Tagln3 (transgelin 3) - Rat Genome Database

Name: Tagln3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tagln3 (transgelin 3) Mus musculus

Analyze

Symbol:

Tagln3

Name:

transgelin 3

RGD ID:

736619

MGI Page

MGI

Description:

Predicted to enable actin filament binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in central nervous system; gut; olfactory epithelium; peripheral nervous system; and retina. Orthologous to human TAGLN3 (transgelin 3).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

2700038H05Rik; 2900005O10Rik; AI426007; neuronal protein Np25; Np; Np25; transgelin-3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TAGLN3 (transgelin 3)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Tagln3 (transgelin 3)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Tagln3 (transgelin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TAGLN3 (transgelin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TAGLN3 (transgelin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tagln3 (transgelin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TAGLN3 (transgelin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TAGLN3 (transgelin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tagln3 (transgelin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TAGLN2 (transgelin 2)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Tagln3 (transgelin 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TAGLN3 (transgelin 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tagln3a (transgelin 3a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	tagln3b (transgelin 3b)	Alliance	DIOPT (ZFIN)
Drosophila melanogaster (fruit fly):	Chd64	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SCP1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cpn-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5023	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Mp20	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	tagln2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	45,531,591 - 45,545,271 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	45,531,593 - 45,544,971 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	45,711,230 - 45,724,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	45,711,230 - 45,724,608 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	45,711,343 - 45,724,644 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	45,630,562 - 45,643,863 (-)	NCBI		MGSCv36	mm8
Celera	16	46,088,034 - 46,101,263 (-)	NCBI		Celera
Cytogenetic Map	16	B5	NCBI
cM Map	16	29.99	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3H-1,2-dithiole-3-thione (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

chlordecone (EXP)

chlorpyrifos (EXP)

ciguatoxin CTX1B (EXP)

cisplatin (ISO)

cocaine (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

daunorubicin (ISO)

DDT (ISO)

decabromodiphenyl ether (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (EXP)

fenvalerate (ISO)

fulvestrant (ISO)

isotretinoin (ISO)

ivermectin (ISO)

ketamine (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methamphetamine (ISO)

ochratoxin A (ISO)

paracetamol (ISO)

phenethyl isothiocyanate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sarin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

temozolomide (ISO)

thapsigargin (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

triptonide (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

WIN 55212-2 (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IBA)

negative regulation of transcription by RNA polymerase II (IDA,IMP)

Cellular Component

actin cytoskeleton (IBA)

myelin sheath (HDA)

nucleus (IDA)

synapse (EXP,IDA,IMP)

Molecular Function

actin filament binding (IBA)

molecular_function (ND)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:15489334	PMID:15998716	PMID:16141072	PMID:16141073	PMID:16602821	PMID:16632597	PMID:17634366
PMID:18480465	PMID:21267068	PMID:21873635	PMID:27923395	PMID:28671696	PMID:30562941	PMID:32325033	PMID:32857879	PMID:34269176	PMID:34321999

Genomics

Comparative Map Data

Tagln3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	45,531,591 - 45,545,271 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	45,531,593 - 45,544,971 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	45,711,230 - 45,724,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	45,711,230 - 45,724,608 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	45,711,343 - 45,724,644 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	45,630,562 - 45,643,863 (-)	NCBI		MGSCv36	mm8
Celera	16	46,088,034 - 46,101,263 (-)	NCBI		Celera
Cytogenetic Map	16	B5	NCBI
cM Map	16	29.99	NCBI

TAGLN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	111,998,922 - 112,013,885 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	111,998,739 - 112,013,887 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	111,717,769 - 111,732,732 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	113,200,276 - 113,215,425 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	113,200,275 - 113,215,424	NCBI
Celera	3	110,116,666 - 110,131,815 (+)	NCBI		Celera
Cytogenetic Map	3	q13.2	NCBI
HuRef	3	109,092,929 - 109,108,077 (+)	NCBI		HuRef
CHM1_1	3	111,681,627 - 111,696,769 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	114,720,030 - 114,734,995 (+)	NCBI		T2T-CHM13v2.0

