F2rl2 (coagulation factor II thrombin receptor like 2) - Rat Genome Database

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Pathways
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Gene: F2rl2 (coagulation factor II thrombin receptor like 2) Mus musculus
Analyze
Symbol: F2rl2
Name: coagulation factor II thrombin receptor like 2 (Ensembl:coagulation factor II (thrombin) receptor-like 2)
RGD ID: 736561
MGI Page MGI
Description: Enables proteinase-activated receptor activity and receptor ligand activity. Involved in G protein-coupled receptor signaling pathway; ligand-gated ion channel signaling pathway; and positive regulation of insulin secretion. Located in apical plasma membrane. Is expressed in several structures, including central nervous system; liver; retina; skin; and spleen. Orthologous to human F2RL2 (coagulation factor II thrombin receptor like 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coagulation factor II (thrombin) receptor-like 2; coagulation factor II receptor-like 2; F730031A08; P; PA; PAR-3; PAR3; protease-activated receptor 3; Proteinase activated receptor 3 precursor (PAR-3) (Thrombin receptor-like 2) (Coagulation factor II receptor-like 2); proteinase-activated receptor 3; thrombin receptor-like 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,833,428 - 95,839,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,833,361 - 95,839,247 (+)EnsemblGRCm39 Ensembl
GRCm381395,696,920 - 95,702,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,696,853 - 95,702,739 (+)EnsemblGRCm38mm10GRCm38
MGSCv371396,466,875 - 96,472,723 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,797,656 - 96,803,438 (+)NCBIMGSCv36mm8
Celera1399,313,808 - 99,319,652 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Cross Talk Pathways Between Coagulation and Inflammation. Foley JH and Conway EM, Circ Res. 2016 Apr 29;118(9):1392-408. doi: 10.1161/CIRCRESAHA.116.306853.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Early embryonic expression of murine coagulation system components. Ong K, etal., Thromb Haemost 2000 Dec;84(6):1023-30.
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9087410   PMID:9716134   PMID:9722561   PMID:10085414   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12384423   PMID:12477932   PMID:12598324   PMID:14980205  
PMID:15457341   PMID:15582715   PMID:16094321   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16892058   PMID:17095716   PMID:17158345   PMID:17606903   PMID:18347074   PMID:18412955  
PMID:20930120   PMID:21267068   PMID:21518438   PMID:21677750   PMID:21873635   PMID:21907694   PMID:22117049   PMID:23083737   PMID:23325830   PMID:23405206   PMID:23647384   PMID:23739922  
PMID:24830314   PMID:25261684   PMID:25278288   PMID:25733582   PMID:25954015   PMID:26742564   PMID:27184845   PMID:28179424   PMID:28827518   PMID:28882883   PMID:30271984   PMID:30870413  


Genomics

Comparative Map Data
F2rl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,833,428 - 95,839,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,833,361 - 95,839,247 (+)EnsemblGRCm39 Ensembl
GRCm381395,696,920 - 95,702,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,696,853 - 95,702,739 (+)EnsemblGRCm38mm10GRCm38
MGSCv371396,466,875 - 96,472,723 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,797,656 - 96,803,438 (+)NCBIMGSCv36mm8
Celera1399,313,808 - 99,319,652 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.38NCBI
F2RL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38576,615,482 - 76,623,403 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl576,615,482 - 76,623,413 (-)EnsemblGRCh38hg38GRCh38
GRCh37575,911,307 - 75,919,228 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36575,947,063 - 75,954,996 (-)NCBINCBI36Build 36hg18NCBI36
Build 34575,947,063 - 75,954,996NCBI
Celera571,805,260 - 71,813,193 (-)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,119,015 - 71,126,968 (-)NCBIHuRef
CHM1_1575,344,295 - 75,352,247 (-)NCBICHM1_1
T2T-CHM13v2.0577,097,223 - 77,105,145 (-)NCBIT2T-CHM13v2.0
F2rl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,706,766 - 28,711,808 (+)NCBIGRCr8
mRatBN7.2226,972,054 - 26,977,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,972,054 - 26,977,098 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx234,011,700 - 34,016,699 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0232,111,806 - 32,116,807 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,928,439 - 26,933,433 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0226,240,385 - 26,245,533 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl226,240,385 - 26,245,533 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0245,371,780 - 45,376,928 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4226,073,852 - 26,078,618 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1225,994,220 - 25,998,987 (+)NCBI
Celera223,033,959 - 23,038,978 (+)NCBICelera
Cytogenetic Map2q12NCBI
F2rl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542524,246,333 - 24,254,887 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542524,246,333 - 24,254,887 (+)NCBIChiLan1.0ChiLan1.0
F2RL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2438,681,399 - 38,689,370 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,835,029 - 36,842,961 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0538,680,372 - 38,688,509 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1539,297,424 - 39,305,370 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl539,297,424 - 39,305,370 (+)Ensemblpanpan1.1panPan2
F2RL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,967,278 - 29,974,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl329,967,312 - 29,972,872 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha331,206,044 - 31,213,084 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,891,456 - 29,898,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl329,891,199 - 29,898,494 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1329,822,502 - 29,829,542 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,802,374 - 29,809,212 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0330,172,976 - 30,180,016 (+)NCBIUU_Cfam_GSD_1.0
F2rl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213190,515,607 - 190,522,114 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936549337,024 - 342,948 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936549336,871 - 342,992 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F2RL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,535,676 - 85,541,767 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1285,534,188 - 85,542,062 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,181,035 - 87,188,670 (+)NCBISscrofa10.2Sscrofa10.2susScr3
F2RL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1470,887,979 - 70,895,419 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl470,886,113 - 70,895,113 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604919,720,145 - 19,727,047 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
F2rl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248691,073,656 - 1,077,635 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248691,073,481 - 1,078,207 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in F2rl2
242 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:428
Count of miRNA genes:305
Interacting mature miRNAs:337
Transcripts:ENSMUST00000022182
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
12880402Emlq1_memotional learning QTL 1 (mouse)137810885896866553Mouse
12879495Fexq1_mfear expression QTL 1 (mouse)137826885895836553Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse

Markers in Region
UniSTS:491313  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37589,001,108 - 89,001,416UniSTSGRCm37
Celera586,721,626 - 86,721,934UniSTS
Cytogenetic Map13D1UniSTS
cM Map1347.02UniSTS
U92972  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13D1UniSTS
cM Map1347.02UniSTS
Whitehead/MRC_RH13829.41UniSTS
F2rl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381395,700,766 - 95,700,885UniSTSGRCm38
MGSCv371396,470,707 - 96,470,880UniSTSGRCm37
Celera1399,317,650 - 99,317,769UniSTS
Cytogenetic Map13D1UniSTS
cM Map1347.02UniSTS
cM Map1347.02UniSTS
cM Map1347.01UniSTS
F2rl2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381395,700,752 - 95,700,925UniSTSGRCm38
MGSCv371396,470,707 - 96,470,880UniSTSGRCm37
Celera1399,317,636 - 99,317,809UniSTS
Cytogenetic Map13D1UniSTS
cM Map1347.02UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000022182   ⟹   ENSMUSP00000022182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1395,833,361 - 95,839,247 (+)Ensembl
GRCm38.p6 Ensembl1395,696,853 - 95,702,739 (+)Ensembl
RefSeq Acc Id: NM_010170   ⟹   NP_034300
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391395,833,428 - 95,839,276 (+)NCBI
GRCm381395,696,920 - 95,702,768 (+)ENTREZGENE
MGSCv371396,466,875 - 96,472,723 (+)RGD
Celera1399,313,808 - 99,319,652 (+)RGD
cM Map13 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_034300 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC53137 (Get FASTA)   NCBI Sequence Viewer  
  AAI40986 (Get FASTA)   NCBI Sequence Viewer  
  BAC40886 (Get FASTA)   NCBI Sequence Viewer  
  BAE22460 (Get FASTA)   NCBI Sequence Viewer  
  EDL00900 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000022182
  ENSMUSP00000022182.5
GenBank Protein O08675 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_034300   ⟸   NM_010170
- Peptide Label: precursor
- UniProtKB: B9EIT2 (UniProtKB/Swiss-Prot),   Q3UXV3 (UniProtKB/Swiss-Prot),   O08675 (UniProtKB/Swiss-Prot),   Q8BJB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000022182   ⟸   ENSMUST00000022182
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08675-F1-model_v2 AlphaFold O08675 1-369 view protein structure

Promoters
RGD ID:8681094
Promoter ID:EPDNEW_M18560
Type:initiation region
Name:F2rl2_1
Description:Mus musculus coagulation factor II receptor-like 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381395,696,974 - 95,697,034EPDNEW
RGD ID:6823878
Promoter ID:MM_KWN:14962
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_010170
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361396,466,171 - 96,466,772 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1298208 AgrOrtholog
Ensembl Genes ENSMUSG00000021675 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022182 ENTREZGENE
  ENSMUST00000022182.5 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_act_rcpt_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protea_act_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14064 UniProtKB/Swiss-Prot
MGD MGI:1298208 ENTREZGENE
NCBI Gene 14064 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEINASE-ACTIVATED RECEPTOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen F2rl2 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASEAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASEAR3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B9EIT2 ENTREZGENE
  O08675 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3UXV3 ENTREZGENE
  Q8BJB7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B9EIT2 UniProtKB/Swiss-Prot
  Q3UXV3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 F2rl2  coagulation factor II thrombin receptor like 2  F2rl2  coagulation factor II (thrombin) receptor-like 2  Symbol and/or name change 5135510 APPROVED