Ptpn5 (protein tyrosine phosphatase, non-receptor type 5) - Rat Genome Database

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Gene: Ptpn5 (protein tyrosine phosphatase, non-receptor type 5) Mus musculus
Analyze
Symbol: Ptpn5
Name: protein tyrosine phosphatase, non-receptor type 5
RGD ID: 736590
MGI Page MGI
Description: Enables protein tyrosine phosphatase activity. Acts upstream of or within protein dephosphorylation. Predicted to be located in several cellular components, including perikaryon; proximal dendrite; and synaptic vesicle. Is expressed in several structures, including central nervous system; dorsal root ganglion; reproductive system; retina; and submandibular gland. Orthologous to human PTPN5 (protein tyrosine phosphatase non-receptor type 5); PARTICIPATES IN dopamine signaling pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH (+)-pilocarpine; 1,2-dimethylhydrazine; 4-vinylcyclohexene dioxide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: neural-specific protein-tyrosine phosphatase; St; Step; striatum-enriched protein-tyrosine phosphatase; tyrosine-protein phosphatase non-receptor type 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,727,543 - 46,783,774 (-)NCBIGRCm39mm39
GRCm39 Ensembl746,727,543 - 46,783,432 (-)Ensembl
GRCm38747,077,795 - 47,134,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl747,077,795 - 47,133,684 (-)EnsemblGRCm38mm10GRCm38
MGSCv37754,333,168 - 54,389,054 (-)NCBIGRCm37mm9NCBIm37
MGSCv36746,945,824 - 47,001,706 (-)NCBImm8
Celera742,560,280 - 42,616,180 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map730.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:7490079   PMID:7494467   PMID:8267598   PMID:8987810   PMID:9127733   PMID:9857190   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:16025111  
PMID:16141072   PMID:16141073   PMID:16280085   PMID:16602821   PMID:17360923   PMID:18287559   PMID:18708052   PMID:18923032   PMID:18932218   PMID:19625523   PMID:21204826   PMID:21267068  
PMID:21464302   PMID:21501258   PMID:21632937   PMID:21677750   PMID:21883219   PMID:22405502   PMID:22523092   PMID:22544749   PMID:22781170   PMID:22885232   PMID:23932588   PMID:24123152  
PMID:24194600   PMID:25093460   PMID:25103464   PMID:25130559   PMID:25583483   PMID:25992601   PMID:26223799   PMID:26270590   PMID:26450419   PMID:26574547   PMID:26915673   PMID:27457929  
PMID:27752082   PMID:28466270   PMID:29508281   PMID:29948948   PMID:30176350   PMID:30760987   PMID:30936304   PMID:31442405   PMID:31691882   PMID:32325033   PMID:33422638   PMID:34246631  
PMID:34270805   PMID:34290083  


Genomics

Comparative Map Data
Ptpn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,727,543 - 46,783,774 (-)NCBIGRCm39mm39
GRCm39 Ensembl746,727,543 - 46,783,432 (-)Ensembl
GRCm38747,077,795 - 47,134,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl747,077,795 - 47,133,684 (-)EnsemblGRCm38mm10GRCm38
MGSCv37754,333,168 - 54,389,054 (-)NCBIGRCm37mm9NCBIm37
MGSCv36746,945,824 - 47,001,706 (-)NCBImm8
Celera742,560,280 - 42,616,180 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map730.7NCBI
PTPN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1118,727,928 - 18,792,721 (-)EnsemblGRCh38hg38GRCh38
GRCh381118,727,928 - 18,792,721 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371118,749,475 - 18,814,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,706,051 - 18,769,965 (-)NCBINCBI36hg18NCBI36
Build 341118,706,052 - 18,769,874NCBI
Celera1118,885,312 - 18,948,746 (-)NCBI
Cytogenetic Map11p15.1NCBI
HuRef1118,434,330 - 18,498,764 (-)NCBIHuRef
CHM1_11118,748,812 - 18,813,611 (-)NCBICHM1_1
Ptpn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2197,620,638 - 97,681,186 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl197,620,642 - 97,679,882 (-)Ensembl
Rnor_6.01103,197,918 - 103,258,309 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1103,197,915 - 103,256,823 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01104,263,139 - 104,321,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4197,629,192 - 97,643,225 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1197,707,302 - 97,721,336 (-)NCBI
Celera191,865,125 - 91,880,882 (-)NCBICelera
Cytogenetic Map1q22NCBI
Ptpn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541433,377,322 - 33,437,118 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541433,381,783 - 33,436,974 (-)NCBIChiLan1.0ChiLan1.0
PTPN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11118,672,360 - 18,737,167 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1118,673,366 - 18,711,885 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01118,758,285 - 18,822,845 (-)NCBIMhudiblu_PPA_v0panPan3
PTPN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12141,097,563 - 41,154,247 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2141,097,569 - 41,136,706 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2140,576,516 - 40,632,837 (-)NCBI
ROS_Cfam_1.02142,220,694 - 42,277,125 (-)NCBI
UMICH_Zoey_3.12141,223,899 - 41,280,192 (-)NCBI
UNSW_CanFamBas_1.02141,401,047 - 41,457,402 (-)NCBI
UU_Cfam_GSD_1.02141,778,556 - 41,834,892 (-)NCBI
Ptpn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494744,491,082 - 44,552,326 (+)NCBI
SpeTri2.0NW_004936528523,884 - 586,306 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl240,458,903 - 40,523,363 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1240,458,865 - 40,521,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2243,468,196 - 43,530,692 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1146,134,109 - 46,197,246 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl146,153,340 - 46,199,002 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038143,475,470 - 143,539,473 (+)NCBIVero_WHO_p1.0
