Gdf9 (growth differentiation factor 9) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gdf9 (growth differentiation factor 9) Mus musculus
Analyze
Symbol: Gdf9
Name: growth differentiation factor 9
RGD ID: 736580
MGI Page MGI
Description: Predicted to enable cytokine activity. Acts upstream of or within negative regulation of cell growth and oocyte growth. Located in cytoplasm. Is expressed in several structures, including early conceptus; endocrine gland; gonad; and metanephros. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 14. Orthologous to human GDF9 (growth differentiation factor 9).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Gdf-9; growth/differentiation factor 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,321,773 - 53,328,731 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,321,850 - 53,328,731 (+)EnsemblGRCm39 Ensembl
GRCm381153,430,774 - 53,437,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,431,023 - 53,437,904 (+)EnsemblGRCm38mm10GRCm38
MGSCv371153,246,788 - 53,251,405 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,276,801 - 53,281,323 (+)NCBIMGSCv36mm8
Celera1158,013,006 - 58,017,623 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7760846   PMID:8186260   PMID:8429021   PMID:8849725   PMID:9070927   PMID:9858711   PMID:9882477   PMID:10349636   PMID:10379899   PMID:10687846   PMID:10704283   PMID:10725249  
PMID:10922068   PMID:10963875   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11376106   PMID:12040004   PMID:12477932   PMID:12714744   PMID:12887271   PMID:12912906   PMID:12959983  
PMID:14610273   PMID:14695909   PMID:14736745   PMID:15016837   PMID:15112318   PMID:15128595   PMID:15133038   PMID:15326356   PMID:15342483   PMID:15385414   PMID:15531364   PMID:15585573  
PMID:15761035   PMID:15970507   PMID:16141072   PMID:16141073   PMID:16495478   PMID:16602821   PMID:16690745   PMID:16926195   PMID:16943361   PMID:16997917   PMID:17062627   PMID:17553902  
PMID:17641088   PMID:17933754   PMID:18045843   PMID:18162287   PMID:18593614   PMID:18633140   PMID:18753614   PMID:18799693   PMID:19014927   PMID:19106224   PMID:19439730   PMID:19480014  
PMID:19505950   PMID:19538736   PMID:19553355   PMID:19553596   PMID:20032061   PMID:20382892   PMID:20736313   PMID:20857181   PMID:21047911   PMID:21226076   PMID:21267068   PMID:21557698  
PMID:21731673   PMID:21873635   PMID:21911477   PMID:22205697   PMID:22234469   PMID:22847922   PMID:23141291   PMID:23382188   PMID:23446452   PMID:23769843   PMID:24357321   PMID:24552588  
PMID:24586322   PMID:24952961   PMID:25100713   PMID:25253739   PMID:25416550   PMID:25917826   PMID:26254468   PMID:26267271   PMID:27050391   PMID:28504655   PMID:30060157   PMID:30302808  
PMID:31040401   PMID:31657143   PMID:32892421   PMID:32945847   PMID:33589683   PMID:33824958   PMID:33953177   PMID:34174788   PMID:34984599   PMID:35084365   PMID:35104175   PMID:36424497  
PMID:37494420  


Genomics

Comparative Map Data
Gdf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,321,773 - 53,328,731 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,321,850 - 53,328,731 (+)EnsemblGRCm39 Ensembl
GRCm381153,430,774 - 53,437,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,431,023 - 53,437,904 (+)EnsemblGRCm38mm10GRCm38
MGSCv371153,246,788 - 53,251,405 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,276,801 - 53,281,323 (+)NCBIMGSCv36mm8
Celera1158,013,006 - 58,017,623 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.94NCBI
GDF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385132,861,185 - 132,866,651 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5132,861,181 - 132,866,884 (-)EnsemblGRCh38hg38GRCh38
GRCh375132,196,877 - 132,202,343 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365132,224,777 - 132,228,376 (-)NCBINCBI36Build 36hg18NCBI36
Build 345132,225,179 - 132,228,124NCBI
Celera5128,326,902 - 128,330,501 (-)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5127,389,594 - 127,393,194 (-)NCBIHuRef
CHM1_15131,630,163 - 131,633,762 (-)NCBICHM1_1
T2T-CHM13v2.05133,380,938 - 133,386,405 (-)NCBIT2T-CHM13v2.0
Gdf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81038,090,021 - 38,100,801 (+)NCBIGRCr8
mRatBN7.21037,589,200 - 37,599,970 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1037,595,679 - 37,599,672 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1042,288,545 - 42,292,495 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01041,778,598 - 41,782,548 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01037,282,314 - 37,286,264 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01038,782,519 - 38,793,238 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1038,788,992 - 38,792,940 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01038,564,774 - 38,574,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41038,899,125 - 38,903,073 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11038,905,554 - 38,909,503 (+)NCBI
Celera1036,942,737 - 36,946,686 (+)NCBICelera
Cytogenetic Map10q22NCBI
Gdf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554084,234,208 - 4,239,795 (-)NCBIChiLan1.0ChiLan1.0
GDF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24128,171,157 - 128,179,146 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15126,310,721 - 126,318,717 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05128,278,496 - 128,284,003 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15134,437,497 - 134,442,706 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5134,437,497 - 134,442,846 (-)Ensemblpanpan1.1panPan2
GDF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11121,143,982 - 21,148,945 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1121,143,975 - 21,149,825 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1119,947,216 - 19,950,085 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01121,931,257 - 21,936,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1121,931,265 - 21,936,196 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11120,650,008 - 20,652,875 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01120,497,735 - 20,500,586 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01121,140,232 - 21,143,105 (-)NCBIUU_Cfam_GSD_1.0
Gdf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213115,347,586 - 115,353,836 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366472,353,198 - 2,356,790 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366472,351,604 - 2,357,043 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2135,181,089 - 135,187,026 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12135,181,494 - 135,184,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22140,650,007 - 140,652,964 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GDF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12335,678,956 - 35,684,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2335,679,368 - 35,682,338 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603442,258,633 - 42,263,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gdf9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473339,237,296 - 39,240,206 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473339,235,128 - 39,240,557 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gdf9
177 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:488
Count of miRNA genes:369
Interacting mature miRNAs:423
Transcripts:ENSMUST00000018382, ENSMUST00000145369, ENSMUST00000156037
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4141770Tcpm1_mT-cell phenotype modifier 1 (mouse)Not determined5145247953615930Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse

Markers in Region
Gdf9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381153,433,462 - 53,433,577UniSTSGRCm38
MGSCv371153,246,964 - 53,247,079UniSTSGRCm37
Celera1158,013,182 - 58,013,297UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1129.0UniSTS
L06444  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381153,437,593 - 53,437,744UniSTSGRCm38
MGSCv371153,251,095 - 53,251,246UniSTSGRCm37
Celera1158,017,313 - 58,017,464UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead_YAC11 UniSTS
UniSTS:236572  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381153,437,555 - 53,437,722UniSTSGRCm38
MGSCv371153,251,057 - 53,251,224UniSTSGRCm37
Celera1158,017,275 - 58,017,442UniSTS
Cytogenetic Map11B1.3UniSTS
Gdf9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381153,437,701 - 53,437,877UniSTSGRCm38
MGSCv371153,251,203 - 53,251,379UniSTSGRCm37
Celera1158,017,421 - 58,017,597UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1129.0UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000018382   ⟹   ENSMUSP00000018382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,324,126 - 53,328,731 (+)Ensembl
GRCm38.p6 Ensembl1153,433,299 - 53,437,904 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,323,669 - 53,324,607 (+)Ensembl
GRCm38.p6 Ensembl1153,432,842 - 53,433,780 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,321,850 - 53,327,729 (+)Ensembl
GRCm38.p6 Ensembl1153,431,023 - 53,436,902 (+)Ensembl
RefSeq Acc Id: NM_008110   ⟹   NP_032136
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,324,113 - 53,328,730 (+)NCBI
GRCm381153,433,286 - 53,437,903 (+)NCBI
MGSCv371153,246,788 - 53,251,405 (+)RGD
Celera1158,013,006 - 58,017,623 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532220   ⟹   XP_006532283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,321,773 - 53,328,730 (+)NCBI
GRCm381153,430,776 - 53,437,903 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532221   ⟹   XP_006532284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,321,796 - 53,328,730 (+)NCBI
GRCm381153,430,776 - 53,437,903 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245570   ⟹   XP_030101430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,321,795 - 53,328,731 (+)NCBI
GRCm381153,430,774 - 53,437,904 (+)NCBI
Sequence:
RefSeq Acc Id: NP_032136   ⟸   NM_008110
- Peptide Label: precursor
- UniProtKB: Q07105 (UniProtKB/Swiss-Prot),   Q3UWR9 (UniProtKB/TrEMBL),   Q7TPZ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532284   ⟸   XM_006532221
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006532283   ⟸   XM_006532220
- Peptide Label: isoform X2
- UniProtKB: Q7TPZ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101430   ⟸   XM_030245570
- Peptide Label: isoform X1
- UniProtKB: Q07105 (UniProtKB/Swiss-Prot),   Q3UWR9 (UniProtKB/TrEMBL),   Q7TPZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000018382   ⟸   ENSMUST00000018382
Protein Domains
TGF-beta family profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q07105-F1-model_v2 AlphaFold Q07105 1-441 view protein structure

Promoters
RGD ID:6820927
Promoter ID:MM_KWN:7373
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000061326,   ENSMUST00000109019,   OTTMUST00000000143,   OTTMUST00000071560,   UC007IVZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361153,242,921 - 53,244,972 (+)MPROMDB
RGD ID:8674602
Promoter ID:EPDNEW_M15332
Type:single initiation site
Name:Gdf9_1
Description:Mus musculus growth differentiation factor 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381153,433,355 - 53,433,415EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95692 AgrOrtholog
Ensembl Genes ENSMUSG00000018238 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000018382 ENTREZGENE
  ENSMUST00000018382.7 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Growth_differentiation_fac-9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF-b_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF-beta-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGFb_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14566 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95692 ENTREZGENE
NCBI Gene 14566 ENTREZGENE
PANTHER PTHR11848 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11848:SF19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TGF_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gdf9 PhenoGen
PROSITE TGF_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TGFB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GDF9_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UWR9 ENTREZGENE, UniProtKB/TrEMBL
  Q7TPZ4 ENTREZGENE, UniProtKB/TrEMBL