Chp1 (calcineurin-like EF hand protein 1) - Rat Genome Database

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Gene: Chp1 (calcineurin-like EF hand protein 1) Mus musculus
Analyze
Symbol: Chp1
Name: calcineurin-like EF hand protein 1
RGD ID: 736500
MGI Page MGI
Description: Predicted to enable several functions, including calcium ion binding activity; calcium-dependent protein binding activity; and microtubule binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; regulation of protein modification process; and regulation of protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in several cellular components, including Golgi membrane; microtubule cytoskeleton; and transport vesicle. Is expressed in genitourinary system. Human ortholog(s) of this gene implicated in spastic ataxia. Orthologous to human CHP1 (calcineurin like EF-hand protein 1); PARTICIPATES IN Alzheimer's disease pathway; amyotrophic lateral sclerosis pathway; apoptotic cell death pathway; INTERACTS WITH 1,2-dimethylhydrazine; Benzo[k]fluoranthene; carbon nanotube.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1500003O03Rik; AA960066; AI046351; Cahp; calcineurin B homologous protein 1; calcineurin B-like protein; calcineurin homologous protein; calcium binding protein P22; calcium-binding protein CHP; calcium-binding protein p22; Chp; EF-hand calcium-binding domain-containing protein p22; p24; RP23-22A15.1; sid 470; Sid4; Sid470p; v; vac
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15364  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,378,172 - 119,417,505 (+)NCBIGRCm39mm39
GRCm39 Ensembl2119,378,178 - 119,417,508 (+)Ensembl
GRCm382119,547,707 - 119,587,024 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,547,697 - 119,587,027 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,373,443 - 119,412,760 (+)NCBIGRCm37mm9NCBIm37
MGSCv362119,239,155 - 119,278,461 (+)NCBImm8
Celera2120,700,969 - 120,740,985 (+)NCBICelera
Cytogenetic Map2E5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16083881   PMID:16141072   PMID:16141073  
PMID:17082620   PMID:18287559   PMID:18799693   PMID:18815128   PMID:23904602   PMID:27113764   PMID:28378742   PMID:30550785   PMID:31607845   PMID:32325033  


Genomics

Comparative Map Data
Chp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,378,172 - 119,417,505 (+)NCBIGRCm39mm39
GRCm39 Ensembl2119,378,178 - 119,417,508 (+)Ensembl
GRCm382119,547,707 - 119,587,024 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,547,697 - 119,587,027 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,373,443 - 119,412,760 (+)NCBIGRCm37mm9NCBIm37
MGSCv362119,239,155 - 119,278,461 (+)NCBImm8
Celera2120,700,969 - 120,740,985 (+)NCBICelera
Cytogenetic Map2E5NCBI
CHP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1541,230,839 - 41,281,887 (+)EnsemblGRCh38hg38GRCh38
GRCh381541,231,156 - 41,281,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371541,523,466 - 41,574,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,310,729 - 39,361,377 (+)NCBINCBI36hg18NCBI36
Build 341539,310,728 - 39,361,373NCBI
Celera1518,291,415 - 18,342,063 (+)NCBI
Cytogenetic Map15q15.1NCBI
HuRef1518,371,799 - 18,422,604 (+)NCBIHuRef
CHM1_11541,641,426 - 41,692,297 (+)NCBICHM1_1
Chp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23106,536,009 - 106,571,255 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3106,536,004 - 106,571,251 (+)Ensembl
Rnor_6.03111,354,506 - 111,389,998 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,354,506 - 111,389,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,902,988 - 117,938,480 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,066,389 - 106,101,635 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13105,962,816 - 105,998,059 (+)NCBI
Celera3105,447,792 - 105,483,065 (+)NCBICelera
Cytogenetic Map3q35NCBI
Chp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,090,034 - 8,132,870 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,090,034 - 8,131,605 (+)NCBIChiLan1.0ChiLan1.0
CHP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11538,418,815 - 38,466,925 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,418,815 - 38,467,681 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01520,172,874 - 20,223,382 (+)NCBIMhudiblu_PPA_v0panPan3
CHP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,304,939 - 8,352,833 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,305,007 - 8,350,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,363,447 - 8,409,616 (+)NCBI
ROS_Cfam_1.0308,438,344 - 8,484,537 (+)NCBI
UMICH_Zoey_3.1308,359,874 - 8,408,027 (+)NCBI
UNSW_CanFamBas_1.0308,467,375 - 8,515,299 (+)NCBI
UU_Cfam_GSD_1.0308,598,734 - 8,645,069 (+)NCBI
Chp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,763,916 - 86,812,248 (+)NCBI
SpeTri2.0NW_0049364714,611,980 - 4,660,320 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,073,919 - 130,112,753 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,073,919 - 130,112,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,221,139 - 145,259,701 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,734,698 - 41,785,273 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2641,733,063 - 41,785,586 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604899,207,184 - 99,258,544 (+)NCBIVero_WHO_p1.0
Chp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248048,431,999 - 8,474,458 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI046351  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382119,586,587 - 119,586,729UniSTSGRCm38
GRCm381632,410,664 - 32,410,806UniSTSGRCm38
MGSCv371632,410,750 - 32,410,892UniSTSGRCm37
MGSCv372119,412,323 - 119,412,465UniSTSGRCm37
Celera1632,894,928 - 32,895,070UniSTS
Celera2120,740,547 - 120,740,689UniSTS
Cytogenetic Map2E5UniSTS
Whitehead/MRC_RH16319.38UniSTS
38.MMHAP33FRE11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382119,581,688 - 119,581,838UniSTSGRCm38
MGSCv372119,407,424 - 119,407,574UniSTSGRCm37
Celera2120,735,627 - 120,735,777UniSTS
Cytogenetic Map2E5UniSTS
Whitehead_YAC2 UniSTS
D18051  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382119,586,904 - 119,587,009UniSTSGRCm38
MGSCv372119,412,640 - 119,412,745UniSTSGRCm37
Celera2120,740,865 - 120,740,970UniSTS
Cytogenetic Map2E5UniSTS
Whitehead_YAC2 UniSTS
AA960066  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382119,586,714 - 119,586,937UniSTSGRCm38
GRCm381632,410,791 - 32,411,014UniSTSGRCm38
MGSCv371632,410,877 - 32,411,100UniSTSGRCm37
MGSCv372119,412,450 - 119,412,673UniSTSGRCm37
Celera1632,895,055 - 32,895,278UniSTS
Celera2120,740,674 - 120,740,898UniSTS
Cytogenetic Map2E5UniSTS
Whitehead/MRC_RH16305.43UniSTS
RH143965  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381632,408,960 - 32,409,237UniSTSGRCm38
GRCm382119,584,609 - 119,585,341UniSTSGRCm38
MGSCv371632,409,046 - 32,409,323UniSTSGRCm37
MGSCv372119,410,345 - 119,411,077UniSTSGRCm37
Celera1632,893,406 - 32,893,683UniSTS
Celera2120,738,633 - 120,739,365UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map16B3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274693773129371085Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284182854148680255Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284182854148825550Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286265371120265478Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286265371120265478Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286265371120265478Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286265371120265478Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287610298121610433Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288184658122184825Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88313078122313225Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291259629125259759Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292948120126948262Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294400000154400000Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297292889131293051Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297292889131293051Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297379883131379883Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297379883131379883Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100993579134993788Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2101112449135112609Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2101112449135112609Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2101112449135112609Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102800000160100000Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103265371129371085Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103265371167370436Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106391660140391809Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107413756141413756Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110647738144647887Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2111085773154512747Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111331784145331901Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111331784145331901Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111331784145331901Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111331784145331901Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111709108145709243Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111781466145781606Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112194642128331901Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112194642128331901Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112370826146371085Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112370826146371085Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112370826146371085Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114457594132872237Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115370937149371074Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115370937149371074Mouse
13506762Tbvq2_mtrabecular bone volume QTL 2 (mouse)2115600000124900000Mouse
1558825Aabpr_maberrant activation of B cell proliferation (mouse)Not determined2116202748122377053Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116235703150235821Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116464410150464554Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
12904007Cfq7_mconditioned fear QTL 7 (mouse)2118526291125206952Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118758772160769245Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118758772160769245Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118758772160769245Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118758772160769245Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1834
Count of miRNA genes:654
Interacting mature miRNAs:800
Transcripts:ENSMUST00000014221, ENSMUST00000119172, ENSMUST00000132448, ENSMUST00000137585, ENSMUST00000154406
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB025217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY268484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000014221   ⟹   ENSMUSP00000014221
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,378,178 - 119,417,508 (+)Ensembl
GRCm38.p6 Ensembl2119,547,697 - 119,587,027 (+)Ensembl
RefSeq Acc Id: ENSMUST00000119172   ⟹   ENSMUSP00000114013
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,378,202 - 119,417,496 (+)Ensembl
GRCm38.p6 Ensembl2119,547,721 - 119,587,015 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132448   ⟹   ENSMUSP00000122946
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,389,993 - 119,402,376 (+)Ensembl
GRCm38.p6 Ensembl2119,559,512 - 119,571,895 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137585
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,397,086 - 119,415,886 (+)Ensembl
GRCm38.p6 Ensembl2119,566,605 - 119,585,405 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154406
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2119,378,293 - 119,402,531 (+)Ensembl
GRCm38.p6 Ensembl2119,547,812 - 119,572,050 (+)Ensembl
RefSeq Acc Id: NM_019769   ⟹   NP_062743
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392119,378,188 - 119,417,505 (+)NCBI
GRCm382119,547,707 - 119,587,024 (+)ENTREZGENE
MGSCv372119,373,443 - 119,412,760 (+)RGD
Celera2120,700,969 - 120,740,985 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036162411   ⟹   XP_036018304
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392119,378,172 - 119,417,505 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_062743   ⟸   NM_019769
- UniProtKB: P61022 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000114013   ⟸   ENSMUST00000119172
RefSeq Acc Id: ENSMUSP00000122946   ⟸   ENSMUST00000132448
RefSeq Acc Id: ENSMUSP00000014221   ⟸   ENSMUST00000014221
RefSeq Acc Id: XP_036018304   ⟸   XM_036162411
- Peptide Label: isoform X1
Protein Domains
EF-hand

Promoters
RGD ID:6832431
Promoter ID:MM_KWN:31242
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000037896,   OTTMUST00000037900,   OTTMUST00000037912,   OTTMUST00000037913,   UC008LTV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362119,372,851 - 119,374,002 (+)MPROMDB
RGD ID:6832423
Promoter ID:MM_KWN:31243
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000037898
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362119,384,616 - 119,385,116 (+)MPROMDB
RGD ID:6832425
Promoter ID:MM_KWN:31244
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000037899
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362119,391,941 - 119,392,441 (+)MPROMDB
RGD ID:6878362
Promoter ID:EPDNEW_M2632
Type:initiation region
Name:Chp1_1
Description:Mus musculus calcineurin-like EF hand protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382119,547,793 - 119,547,853EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927185 AgrOrtholog
Ensembl Genes ENSMUSG00000014077 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000014221 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114013 UniProtKB/TrEMBL
  ENSMUSP00000122946 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000014221 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000119172 UniProtKB/TrEMBL
  ENSMUST00000132448 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56398 UniProtKB/Swiss-Prot
MGD MGI:1927185 ENTREZGENE
NCBI Gene 56398 ENTREZGENE
Pfam EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chp1 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B0R091_MOUSE UniProtKB/TrEMBL
  B0R092_MOUSE UniProtKB/TrEMBL
  CHP1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q62877 UniProtKB/Swiss-Prot
  Q6ZWQ8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Chp1  calcineurin-like EF hand protein 1  1500003O03Rik  RIKEN cDNA 1500003O03 gene  Symbol and/or name change 5135510 APPROVED