Ptpn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476610,147,859 - 10,204,657 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
U28216  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38747,082,785 - 47,082,977UniSTSGRCm38
MGSCv37754,338,155 - 54,338,347UniSTSGRCm37
Celera742,565,267 - 42,565,459UniSTS
Cytogenetic Map7B3-B5UniSTS
Whitehead_YAC7 UniSTS
U28217  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38747,078,490 - 47,078,661UniSTSGRCm38
MGSCv37754,333,860 - 54,334,031UniSTSGRCm37
Celera742,560,972 - 42,561,143UniSTS
Cytogenetic Map7B3-B5UniSTS
Whitehead_YAC7 UniSTS
Ptpn5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B3-B5UniSTS
cM Map753.0UniSTS
SHGC-32421  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38747,077,827 - 47,077,957UniSTSGRCm38
MGSCv37754,333,197 - 54,333,327UniSTSGRCm37
Celera742,560,309 - 42,560,439UniSTS
Celera742,559,976 - 42,560,439UniSTS
Cytogenetic Map7B3-B5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1333306047333196Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71343577947435779Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71360000047700000Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71690336849509583Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71958059053580679Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined72014282554142942Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72302446357024609Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72323914857239292Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72341710757417107Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72719819161202351Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72789112561891125Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3033306081485905Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73206509766065329Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73274478466744933Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3379830258499217Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3379830258499217Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3379830258499217Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3379830258499217Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73379830258499217Mouse
1357731Lvrq6_mliver weight QTL 6 (mouse)Not determined73379830258499217Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73379830258499217Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73379830258499217Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73379830258499217Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73440327768403475Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73450000051500000Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73466713968667295Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73479812168798270Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73658059092745138Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736580590116817642Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73760000072400000Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73760000087400000Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73824163872241834Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73877180072771936Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined740024463103860803Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74149907275499217Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74149907275499217Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745512542119094307Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74560000079600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2568
Count of miRNA genes:714
Interacting mature miRNAs:919
Transcripts:ENSMUST00000033142, ENSMUST00000102626, ENSMUST00000107617, ENSMUST00000126370, ENSMUST00000128358, ENSMUST00000130381, ENSMUST00000137722, ENSMUST00000139057, ENSMUST00000145321, ENSMUST00000149785, ENSMUST00000153192
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017322046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU052842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S80329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U28216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U28217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033142   ⟹   ENSMUSP00000033142
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,727,546 - 46,782,465 (-)Ensembl
GRCm38.p6 Ensembl747,077,798 - 47,132,717 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102626   ⟹   ENSMUSP00000099686
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,727,543 - 46,783,432 (-)Ensembl
GRCm38.p6 Ensembl747,077,795 - 47,133,684 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207172
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,732,202 - 46,783,185 (-)Ensembl
GRCm38.p6 Ensembl747,082,454 - 47,133,437 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207344
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,762,495 - 46,763,219 (-)Ensembl
GRCm38.p6 Ensembl747,112,747 - 47,113,471 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208324
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,731,173 - 46,741,084 (-)Ensembl
GRCm38.p6 Ensembl747,081,425 - 47,091,336 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208437
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,740,519 - 46,762,451 (-)Ensembl
GRCm38.p6 Ensembl747,090,771 - 47,112,703 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,731,410 - 46,738,316 (-)Ensembl
GRCm38.p6 Ensembl747,081,662 - 47,088,568 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,782,456 - 46,783,324 (-)Ensembl