Tagln3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	68,562,482 - 68,576,058 (+)	NCBI		GRCr8
mRatBN7.2	11	55,099,887 - 55,113,457 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	55,099,743 - 55,113,485 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	63,874,826 - 63,888,393 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	56,536,706 - 56,550,273 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	55,642,796 - 55,656,336 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	60,072,983 - 60,086,552 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	60,072,727 - 60,086,553 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	11	57,505,005 - 57,518,933 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	60,668,085 - 60,681,692 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	56,587,304 - 56,600,874 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	56,645,293 - 56,658,463 (+)	NCBI
Celera	11	54,624,418 - 54,637,992 (+)	NCBI		Celera
Cytogenetic Map	11	q21	NCBI

Tagln3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	12,412,378 - 12,426,463 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	12,412,959 - 12,426,400 (+)	NCBI	ChiLan1.0	ChiLan1.0

TAGLN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	109,998,587 - 110,013,763 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	110,003,367 - 110,018,543 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	109,143,253 - 109,158,367 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	116,067,138 - 116,082,304 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

TAGLN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	16,638,371 - 16,652,418 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	16,638,362 - 16,652,423 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	16,740,287 - 16,754,046 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	16,876,375 - 16,890,186 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	16,876,360 - 16,890,183 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	16,686,506 - 16,700,298 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	16,732,143 - 16,745,953 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	17,277,135 - 17,290,982 (+)	NCBI		UU_Cfam_GSD_1.0

Tagln3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	137,757,248 - 137,771,202 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936834	812,676 - 826,759 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936834	812,681 - 826,759 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAGLN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	147,740,917 - 147,754,848 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	147,740,913 - 147,754,845 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	157,488,973 - 157,500,986 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TAGLN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	68,783,315 - 68,797,900 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	68,783,116 - 68,797,946 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	97,676,051 - 97,691,436 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tagln3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	36,559,383 - 36,574,932 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	36,560,502 - 36,575,129 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tagln3
548 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	162
Count of miRNA genes:	145
Interacting mature miRNAs:	147
Transcripts:	ENSMUST00000096057
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226768	Tibl9_m	tibia length 9, 5 week (mouse)					16	3317864	51420363	Mouse
27226785	Feml12_m	femur length 12, 5 week (mouse)					16	3317864	64620363	Mouse
26884432	Zlq7_m	zygomatic length QTL 7, 10 week (mouse)					16	3817864	64620363	Mouse
1357763	Lp1_m	lymphocyte proliferation 1 (mouse)			Not determined		16	6542979	65466552	Mouse
26884376	Skwq4_m	skull length QTL 4, 5 week (mouse)					16	8417864	90896888	Mouse
1301086	Lprm5_m	lymphoproliferation modifier 5 (mouse)			Not determined		16	11848824	45848923	Mouse
1301841	Lrnx9_m	learning-contextual 9 (mouse)			Not determined		16	12225360	46225471	Mouse
10045614	Rapop6_m	radiation-induced apoptosis 6 (mouse)			Not determined		16	14802921	48803032	Mouse
4142236	Pstc4_m	periosteal circumference 4 (mouse)			Not determined		16	15522909	49523112	Mouse
1357517	Bwtn1_m	body weight at necropsy 1 (mouse)			Not determined		16	20019329	85600826	Mouse
1300534	Bmd15_m	bone mineral density 15 (mouse)			Not determined		16	21938383	55938574	Mouse
4141179	Ipng3_m	imprinted postnatal growth 3 (mouse)			Not determined			22775252	57594076	Mouse
11059559	Lmr12a_m	leishmaniasis resistance 12a (mouse)					16	28792813	62792952	Mouse
11059560	Lmr12b_m	leishmaniasis resistance 12b (mouse)					16	28792813	62792952	Mouse
11049571	Lmr12c_m	leishmaniasis resistance 12c (mouse)					16	28792813	62792952	Mouse
1300915	Lmr12_m	leishmaniasis resistance 12 (mouse)			Not determined		16	28792813	62792952	Mouse
1301070	Cypr1_m	cytokine production 1 (mouse)			Not determined		16	32312795	66312933	Mouse
4142187	Arrd3_m	age-related retinal degeneration 3 (mouse)			Not determined			32522909	65466552	Mouse
1302096	Aod1a_m	autoimmune ovarian dysgenesis 1a (mouse)			Not determined		16	35446643	92573008	Mouse
26884416	Bzwq5_m	bi-zygomatic width QTL 5, 5 week (mouse)					16	37320362	84696888	Mouse
4142112	Skts-fp3_m	skin tumor susceptibility in FVB and PWK 3 (mouse)			Not determined		16	40053881	72924385	Mouse
11522747	Eae41_m	experimental allergic encephalomyelitis susceptibility 41 (mouse)					16	40399134	78015472	Mouse
1301138	Pcd4ts3_m	p-glycoprotein positive CD4 T cell subset 3 (mouse)			Not determined		16	40593923	74594076	Mouse
1357778	Diobq_m	diet-induced obesity QTL (mouse)			Not determined		16	42197817	82331174	Mouse
4141212	Imraq3_m	immune response to AAV2 QTL 3 (mouse)			Not determined		16	44383350	78383506	Mouse
1301719	Remslp3_m	rapid eye movement sleep 3 (mouse)			Not determined		16	44383350	78383506	Mouse
1558836	Dice1b_m	determination of interleukin 4 commitment 1b (mouse)			Not determined		16	45511000	72274485	Mouse

