PMID:11159550   PMID:11167132   PMID:11481476   PMID:11598189   PMID:12202484  
PMID:12477932   PMID:14708344   PMID:15120622   PMID:15128873   PMID:15469992   PMID:15489334   PMID:15545008   PMID:15569306   PMID:15713644   PMID:15862967   PMID:15939299   PMID:16169070  
PMID:16196087   PMID:16198165   PMID:16341206   PMID:16480949   PMID:17081065   PMID:17113085   PMID:17307333   PMID:17548467   PMID:17587329   PMID:17600709   PMID:17897319   PMID:18000879  
PMID:18029348   PMID:18164080   PMID:18660489   PMID:18850735   PMID:19056867   PMID:19121286   PMID:19258392   PMID:19318123   PMID:19348413   PMID:19404397   PMID:19738201   PMID:19815536  
PMID:19851445   PMID:19946888   PMID:20027317   PMID:20360068   PMID:20430883   PMID:20458337   PMID:20682791   PMID:20810659   PMID:20848476   PMID:20880565   PMID:21119006   PMID:21187433  
PMID:21399631   PMID:21423176   PMID:21447726   PMID:21674799   PMID:21696602   PMID:21873635   PMID:21988832   PMID:22190034   PMID:22215737   PMID:22232557   PMID:22235335   PMID:22337587  
PMID:22669515   PMID:22869152   PMID:22936677   PMID:22939629   PMID:23012365   PMID:23064789   PMID:23319823   PMID:23376485   PMID:23533145   PMID:23581411   PMID:23602568   PMID:23625312  
PMID:23627023   PMID:23840303   PMID:23861967   PMID:23983584   PMID:24042857   PMID:24046456   PMID:24167781   PMID:24277378   PMID:24304721   PMID:24312169   PMID:24330780   PMID:24457600  
PMID:24533441   PMID:24612608   PMID:24695539   PMID:24711643   PMID:24747692   PMID:24809731   PMID:24830726   PMID:24886554   PMID:24890092   PMID:24983503   PMID:25180832   PMID:25204797  
PMID:25281560   PMID:25468996   PMID:25659154   PMID:25793370   PMID:25893292   PMID:25948494   PMID:25959826   PMID:26413934   PMID:26496610   PMID:26638075   PMID:26641092   PMID:26646322  
PMID:26682635   PMID:27181092   PMID:27221048   PMID:27342126   PMID:27346727   PMID:27377895   PMID:27448302   PMID:27609421   PMID:27684187   PMID:28514442   PMID:28581508   PMID:28645295  
PMID:28718761   PMID:28825855   PMID:28986522   PMID:29121065   PMID:29128334   PMID:29180619   PMID:29449217   PMID:29509190   PMID:29540532   PMID:29568061   PMID:29961565   PMID:30021884  
PMID:30064230   PMID:30194290   PMID:30452906   PMID:30471916   PMID:30581152   PMID:30614533   PMID:30631151   PMID:30639242   PMID:30771789   PMID:30820716   PMID:30833792   PMID:30838797  
PMID:30914515   PMID:30948266   PMID:31091453   PMID:31138766   PMID:31180492   PMID:31501420   PMID:31586073   PMID:31683489   PMID:31871319   PMID:31995728   PMID:32027876   PMID:32203420  
PMID:32296183   PMID:32513696   PMID:32707033   PMID:32780723   PMID:32814053   PMID:32814769   PMID:32877691   PMID:33001583   PMID:33024031   PMID:33144569   PMID:33242069   PMID:33545068  
PMID:33684176   PMID:33762435   PMID:33846817   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34115333   PMID:34135428   PMID:34650049   PMID:34709727   PMID:34774850   PMID:35140242  
PMID:35182466   PMID:35205757   PMID:35256949   PMID:35264565   PMID:35271311   PMID:35439318   PMID:35509820   PMID:35676659   PMID:35850772   PMID:35990908   PMID:36030824   PMID:36215168  
PMID:36244648   PMID:36647700   PMID:36691829   PMID:36697954  


Genomics

Comparative Map Data
FLOT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,727,709 - 30,742,687 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl630,727,709 - 30,742,732 (-)EnsemblGRCh38hg38GRCh38
GRCh37630,695,486 - 30,710,464 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,803,490 - 30,818,432 (-)NCBINCBI36Build 36hg18NCBI36
Build 34630,803,491 - 30,818,432NCBI
Celera632,293,643 - 32,308,593 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,495,459 - 30,510,242 (-)NCBIHuRef
CHM1_1630,697,639 - 30,712,561 (-)NCBICHM1_1
T2T-CHM13v2.0630,591,911 - 30,606,890 (-)NCBIT2T-CHM13v2.0
Flot1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,134,243 - 36,143,674 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,134,122 - 36,143,683 (+)EnsemblGRCm39 Ensembl