GRCm38.p6 Ensembl747,132,708 - 47,133,576 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209161
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,727,546 - 46,782,074 (-)Ensembl
GRCm38.p6 Ensembl747,077,798 - 47,132,326 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209179
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,762,467 - 46,783,164 (-)Ensembl
GRCm38.p6 Ensembl747,112,719 - 47,133,416 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209184
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl746,762,485 - 46,783,325 (-)Ensembl
GRCm38.p6 Ensembl747,112,737 - 47,133,577 (-)Ensembl
RefSeq Acc Id: NM_001163565   ⟹   NP_001157037
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,546 - 46,782,346 (-)NCBI
GRCm38747,077,798 - 47,132,598 (-)NCBI
MGSCv37754,333,168 - 54,389,054 (-)RGD
Celera742,560,280 - 42,616,180 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_013643   ⟹   NP_038671
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,546 - 46,783,432 (-)NCBI
GRCm38747,077,798 - 47,133,684 (-)NCBI
MGSCv37754,333,168 - 54,389,054 (-)RGD
Celera742,560,280 - 42,616,180 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006540713   ⟹   XP_006540776
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,543 - 46,783,449 (-)NCBI
GRCm38747,077,795 - 47,133,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540714   ⟹   XP_006540777
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,543 - 46,783,449 (-)NCBI
GRCm38747,077,795 - 47,133,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540715   ⟹   XP_006540778
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,543 - 46,783,443 (-)NCBI
GRCm38747,077,795 - 47,133,695 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017322046   ⟹   XP_017177535
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,543 - 46,783,443 (-)NCBI
GRCm38747,077,795 - 47,133,695 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242238   ⟹   XP_030098098
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,543 - 46,783,774 (-)NCBI
GRCm38747,077,795 - 47,134,026 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152798   ⟹   XP_036008691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,543 - 46,783,449 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152799   ⟹   XP_036008692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,727,543 - 46,783,443 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038671   ⟸   NM_013643
- UniProtKB: P54830 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001157037   ⟸   NM_001163565
- UniProtKB: P54830 (UniProtKB/Swiss-Prot),   Q80WU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006540777   ⟸   XM_006540714
- Peptide Label: isoform X1
- UniProtKB: P54830 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006540778   ⟸   XM_006540715
- Peptide Label: isoform X1
- UniProtKB: P54830 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006540776   ⟸   XM_006540713
- Peptide Label: isoform X1
- UniProtKB: P54830 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017177535   ⟸   XM_017322046
- Peptide Label: isoform X1
- UniProtKB: P54830 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030098098   ⟸   XM_030242238
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000033142   ⟸   ENSMUST00000033142
RefSeq Acc Id: ENSMUSP00000099686   ⟸   ENSMUST00000102626
RefSeq Acc Id: XP_036008691   ⟸   XM_036152798
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036008692   ⟸   XM_036152799
- Peptide Label: isoform X1
Promoters
RGD ID:8664165
Promoter ID:EPDNEW_M10114
Type:initiation region
Name:Ptpn5_3
Description:Mus musculus protein tyrosine phosphatase, non-receptor type5 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10115  EPDNEW_M10116  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38747,132,329 - 47,132,389EPDNEW
RGD ID:8664167
Promoter ID:EPDNEW_M10115
Type:initiation region
Name:Ptpn5_1
Description:Mus musculus protein tyrosine phosphatase, non-receptor type5 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10114  EPDNEW_M10116  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38747,132,535 - 47,132,595EPDNEW
RGD ID:8664169
Promoter ID:EPDNEW_M10116
Type:initiation region
Name:Ptpn5_2
Description:Mus musculus protein tyrosine phosphatase, non-receptor type5 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10114  EPDNEW_M10115  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38747,133,614 - 47,133,674EPDNEW
RGD ID:6841885
Promoter ID:MM_KWN:50543
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000039688,   UC009HAA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36754,387,536 - 54,388,036 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97807 AgrOrtholog
Ensembl Genes ENSMUSG00000030854 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000033142 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099686 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000033142 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000102626 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_KIM-con UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_rcpt_R/non-rcpt_5 UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19259 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97807 ENTREZGENE
NCBI Gene 19259 ENTREZGENE
PANTHER PTHR46198 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptpn5 PhenoGen
PIRSF PTPRR UniProtKB/Swiss-Prot
PRINTS KIMPTPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P54830 ENTREZGENE, UniProtKB/Swiss-Prot
  Q80WU9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q64694 UniProtKB/Swiss-Prot
  Q8CAN0 UniProtKB/Swiss-Prot