Markers in Region

AI426007

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	16	45,711,315 - 45,711,432	UniSTS	GRCm38
MGSCv37	16	45,711,428 - 45,711,545	UniSTS	GRCm37
Celera	16	46,088,119 - 46,088,236	UniSTS
Cytogenetic Map	16	B5	UniSTS
Whitehead/MRC_RH	16	539.26	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004939202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB031291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC166572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC043027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC055338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000096057 ⟹ ENSMUSP00000093762

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	16	45,531,593 - 45,544,971 (-)	Ensembl
GRCm38.p6 Ensembl	16	45,711,230 - 45,724,608 (-)	Ensembl

RefSeq Acc Id:

NM_019754 ⟹ NP_062728

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	45,531,593 - 45,544,894 (-)	NCBI
GRCm38	16	45,711,230 - 45,724,531 (-)	ENTREZGENE
MGSCv37	16	45,711,343 - 45,724,644 (-)	RGD
Celera	16	46,088,034 - 46,101,263 (-)	RGD
cM Map	16		ENTREZGENE

Sequence:

show sequence

AGAGTCCAGAGCGGCGCGTGGCTGCGCTTTTCTTTCCCGTTTGTAGGTGAAACCCCATTGGCTT
CATTGGCTCCTTGATTTTAAACCACGCCCGGCTTTCTGCCCGCTTTGCTGCTGCTGGGTTCGGC
CTCCCTGCCACATCCCAGCCGGGTTCTCAGGAAACCCGGGGGCTCCTGTGGCTGCTATTGTGTG
GATGCCGCGTGTGTCCTCTCTTCTCTTCCAGAGATGGCTAACAGGGGTCCGAGCTATGGCTTAA
GCCGAGAGGTGCAGGAGAAGATTGAGCAGAAGTATGACGCGGATCTGGAGAACAAGCTGGTGGA
CTGGATCATCCTGCAGTGTGCTGAGGATATAGAGCACCCGCCCCCGGGCAGGGCCCATTTTCAG
AAATGGTTGATGGACGGGACGGTCCTGTGCAAGCTGATAAACAGTTTATATCCACCAGGGCAAG
AACCCATCCCCAAGATCTCAGAGTCAAAGATGGCTTTTAAGCAGATGGAGCAAATCTCTCAGTT
CCTGAAAGCTGCCGAGGTCTATGGTGTCAGGACCACTGACATTTTTCAAACAGTGGATCTCTGG
GAAGGGAAGGACATGGCAGCTGTGCAGAGGACTCTGATGGCCTTGGGCAGTGTTGCAGTTACCA
AGGATGATGGCTGCTACCGGGGAGAGCCATCCTGGTTTCACAGGAAAGCCCAGCAGAATCGGAG
AGGATTTTCAGAGGAGCAACTTCGCCAGGGACAGAATGTCATAGGCCTGCAGATGGGCAGCAAC
AAGGGTGCCTCCCAGGCGGGCATGACGGGGTACGGGATGCCCAGGCAGATCATGTAAGATGCTG
TATAGTGAGTGCCCCCTGGTAGAGAGGACGGATGTTCCGCACCACAGCCCGTGACAAAGAAATA
GGTAGTCACCTGCTCACCTTCTCCTCTTTCTTGAAGCCTTCTGTCCCCTGTCCTTGCAAGTGCT
GCATTTCTGCTCAGACTCCACGCTGCCTACTGCTGCCTACTGCTGCCACCTTCTGTTCCTTTAG
AACTATGCAAAGACTCCCTTTCCTCTCTGACCTCCTGTGCCCTAAGGTCTTGGTTTGTTTGATT
ATTTATTTATTTATTTGCCAAAAAGTTTCTCTCCTTGACTCACAGAACGTATCCTAATAAACAA
ATTAGTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XR_004939202

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	16	45,531,591 - 45,545,271 (-)	NCBI

Sequence:

show sequence

AAGAAGCTCCCAGCGGGAGGCAGGCGGTCTGGCCTGTCTAGGAGAGGGCTGGTTTTGGGGCGCT
CTTAGCAACAGCCCTGGTTTGACCCTCCTTAGCCGTGAGAAAATCAAATCCAGGGCGCCTTGCT
TCCAATCTCCTGCACCATCCGCGGCGTAATGTTGAGACATCCTTTCTCCCGCCTGTTAATTACC
TGCTCTGGGCATCTCTAGCAAAGTGCTGCTGAGAGCGGAAGCAAGCAACCATCGCCCACCACCC
ACCGTCTGTCTGGGGGCTTATGCTCACGAATGAGTCCCATGTACATCATCCGGTCTGCCTGACA
GGCAGGACTGAGAAAGGGGGGTTCCAGCCCCCCGTGGGCTGGCCAGGGCTTTATTCTAGAGTCC
AGAGCGGCGCGTGGCTGCGCTTTTCTTTCCCGTTTGTAGGTGAAACCCCATTGGCTTCATTGGC
TCCTTGATTTTAAACCACGCCCGGCTTTCTGCCCGCTTTGCTGCTGCTGGGTTCGGCCTCCCTG
CCACATCCCAGCCGGGTTCTCAGGAAACCCGGGGGCTCCTGTGGCTGCTATTGTGTGGATGCCG
CGTGTGTCCTCTCTTCTCTTCCAGAGATGGCTAACAGGGGTCCGAGCTATGGCTTAAGCCGAGA
GGTGCAGGAGAAGATTGAGCAGAAGTATGACGCGGATCTGGAGAACAAGCTGGTGGACTGGATC
ATCCTGCAGTGTGCTGAGGATATAGAGCACCCGCCCCCGGGCAGGGCCCATTTTCAGAAATGGT
TGATGGACGGGACGGTCCTGTGCAAGCTGATAAACAGTTTATATCCACCAGGGCAAGAACCCAT
CCCCAAGATCTCAGAGTCAAAGATGGCTTTTAAGCAGATGGAGCAAATCTCTCAGTTCCTGAAA
GCTGCCGAGGTCTATGGTGTCAGGACCACTGACATTTTTCAAACAGTGGATCTCTGGGAAGGCT
TGGCTTTCATCTCTTAACTGAATTCCAGGGAAGGACATGGCAGCTGTGCAGAGGACTCTGATGG
CCTTGGGCAGTGTTGCAGTTACCAAGGATGATGGCTGCTACCGGGGAGAGCCATCCTGGTTTCA
CAGGAAAGCCCAGCAGAATCGGAGAGGATTTTCAGAGGAGCAACTTCGCCAGGGACAGAATGTC
ATAGGCCTGCAGATGGGCAGCAACAAGGGTGCCTCCCAGGCGGGCATGACGGGGTACGGGATGC
CCAGGCAGATCATGTAAGATGCTGTATAGTGAGTGCCCCCTGGTAGAGAGGACGGATGTTCCGC
ACCACAGCCCGTGACAAAGAAATAGGTAGTCACCTGCTCACCTTCTCCTCTTTCTTGAAGCCTT
CTGTCCCCTGTCCTTGCAAGTGCTGCATTTCTGCTCAGACTCCACGCTGCCTACTGCTGCCTAC
TGCTGCCACCTTCTGTTCCTTTAGAACTATGCAAAGACTCCCTTTCCTCTCTGACCTCCTGTGC
CCTAAGGTCTTGGTTTGTTTGATTATTTATTTATTTATTTGCCAAAAAGTTTCTCTCCTTGACT
CACAGAACGTATCCTAATAAACAAATTAGTCTGTGTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_062728	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH43027	(Get FASTA)	NCBI Sequence Viewer
	AAH55338	(Get FASTA)	NCBI Sequence Viewer
	BAA83499	(Get FASTA)	NCBI Sequence Viewer
	BAB28876	(Get FASTA)	NCBI Sequence Viewer
	BAC25365	(Get FASTA)	NCBI Sequence Viewer
	EDK98075	(Get FASTA)	NCBI Sequence Viewer
	EDK98076	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000093762
	ENSMUSP00000093762.5
GenBank Protein	Q9R1Q8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_062728 ⟸ NM_019754