GRCm381735,823,320 - 35,832,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,823,230 - 35,832,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,960,302 - 35,969,732 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,431,410 - 35,440,840 (+)NCBIMGSCv36mm8
Celera1739,333,424 - 39,342,847 (+)NCBICelera
Cytogenetic Map17B1NCBI
Flot1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2202,917,864 - 2,927,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,917,137 - 2,927,978 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx202,969,295 - 2,979,369 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0202,974,276 - 2,984,354 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0203,000,638 - 3,010,732 (-)NCBIRnor_WKY
Rnor_6.0203,427,890 - 3,438,418 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,427,880 - 3,438,396 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,524,708 - 5,535,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,065,792 - 3,076,166 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,066,008 - 3,169,167 (-)NCBI
Celera20343,778 - 353,887 (-)NCBICelera
Cytogenetic Map20p12NCBI
Flot1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583713,560 - 729,924 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583717,246 - 729,924 (-)NCBIChiLan1.0ChiLan1.0
FLOT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1641,251,507 - 41,266,371 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,472,839 - 30,487,809 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,342,026 - 31,357,505 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,342,033 - 31,357,559 (-)Ensemblpanpan1.1panPan2
FLOT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112517,941 - 528,677 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12516,032 - 528,637 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12655,207 - 665,931 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012661,078 - 671,802 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12656,880 - 671,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112519,006 - 529,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012587,853 - 598,598 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012656,440 - 667,178 (-)NCBIUU_Cfam_GSD_1.0
Flot1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,021,923 - 34,035,815 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837380,288 - 401,071 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936837387,012 - 401,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLOT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,253,162 - 23,265,106 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,253,157 - 23,265,165 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,975,124 - 26,987,109 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FLOT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,714,354 - 41,725,820 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,714,402 - 41,725,397 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,425,408 - 30,437,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Flot1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,992,929 - 25,003,759 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,992,961 - 25,000,463 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FLOT1
13 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33		 pathogenic
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh37/hg19 6p21.33(chr6:30698482-30853003)x3 copy number gain Ductal breast carcinoma [RCV000207165] Chr6:30698482..30853003 [GRCh37]
Chr6:6p21.33		 uncertain significance
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p22.1-21.32(chr6:28130359-32108367)x3 copy number gain not provided [RCV000745592] Chr6:28130359..32108367 [GRCh37]
Chr6:6p22.1-21.32		 uncertain significance
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1		 pathogenic
GRCh37/hg19 6p21.33(chr6:30695007-30767013)x3 copy number gain not provided [RCV000847349] Chr6:30695007..30767013 [GRCh37]
Chr6:6p21.33		 uncertain significance
NC_000006.11:g.(?_30695893)_(31937492_?)dup duplication not provided [RCV003107453] Chr6:30695893..31937492 [GRCh37]
Chr6:6p21.33		 uncertain significance
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33		 likely pathogenic
NC_000006.11:g.(?_30695893)_(36953949_?)dup duplication Proteasome-associated autoinflammatory syndrome 1 [RCV003113679] Chr6:30695893..36953949 [GRCh37]
Chr6:6p21.33-21.2		 uncertain significance
NM_005803.4(FLOT1):c.668A>G (p.Tyr223Cys) single nucleotide variant Inborn genetic diseases [RCV002902368] Chr6:30740213 [GRCh38]
Chr6:30707990 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.275C>T (p.Thr92Met) single nucleotide variant Inborn genetic diseases [RCV002980840] Chr6:30741269 [GRCh38]
Chr6:30709046 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.1048G>A (p.Glu350Lys) single nucleotide variant Inborn genetic diseases [RCV002951181] Chr6:30730469 [GRCh38]
Chr6:30698246 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.862G>A (p.Glu288Lys) single nucleotide variant Inborn genetic diseases [RCV002916021] Chr6:30730962 [GRCh38]
Chr6:30698739 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.1243A>G (p.Ser415Gly) single nucleotide variant Inborn genetic diseases [RCV002709808] Chr6:30730033 [GRCh38]
Chr6:30697810 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.775G>A (p.Val259Met) single nucleotide variant Inborn genetic diseases [RCV002789231] Chr6:30731049 [GRCh38]
Chr6:30698826 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.970G>A (p.Ala324Thr) single nucleotide variant Inborn genetic diseases [RCV002767670] Chr6:30730547 [GRCh38]
Chr6:30698324 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.634G>T (p.Ala212Ser) single nucleotide variant Inborn genetic diseases [RCV002878769] Chr6:30740247 [GRCh38]
Chr6:30708024 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.692G>A (p.Arg231Gln) single nucleotide variant Inborn genetic diseases [RCV002674925] Chr6:30740189 [GRCh38]
Chr6:30707966 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.676G>A (p.Glu226Lys) single nucleotide variant Inborn genetic diseases [RCV002854910] Chr6:30740205 [GRCh38]
Chr6:30707982 [GRCh37]
Chr6:6p21.33		 uncertain significance
NM_005803.4(FLOT1):c.68T>G (p.Met23Arg) single nucleotide variant Inborn genetic diseases [RCV002678382] Chr6:30741843 [GRCh38]
Chr6:30709620 [GRCh37]
Chr6:6p21.33		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3486
Count of miRNA genes:941
Interacting mature miRNAs:1161
Transcripts:ENST00000376389, ENST00000413165, ENST00000416018, ENST00000418160, ENST00000438162, ENST00000445853, ENST00000454845, ENST00000456573, ENST00000470643, ENST00000476729, ENST00000484168, ENST00000484693, ENST00000487376
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
WI-18721  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,695,536 - 30,695,666UniSTSGRCh37
Build 36630,803,515 - 30,803,645RGDNCBI36
Celera632,293,668 - 32,293,798RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,495,484 - 30,495,614UniSTS
GeneMap99-GB4 RH Map6118.61UniSTS
Whitehead-RH Map6171.4UniSTS
RH91431  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,711,121 - 30,711,292UniSTSGRCh37
Build 36630,819,100 - 30,819,271RGDNCBI36
Celera632,309,261 - 32,309,432RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,510,935 - 30,511,106UniSTS
GeneMap99-GB4 RH Map6119.6UniSTS
G62116  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,711,002 - 30,711,123UniSTSGRCh37
Build 36630,818,981 - 30,819,102RGDNCBI36
Celera632,309,142 - 32,309,263RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,510,816 - 30,510,937UniSTS
PMC154982P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,711,745 - 30,712,330UniSTSGRCh37
Build 36630,819,724 - 30,820,309RGDNCBI36
Celera632,309,885 - 32,310,470RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,511,559 - 30,512,144UniSTS
PMC154982P2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,711,138 - 30,711,288UniSTSGRCh37
Build 36630,819,117 - 30,819,267RGDNCBI36
Celera632,309,278 - 32,309,428RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,510,952 - 30,511,102UniSTS
PMC154982P3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,711,907 - 30,712,203UniSTSGRCh37
Build 36630,819,886 - 30,820,182RGDNCBI36
Celera632,310,047 - 32,310,343RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,511,721 - 30,512,017UniSTS
PMC98754P3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,711,727 - 30,712,088UniSTSGRCh37
Build 36630,819,706 - 30,820,067RGDNCBI36
Celera632,309,867 - 32,310,228RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,511,541 - 30,511,902UniSTS
IER3_130  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,710,906 - 30,711,729UniSTSGRCh37
Build 36630,818,885 - 30,819,708RGDNCBI36
Celera632,309,046 - 32,309,869RGD
HuRef630,510,720 - 30,511,543UniSTS
STS-AA034911  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,711,008 - 30,711,157UniSTSGRCh37
Build 36630,818,987 - 30,819,136RGDNCBI36
Celera632,309,148 - 32,309,297RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,510,822 - 30,510,971UniSTS
GeneMap99-GB4 RH Map6118.0UniSTS
NCBI RH Map6426.2UniSTS
RH12614  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,708,310 - 30,708,518UniSTSGRCh37
Build 36630,816,289 - 30,816,497RGDNCBI36
Celera632,306,450 - 32,306,658RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,508,570 - 30,508,778UniSTS
GeneMap99-GB4 RH Map6118.5UniSTS
NCBI RH Map6473.9UniSTS
RH78215  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,711,596 - 30,711,721UniSTSGRCh37
Build 36630,819,575 - 30,819,700RGDNCBI36
Celera632,309,736 - 32,309,861RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,511,410 - 30,511,535UniSTS
GeneMap99-GB4 RH Map6119.27UniSTS
RH46785  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,695,709 - 30,695,868UniSTSGRCh37
Build 36630,803,688 - 30,803,847RGDNCBI36
Celera632,293,841 - 32,294,000RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,495,657 - 30,495,816UniSTS
GeneMap99-GB4 RH Map6119.93UniSTS
D6S2115  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,695,638 - 30,695,769UniSTSGRCh37
Build 36630,803,617 - 30,803,748RGDNCBI36
Celera632,293,770 - 32,293,901RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,495,586 - 30,495,717UniSTS
Stanford-G3 RH Map61611.0UniSTS
GeneMap99-G3 RH Map61743.0UniSTS
D6S2956  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37630,704,920 - 30,705,076UniSTSGRCh37
Build 36630,812,899 - 30,813,055RGDNCBI36
Celera632,303,052 - 32,303,216RGD
HuRef630,505,172 - 30,505,336UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 60 61 3 1 27 1
Medium 2432 2922 1723 622 1882 464 4352 2193 3707 418 1421 1607 171 1204 2788 4
Low 3 7 3 2 7 1 3 24 1 10 3 3 1 1 2
Below cutoff 1 1 2 1 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001318875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047418064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054329719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054329720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054329721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB088101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB103607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB202099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF085357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF089750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF117234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BA000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX248307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX927283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR788240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY101236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000376389   ⟹   ENSP00000365569
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,727,709 - 30,742,687 (-)Ensembl
RefSeq Acc Id: ENST00000413165   ⟹   ENSP00000395333
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,730,919 - 30,742,307 (-)Ensembl
RefSeq Acc Id: ENST00000416018   ⟹   ENSP00000412058
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,740,255 - 30,742,203 (-)Ensembl
RefSeq Acc Id: ENST00000418160   ⟹   ENSP00000404300
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,740,161 - 30,742,357 (-)Ensembl
RefSeq Acc Id: ENST00000438162   ⟹   ENSP00000400615
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,731,067 - 30,742,500 (-)Ensembl
RefSeq Acc Id: ENST00000445853   ⟹   ENSP00000398834
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,740,176 - 30,742,276 (-)Ensembl
RefSeq Acc Id: ENST00000454845   ⟹   ENSP00000391341
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,740,509 - 30,742,524 (-)Ensembl
RefSeq Acc Id: ENST00000470643
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,740,158 - 30,742,732 (-)Ensembl
RefSeq Acc Id: ENST00000476729
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,730,991 - 30,740,794 (-)Ensembl
RefSeq Acc Id: ENST00000484168
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,740,254 - 30,742,706 (-)Ensembl
RefSeq Acc Id: ENST00000484693
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,741,354 - 30,742,677 (-)Ensembl
RefSeq Acc Id: ENST00000487376
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl630,727,709 - 30,740,853 (-)Ensembl
RefSeq Acc Id: NM_001318875   ⟹   NP_001305804
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,727,709 - 30,742,687 (-)NCBI
CHM1_1630,697,614 - 30,712,736 (-)NCBI
T2T-CHM13v2.0630,591,911 - 30,606,890 (-)NCBI
Sequence:
RefSeq Acc Id: NM_005803   ⟹   NP_005794
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,727,709 - 30,742,687 (-)NCBI
GRCh37630,695,506 - 30,710,687 (-)NCBI
Build 36630,803,490 - 30,818,432 (-)NCBI Archive
HuRef630,495,459 - 30,510,242 (-)ENTREZGENE
CHM1_1630,697,614 - 30,712,736 (-)NCBI
T2T-CHM13v2.0630,591,911 - 30,606,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005248780   ⟹   XP_005248837
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,727,709 - 30,742,511 (-)NCBI
GRCh37630,695,506 - 30,710,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006714947   ⟹   XP_006715010
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,727,709 - 30,742,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017010157   ⟹   XP_016865646
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,727,709 - 30,742,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017010158   ⟹   XP_016865647
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,727,709 - 30,742,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047418064   ⟹   XP_047274020
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,727,709 - 30,742,511 (-)NCBI
RefSeq Acc Id: XM_054354002   ⟹   XP_054209977
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0630,591,911 - 30,606,707 (-)NCBI
RefSeq Acc Id: XM_054354003   ⟹   XP_054209978
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0630,591,911 - 30,606,716 (-)NCBI
RefSeq Acc Id: XM_054354004   ⟹   XP_054209979
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0630,591,911 - 30,606,717 (-)NCBI
RefSeq Acc Id: XM_054354005   ⟹   XP_054209980
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0630,591,911 - 30,606,890 (-)NCBI
RefSeq Acc Id: XM_054354006   ⟹   XP_054209981
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0630,591,911 - 30,606,707 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001305804 (Get FASTA)   NCBI Sequence Viewer  
  NP_005794 (Get FASTA)   NCBI Sequence Viewer  
  XP_005248837 (Get FASTA)   NCBI Sequence Viewer  
  XP_006715010 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865646 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865647 (Get FASTA)   NCBI Sequence Viewer  
  XP_047274020 (Get FASTA)   NCBI Sequence Viewer  
  XP_054185694 (Get FASTA)   NCBI Sequence Viewer  
  XP_054185695 (Get FASTA)   NCBI Sequence Viewer  
  XP_054185696 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186190 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186191 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186192 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186964 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187244 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187245 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187246 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187247 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187248 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209977 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209978 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209979 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209980 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209981 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC35387 (Get FASTA)   NCBI Sequence Viewer  
  AAD40192 (Get FASTA)   NCBI Sequence Viewer  
  AAF17215 (Get FASTA)   NCBI Sequence Viewer  
  AAH01146 (Get FASTA)   NCBI Sequence Viewer  
  AAI28155 (Get FASTA)   NCBI Sequence Viewer  
  AAP35740 (Get FASTA)   NCBI Sequence Viewer  
  AQY76816 (Get FASTA)   NCBI Sequence Viewer  
  AQY76817 (Get FASTA)   NCBI Sequence Viewer  
  AQY76818 (Get FASTA)   NCBI Sequence Viewer  
  BAB63320 (Get FASTA)   NCBI Sequence Viewer  
  BAC54934 (Get FASTA)   NCBI Sequence Viewer  
  BAD96250 (Get FASTA)   NCBI Sequence Viewer  
  BAE78620 (Get FASTA)   NCBI Sequence Viewer  
  BAF31269 (Get FASTA)   NCBI Sequence Viewer  
  BAG62849 (Get FASTA)   NCBI Sequence Viewer  
  CAG33227 (Get FASTA)   NCBI Sequence Viewer  
  EAX03325 (Get FASTA)   NCBI Sequence Viewer  
  EAX03326 (Get FASTA)   NCBI Sequence Viewer  
  EAX03327 (Get FASTA)   NCBI Sequence Viewer  
  O75955 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_005794   ⟸   NM_005803
- Peptide Label: isoform 1
- UniProtKB: Q9UNV8 (UniProtKB/Swiss-Prot),   O75955 (UniProtKB/Swiss-Prot),   Q5ST80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005248837   ⟸   XM_005248780
- Peptide Label: isoform X1
- UniProtKB: Q9UNV8 (UniProtKB/Swiss-Prot),   O75955 (UniProtKB/Swiss-Prot),   Q5ST80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006715010   ⟸   XM_006714947
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001305804   ⟸   NM_001318875
- Peptide Label: isoform 2
- UniProtKB: O75955 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016865647   ⟸   XM_017010158
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016865646   ⟸   XM_017010157
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSP00000400615   ⟸   ENST00000438162
RefSeq Acc Id: ENSP00000395333   ⟸   ENST00000413165
RefSeq Acc Id: ENSP00000391341   ⟸   ENST00000454845
RefSeq Acc Id: ENSP00000365569   ⟸   ENST00000376389
RefSeq Acc Id: ENSP00000412058   ⟸   ENST00000416018
RefSeq Acc Id: ENSP00000404300   ⟸   ENST00000418160
RefSeq Acc Id: ENSP00000398834   ⟸   ENST00000445853
RefSeq Acc Id: XP_047274020   ⟸   XM_047418064
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054209980   ⟸   XM_054354005
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054209979   ⟸   XM_054354004
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054209978   ⟸   XM_054354003
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054209981   ⟸   XM_054354006
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054209977   ⟸   XM_054354002
- Peptide Label: isoform X1
- UniProtKB: Q9UNV8 (UniProtKB/Swiss-Prot),   Q5ST80 (UniProtKB/TrEMBL)
Protein Domains
Band   Flotillin C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O75955-F1-model_v2 AlphaFold O75955 1-427 view protein structure

Promoters
RGD ID:6872420
Promoter ID:EPDNEW_H9375
Type:initiation region
Name:FLOT1_2
Description:flotillin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9376  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,742,357 - 30,742,417EPDNEW
RGD ID:6872422
Promoter ID:EPDNEW_H9376
Type:initiation region
Name:FLOT1_1
Description:flotillin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9375  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38630,742,685 - 30,742,745EPDNEW
RGD ID:6812956
Promoter ID:HG_ACW:67933
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:FLOT1.NAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 36630,806,454 - 30,806,954 (-)MPROMDB
RGD ID:6804240
Promoter ID:HG_KWN:52857
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Lymphoblastoid
Transcripts:OTTHUMT00000257564,   OTTHUMT00000257565
Position:
Human AssemblyChrPosition (strand)Source
Build 36630,816,141 - 30,817,102 (-)MPROMDB
RGD ID:6804239
Promoter ID:HG_KWN:52858
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000376385,   OTTHUMT00000076276,   OTTHUMT00000257555,   OTTHUMT00000257556,   OTTHUMT00000257557,   OTTHUMT00000257558,   OTTHUMT00000257559,   OTTHUMT00000257560,   OTTHUMT00000257561,   OTTHUMT00000257562,   OTTHUMT00000257563
Position:
Human AssemblyChrPosition (strand)Source
Build 36630,818,156 - 30,819,487 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:3757 AgrOrtholog
COSMIC FLOT1 COSMIC
Ensembl Genes ENSG00000137312 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000206379 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000206480 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000223654 UniProtKB/TrEMBL
  ENSG00000224740 UniProtKB/TrEMBL
  ENSG00000230143 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000232280 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000236271 UniProtKB/TrEMBL
Ensembl Protein ENSP00000365569 ENTREZGENE
  ENSP00000365569.3 UniProtKB/Swiss-Prot
  ENSP00000372873.4 UniProtKB/Swiss-Prot
  ENSP00000373056.4 UniProtKB/Swiss-Prot
  ENSP00000388032.1 UniProtKB/TrEMBL
  ENSP00000388104.1 UniProtKB/TrEMBL
  ENSP00000388153.1 UniProtKB/TrEMBL
  ENSP00000388517.1 UniProtKB/TrEMBL
  ENSP00000388861.2 UniProtKB/Swiss-Prot
  ENSP00000389138.1 UniProtKB/TrEMBL
  ENSP00000389698.1 UniProtKB/TrEMBL
  ENSP00000390747.1 UniProtKB/TrEMBL
  ENSP00000390909.1 UniProtKB/TrEMBL
  ENSP00000390961.1 UniProtKB/TrEMBL
  ENSP00000391341.1 UniProtKB/TrEMBL
  ENSP00000391438.2 UniProtKB/Swiss-Prot
  ENSP00000391633.1 UniProtKB/TrEMBL
  ENSP00000392683.1 UniProtKB/TrEMBL
  ENSP00000392736.1 UniProtKB/TrEMBL
  ENSP00000393145.1 UniProtKB/TrEMBL
  ENSP00000393409.1 UniProtKB/TrEMBL
  ENSP00000393741.1 UniProtKB/TrEMBL
  ENSP00000393767.1 UniProtKB/TrEMBL
  ENSP00000395333.1 UniProtKB/TrEMBL
  ENSP00000395732.1 UniProtKB/TrEMBL
  ENSP00000395846.1 UniProtKB/TrEMBL
  ENSP00000396247.1 UniProtKB/TrEMBL
  ENSP00000397108.1 UniProtKB/TrEMBL
  ENSP00000398834.1 UniProtKB/TrEMBL
  ENSP00000398866.1 UniProtKB/TrEMBL
  ENSP00000399313.1 UniProtKB/TrEMBL
  ENSP00000400615.1 UniProtKB/TrEMBL
  ENSP00000403273.1 UniProtKB/TrEMBL
  ENSP00000403574.1 UniProtKB/TrEMBL
  ENSP00000403627.1 UniProtKB/TrEMBL
  ENSP00000403917.1 UniProtKB/TrEMBL
  ENSP00000404300.1 UniProtKB/TrEMBL
  ENSP00000407101.1 UniProtKB/TrEMBL
  ENSP00000407122.1 UniProtKB/TrEMBL
  ENSP00000409375.1 UniProtKB/TrEMBL
  ENSP00000409995.1 UniProtKB/TrEMBL
  ENSP00000410255.1 UniProtKB/TrEMBL
  ENSP00000410658.1 UniProtKB/TrEMBL
  ENSP00000411030.1 UniProtKB/TrEMBL
  ENSP00000412058.1 UniProtKB/TrEMBL
  ENSP00000412484.1 UniProtKB/TrEMBL
  ENSP00000413293.1 UniProtKB/TrEMBL
  ENSP00000414435.1 UniProtKB/TrEMBL
  ENSP00000415094.1 UniProtKB/TrEMBL
  ENSP00000415104.1 UniProtKB/TrEMBL
  ENSP00000415215.1 UniProtKB/TrEMBL
  ENSP00000416243.1 UniProtKB/TrEMBL
  ENSP00000416355.1 UniProtKB/TrEMBL
  ENSP00000416413.1 UniProtKB/TrEMBL
Ensembl Transcript ENST00000376389 ENTREZGENE
  ENST00000376389.8 UniProtKB/Swiss-Prot
  ENST00000383382.8 UniProtKB/Swiss-Prot
  ENST00000383562.8 UniProtKB/Swiss-Prot
  ENST00000411778.5 UniProtKB/TrEMBL
  ENST00000411848.1 UniProtKB/TrEMBL
  ENST00000411944.5 UniProtKB/TrEMBL
  ENST00000413165.5 UniProtKB/TrEMBL
  ENST00000416018.5 UniProtKB/TrEMBL
  ENST00000416389.5 UniProtKB/TrEMBL
  ENST00000418160.5 UniProtKB/TrEMBL
  ENST00000420604.1 UniProtKB/TrEMBL
  ENST00000421565.5 UniProtKB/TrEMBL
  ENST00000422636.5 UniProtKB/TrEMBL
  ENST00000422714.5 UniProtKB/TrEMBL
  ENST00000424683.5 UniProtKB/TrEMBL
  ENST00000426417.5 UniProtKB/TrEMBL
  ENST00000427701.1 UniProtKB/TrEMBL
  ENST00000427784.5 UniProtKB/TrEMBL
  ENST00000428438.1 UniProtKB/TrEMBL
  ENST00000430384.5 UniProtKB/TrEMBL
  ENST00000430843.5 UniProtKB/TrEMBL
  ENST00000431913.5 UniProtKB/TrEMBL
  ENST00000431966.5 UniProtKB/TrEMBL
  ENST00000432428.5 UniProtKB/TrEMBL
  ENST00000436025.1 UniProtKB/TrEMBL
  ENST00000436197.5 UniProtKB/TrEMBL
  ENST00000436822.6 UniProtKB/Swiss-Prot
  ENST00000437093.5 UniProtKB/TrEMBL
  ENST00000438134.5 UniProtKB/TrEMBL
  ENST00000438162.5 UniProtKB/TrEMBL
  ENST00000439376.5 UniProtKB/TrEMBL
  ENST00000439396.5 UniProtKB/TrEMBL
  ENST00000439743.1 UniProtKB/TrEMBL
  ENST00000442932.5 UniProtKB/TrEMBL
  ENST00000444068.5 UniProtKB/TrEMBL
  ENST00000444497.5 UniProtKB/TrEMBL
  ENST00000444632.6 UniProtKB/Swiss-Prot
  ENST00000445319.5 UniProtKB/TrEMBL
  ENST00000445383.5 UniProtKB/TrEMBL
  ENST00000445395.1 UniProtKB/TrEMBL
  ENST00000445669.5 UniProtKB/TrEMBL
  ENST00000445853.5 UniProtKB/TrEMBL
  ENST00000446072.5 UniProtKB/TrEMBL
  ENST00000446416.1 UniProtKB/TrEMBL
  ENST00000454249.5 UniProtKB/TrEMBL
  ENST00000454773.5 UniProtKB/TrEMBL
  ENST00000454845.1 UniProtKB/TrEMBL
  ENST00000455034.5 UniProtKB/TrEMBL
  ENST00000456042.5 UniProtKB/TrEMBL
  ENST00000456844.1 UniProtKB/TrEMBL
  ENST00000457133.5 UniProtKB/TrEMBL
  ENST00000457733.5 UniProtKB/TrEMBL
  ENST00000458306.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.479.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000137312 GTEx
  ENSG00000206379 GTEx
  ENSG00000206480 GTEx
  ENSG00000223654 GTEx
  ENSG00000224740 GTEx
  ENSG00000230143 GTEx
  ENSG00000232280 GTEx
  ENSG00000236271 GTEx
HGNC ID HGNC:3757 ENTREZGENE
Human Proteome Map FLOT1 Human Proteome Map
InterPro Band_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Band_7/SPFH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Flotillin_C UniProtKB/TrEMBL
  Flotillin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 10211 ENTREZGENE
OMIM 606998 OMIM
PANTHER FLOTILLIN-1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13806 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Band_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Flot UniProtKB/TrEMBL
PharmGKB PA28175 PharmGKB
SMART PHB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF117892 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JJQ6_HUMAN UniProtKB/TrEMBL
  A0A140T905_HUMAN UniProtKB/TrEMBL
  A0A140T907_HUMAN UniProtKB/TrEMBL
  A0A140T910_HUMAN UniProtKB/TrEMBL
  A0A140T957_HUMAN UniProtKB/TrEMBL
  A0A140T959_HUMAN UniProtKB/TrEMBL
  A0A140T974_HUMAN UniProtKB/TrEMBL
  A0A140T9B1_HUMAN UniProtKB/TrEMBL
  A0A140T9C3_HUMAN UniProtKB/TrEMBL
  A0A140T9H7_HUMAN UniProtKB/TrEMBL
  A0A140T9L9_HUMAN UniProtKB/TrEMBL
  A0A140T9R1_HUMAN UniProtKB/TrEMBL
  A0A140T9W4_HUMAN UniProtKB/TrEMBL
  A0A140T9X0_HUMAN UniProtKB/TrEMBL
  A2AB09_HUMAN UniProtKB/TrEMBL
  A2AB10_HUMAN UniProtKB/TrEMBL
  A2AB11_HUMAN UniProtKB/TrEMBL
  A2AB12_HUMAN UniProtKB/TrEMBL
  A2AB13_HUMAN UniProtKB/TrEMBL
  A2ABJ5_HUMAN UniProtKB/TrEMBL
  A2VCL5_HUMAN UniProtKB/TrEMBL
  FLOT1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q5ST80 ENTREZGENE, UniProtKB/TrEMBL
  Q6IB58_HUMAN UniProtKB/TrEMBL
  Q9UNV8 ENTREZGENE
UniProt Secondary B4DVY7 UniProtKB/Swiss-Prot
  Q969J8 UniProtKB/Swiss-Prot
  Q9UHW1 UniProtKB/Swiss-Prot
  Q9UNV8 UniProtKB/Swiss-Prot