- UniProtKB:

Q9R1Q8 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVLCK
LINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEVYGVRTTDIFQTVDLWEGKDMAAVQRT
LMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGY
GMPRQIM

hide sequence

RefSeq Acc Id:

ENSMUSP00000093762 ⟸ ENSMUST00000096057

Protein Domains

Calponin-homology (CH)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9R1Q8-F1-model_v2	AlphaFold	Q9R1Q8	1-199	view protein structure

Promoters

RGD ID:

8686294

Promoter ID:

EPDNEW_M21178

Type:

initiation region

Name:

Tagln3_1

Description:

Mus musculus transgelin 3 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M21179

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	45,724,397 - 45,724,457	EPDNEW

RGD ID:

8686296

Promoter ID:

EPDNEW_M21179

Type:

initiation region

Name:

Tagln3_2

Description:

Mus musculus transgelin 3 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M21178

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	16	45,724,536 - 45,724,596	EPDNEW

RGD ID:

6827548

Promoter ID:

MM_KWN:21116

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, MEF_B6

Transcripts:

OTTMUST00000066382

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	16	45,724,681 - 45,725,181 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1926784	AgrOrtholog
Ensembl Genes	ENSMUSG00000022658	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000096057	ENTREZGENE
	ENSMUST00000096057.5	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.418.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Calponin_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CH-domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM22_calponin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:56370	UniProtKB/Swiss-Prot
MGD	MGI:1926784	ENTREZGENE
NCBI Gene	56370	ENTREZGENE
PANTHER	CALPONIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSGELIN-3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Calponin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PF00307	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tagln3	PhenoGen
PRINTS	SM22CALPONIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSGELIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	CALPONIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CALPONIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PS50021	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SM00033	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47576	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	Q9D6K2_MOUSE	UniProtKB/TrEMBL
	Q9R1Q8	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar