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Gene: Ssbp1 (single-stranded DNA binding protein 1) Mus musculus

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Symbol:

Ssbp1

Name:

single-stranded DNA binding protein 1

RGD ID:

736465

MGI Page

MGI

Description:

Predicted to enable several functions, including chromatin binding activity; protein homodimerization activity; and single-stranded DNA binding activity. Acts upstream of or within mitochondrion organization. Located in mitochondrion. Is expressed in brain ventricular layer; foregut; renal cortex; and submandibular gland primordium. Human ortholog(s) of this gene implicated in optic atrophy. Orthologous to human SSBP1 (single stranded DNA binding protein 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2810480P10Rik; G630031O20Rik; mt-SSB; mtDB; mtDBP; MtSSB; single-stranded DNA-binding protein, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SSBP1 (single stranded DNA binding protein 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Ssbp1 (single stranded DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ssbp1 (single stranded DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SSBP1 (single stranded DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SSBP1 (single stranded DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ssbp1 (single stranded DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SSBP1 (single stranded DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SSBP1 (single stranded DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ssbp1 (single stranded DNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Ssbp1 (single stranded DNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SSBP1 (single stranded DNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ssbp1 (single-stranded DNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	mtss-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	mtSSB	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RIM1	Alliance	DIOPT (OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ssbp1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	40,448,302 - 40,458,757 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	40,448,286 - 40,461,634 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	40,471,414 - 40,481,823 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	40,471,352 - 40,484,700 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	40,421,414 - 40,431,822 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	40,401,022 - 40,411,430 (+)	NCBI		MGSCv36	mm8
Celera	6	40,458,830 - 40,469,238 (+)	NCBI		Celera
Cytogenetic Map	6	B1	NCBI
cM Map	6	18.82	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Arsenic Poisoning (ISO)

cone-rod dystrophy (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Hereditary Pancreatitis (ISO)

optic atrophy (ISO)

Optic Atrophy 13 (ISO)

RASopathy (ISO)

Sengers syndrome (ISO)

skin disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

2,6-dimethoxyphenol (ISO)

3H-1,2-dithiole-3-thione (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

beauvericin (ISO)

benzo[a]pyrene (EXP)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

carbon nanotube (EXP)

CGP 52608 (ISO)

chloropicrin (ISO)

chromium(6+) (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

corosolic acid (ISO)

crocidolite asbestos (EXP)

cycloheximide (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dimethyl fumarate (EXP)

disodium selenite (ISO)

diuron (ISO)

dopamine (ISO)

doxorubicin (ISO)

enalapril (ISO)

enniatin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

finasteride (ISO)

flutamide (ISO)

folic acid (EXP)

furfural (ISO)

gentamycin (ISO)

ivermectin (ISO)

lead diacetate (EXP)

lipopolysaccharide (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methapyrilene (ISO)

Methylazoxymethanol acetate (ISO)

methylmercury chloride (EXP,ISO)

methylparaben (ISO)

N-methyl-4-phenylpyridinium (ISO)

nefazodone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (EXP)

phenol red (ISO)

pinosylvin (ISO)

pirinixic acid (EXP)

potassium dichromate (EXP)

quercetin (ISO)

rotenone (ISO)

selenomethionine (ISO)

sodium chloride (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (EXP)

trans-pinosylvin (ISO)

triphenyl phosphate (ISO)

triptonide (EXP)

ursodeoxycholic acid (ISO)

valproic acid (ISO)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated DNA replication (ISO)

mitochondrial genome maintenance (IBA)

mitochondrion organization (IMP)

obsolete DNA unwinding involved in DNA replication (IBA,IEA,ISO)

positive regulation of helicase activity (ISO)

positive regulation of mitochondrial DNA replication (IBA,ISO,ISS)

protein homotetramerization (ISO,ISS)

Cellular Component

mitochondrial nucleoid (IBA,ISO,ISS)

mitochondrion (HDA,IDA,ISO)

Molecular Function

chromatin binding (ISO,ISS)

enzyme activator activity (IBA)

identical protein binding (ISO)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

single-stranded DNA binding (IBA,ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

DNA replication pathway (IEA)

homologous recombination pathway of double-strand break repair (IEA)

mismatch repair pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

preweaning lethality, complete penetrance (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11943466	PMID:12381786	PMID:12477932	PMID:12479417	PMID:14610273	PMID:15782199	PMID:16141072	PMID:16141073
PMID:16860483	PMID:18614015	PMID:18799693	PMID:21048415	PMID:21267068	PMID:21677750	PMID:21873635	PMID:22940690	PMID:23459151	PMID:26370502	PMID:26965372	PMID:29097665
PMID:29199018	PMID:30196744	PMID:30369577	PMID:30550785	PMID:30595499	PMID:30973865	PMID:32098917	PMID:32325033	PMID:32581705	PMID:33230847	PMID:34133714	PMID:37839992
PMID:38355793

Genomics

Comparative Map Data

Ssbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	40,448,302 - 40,458,757 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	40,448,286 - 40,461,634 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	40,471,414 - 40,481,823 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	40,471,352 - 40,484,700 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	40,421,414 - 40,431,822 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	40,401,022 - 40,411,430 (+)	NCBI		MGSCv36	mm8
Celera	6	40,458,830 - 40,469,238 (+)	NCBI		Celera
Cytogenetic Map	6	B1	NCBI
cM Map	6	18.82	NCBI

SSBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	141,738,321 - 141,750,488 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	141,738,334 - 141,787,922 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	141,438,121 - 141,450,288 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	141,084,645 - 141,096,726 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	140,891,359 - 140,903,441	NCBI
Celera	7	136,159,808 - 136,171,889 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI
HuRef	7	135,734,891 - 135,746,970 (+)	NCBI		HuRef
CHM1_1	7	141,372,469 - 141,384,636 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	143,054,147 - 143,066,314 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	140,775,840 - 140,788,007 (+)	NCBI

Ssbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	70,232,740 - 70,242,824 (+)	NCBI		GRCr8
mRatBN7.2	4	69,266,024 - 69,276,135 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	69,266,102 - 69,276,135 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	74,194,304 - 74,204,330 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	70,115,458 - 70,125,484 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	68,526,940 - 68,536,969 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	68,634,844 - 68,645,112 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	68,634,929 - 68,645,172 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	133,421,333 - 133,430,764 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	68,027,304 - 68,036,581 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	68,302,749 - 68,312,711 (+)	NCBI
Celera	4	64,269,091 - 64,279,111 (+)	NCBI		Celera
Cytogenetic Map	4	q23	NCBI

Ssbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955494	1,814,106 - 1,826,375 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955494	1,807,885 - 1,826,375 (-)	NCBI	ChiLan1.0	ChiLan1.0

SSBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	178,524,904 - 178,539,330 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	30,535,126 - 30,549,585 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	133,670,085 - 133,682,228 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	146,139,837 - 146,151,495 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	146,139,837 - 146,151,495 (+)	Ensembl	panpan1.1		panPan2

SSBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	7,445,351 - 7,461,513 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	7,451,444 - 7,461,464 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	8,296,558 - 8,306,117 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	7,366,951 - 7,383,090 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	7,372,962 - 7,383,068 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	7,326,794 - 7,336,352 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	7,169,166 - 7,178,723 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	7,236,927 - 7,246,487 (-)	NCBI		UU_Cfam_GSD_1.0

Ssbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	13,579,280 - 13,608,032 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936592	5,614,619 - 5,619,627 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936592	5,611,775 - 5,620,846 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SSBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	8,151,029 - 8,167,983 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	8,084,292 - 8,167,983 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	8,443,269 - 8,460,494 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SSBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	110,492,340 - 110,504,176 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	110,492,377 - 110,504,177 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666072	7,170,863 - 7,182,714 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ssbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	21,746,794 - 21,761,258 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624765	21,746,633 - 21,771,234 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ssbp1
590 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	571
Count of miRNA genes:	364
Interacting mature miRNAs:	410
Transcripts:	ENSMUST00000031971, ENSMUST00000114779, ENSMUST00000117411, ENSMUST00000117830, ENSMUST00000121360, ENSMUST00000141801
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96633110	Mouse
4140989	Spqq2_m	sperm quality QTL 2 (mouse)			Not determined			17711598	51711719	Mouse
26884441	Sklq3_m	skull length QTL 3, 5 week (mouse)					6	7600000	80576983	Mouse
1357520	Axtq2_m	anxiety QTL 2 (mouse)			Not determined		6	4503823	48703611	Mouse
10043869	Cia6a_m	collagen induced arthritis QTL 6a (mouse)			Not determined		6	12117971	46118069	Mouse
11252142	Mom12_m	Modifier of Min 12 (mouse)					6	33872261	67872400	Mouse
1301850	Fglu_m	fasting glucose (mouse)			Not determined		6	17711598	51711719	Mouse
4141749	Obrq2_m	obesity resistance QTL 2 (mouse)			Not determined			12751221	46751333	Mouse
1300959	Lxw2_m	lupus BXSB x NZW 2 (mouse)			Not determined		6	33872261	67872400	Mouse
1300767	Aliq4_m	acute lung injury QTL 4 (mouse)			Not determined		6	36273332	70273435	Mouse
1301724	Pcd4ts1_m	p-glycoprotein positive CD4 T cell subset 1 (mouse)			Not determined		6	17711598	51711719	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96633110	Mouse
14746995	Manh60_m	mandible shape 60 (mouse)					6	37202662	71202662	Mouse
10412107	Desp4_m	despair 4 (mouse)			Not determined		6	20049830	54049830	Mouse
1357442	Dbts1_m	diabetes 1 (mouse)			Not determined		6	18234147	73364675	Mouse
4141094	Hrtr1_m	heart rate 1 (mouse)			Not determined			36741463	70741463	Mouse
4141988	Obrq3_m	obesity resistance QTL 3 (mouse)			Not determined			28290993	62291115	Mouse
11353841	Bmiq3_m	body mass index QTL 3 (mouse)					6	4503823	48703611	Mouse
11353840	Bmiq2_m	body mass index QTL 2 (mouse)					6	4503823	45291115	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38646560	92584431	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87403016	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139076998	Mouse
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	3050001	117476961	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96633110	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96633110	Mouse
12904940	Edlmmq5_m	extensor digitorum longus muscle mass QTL 5 (mouse)					6	19616346	53616346	Mouse
4141782	Mrdq5_m	modifier of retinal degeneration QTL 5 (mouse)			Not determined			32827585	78215957	Mouse
10412213	Sxbq2_m	SGC/Knj cross B6 QTL 2 (mouse)			Not determined		6	19912685	71299759	Mouse
12904943	Tammq4_m	tibialis anterior muscle mass QTL 4 (mouse)					6	19616346	53616346	Mouse
12880425	V25Dq5_m	vitamin D inactive form serum level QTL 5 (mouse)					6	32676980	66676980	Mouse
1302051	Sluc7_m	susceptibility to lung cancer 7 (mouse)			Not determined		6	9297074	43297168	Mouse
4141454	Obrq4_m	obesity resistance QTL 4 (mouse)			Not determined			31703499	65703611	Mouse
14700690	Ccs6_m	colon cancer susceptibility 6 (mouse)					6	23776934	57776934	Mouse
1357539	Bsbob3_m	BSB obesity 3 (mouse)			Not determined		6	36448456	70448576	Mouse
27226726	Tibmd7_m	tibia midshaft diameter 7, 16 week (mouse)					6	17699999	53476985	Mouse
12904952	Gmmq4_m	gastrocnemius muscle mass QTL 4 (mouse)					6	19616346	53616346	Mouse
1301998	Bts2_m	bladder tumor susceptibility 2 (mouse)			Not determined		6	12751221	46751333	Mouse
1357481	Aaj2_m	anxiety in A/J 2 (mouse)			Not determined		6	4503823	48703611	Mouse
13208564	Bmiq7_m	body mass index QTL 7 (mouse)					6	24999999	79976983	Mouse

Markers in Region

Ssb

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	33,172,961 - 33,173,167	UniSTS	GRCm38
MGSCv37	11	33,072,961 - 33,073,167	UniSTS	GRCm37
Celera	11	35,585,230 - 35,585,436	UniSTS
Cytogenetic Map	11	A4	UniSTS
Cytogenetic Map	6	B2	UniSTS
Cytogenetic Map	2	C2	UniSTS
cM Map	2	41.0	UniSTS
cM Map	2	41.0	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001286663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001364578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_028358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_212468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006506329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017321664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC155653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI509168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK090242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK090272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK187390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC028648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC060290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000031971 ⟹ ENSMUSP00000031971

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	40,448,349 - 40,455,521 (+)	Ensembl
GRCm38.p6 Ensembl	6	40,471,415 - 40,478,587 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000114779 ⟹ ENSMUSP00000110427

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	40,448,286 - 40,461,634 (+)	Ensembl
GRCm38.p6 Ensembl	6	40,471,352 - 40,484,700 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000117411 ⟹ ENSMUSP00000114082

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	40,448,409 - 40,457,926 (+)	Ensembl
GRCm38.p6 Ensembl	6	40,471,475 - 40,480,992 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000117830 ⟹ ENSMUSP00000113815

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	40,448,460 - 40,453,445 (+)	Ensembl
GRCm38.p6 Ensembl	6	40,471,526 - 40,476,511 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000121360 ⟹ ENSMUSP00000113563

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	40,448,402 - 40,457,929 (+)	Ensembl
GRCm38.p6 Ensembl	6	40,471,468 - 40,480,995 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000141801

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	40,453,413 - 40,454,384 (+)	Ensembl
GRCm38.p6 Ensembl	6	40,476,479 - 40,477,450 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000201570

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	40,448,387 - 40,451,223 (+)	Ensembl
GRCm38.p6 Ensembl	6	40,471,453 - 40,474,289 (+)	Ensembl

RefSeq Acc Id:

NM_001286663 ⟹ NP_001273592

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	40,448,402 - 40,458,757 (+)	NCBI
GRCm38	6	40,471,468 - 40,481,823 (+)	NCBI
Celera	6	40,458,830 - 40,469,238 (+)	NCBI

Sequence:

show sequence

GGGGAGAAGGCTGGCACGAAGTTGTGTTTCCCGAGTGCACGGGCGCGTGCGGGGCTCGGGAGGA
GTTGTGCGGCTCCTCGCTGGAGTCCGAGTGTCCCCCGCCGTTCCCTGTGCTGCTCGCGAGCGCC
ACTTTGGGGGAAGAGCAGCCTCTTGCCCCCGCGGCGAGGCTGGGGAGCCGGGCTTACTCAGCGC
TAACGGGGACGAAGGCACTGATTTGCGTCCTTTCGGAGTAGCGTTTACTGTGCCCGCACTGTTT
GTAGAGACAGTTTTAGGGGTCTAGAATAACAGAACAAGTTGGAAAAAAAAATGTCCGAGACAAC
TTCTATTGTAAAGAAATCTAGCAGACAATGGATTGCAAGTGAGAACAGGTTTTTCCCCTCTTTT
CTGCTGGTTGAGACCCAGAACCACAGAGTTTCTTTTGTCTCGCTCAGTTTTTGTTTTCAAAAAG
AAAGGAACTCCCCACACGTGCAAAAAATGCGGTTGCAAATTGGGTGCACGAGAAGCTGGACGCG
CTTAGGATTTAGGACTAGAGAGCATGTGTGTTCTTGATGGATACTGTAGTTTCTTGATTTATCA
TTTTTCTCTTTTCTTTCTTTCCTTTAGGAAAAGCCTAAAGATTAGGTTGTAAGAAAAACAGAAG
CCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAGC
CAGCAGTTTGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGAC
CCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGCAACAAATGAGA
TGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGACGTTAGTCAGAAGACGACGTGGCA
CAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGGCT
CGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATAAAAACAATGTGAGGCGGC
AAGCAACAACAATCATAGCTGATAACATTATATTTCTGAGTGACCAGACAAAAGAAAAGGCATA
GAACGGATGATTCGTCTTTGATCATTGTTTGGTACAGTCTCCTTTGCAAATCATGTATAGTCTA
TAGTTTAAAGATAAAAATTAAATTTTTTATATGAAATGAGTGGTTATATTTTTCTTGATTGACA
TATCTTAAGTGTGTGTGTGTGTGTGTGTGTATTAAGCCTGTCATTTTGGCACTTATCAATTGCT
TGCTTTTTTTTAGGAGTGGTTTCTCTGTAGAAAGGTACAAAGTAATACATTCTCAGGCTCCCTA
TGTGTGCCAGGGCCAAGGCATACATCTGGAAAGCCCTTTCTGCTTCACACTTGCCCTGTGGTGT
TTCACCACTGGTTACCTTAGAGCCTTATGTCAAGAGTCTGTCTGTCATCGTTGTAAACACTGAT
GTTTTTGCATATCTCTGTACACCTGTAGGTAAGTAGTGACTCTGTTTGGTGTTCCTGTATGTAC
CTTTAGTTGTGTTGGCATGGAAGAGCCACCAGTAAGTGCTGACAGGGAAATGATCCTGAATTGA
AGGAGACTGCTGAACACTGGTTAGCATTCTAAACTGTTGTAGAATTAACCCACCTTCATATCTT
GTTTCTTGTTAGTTTTCCTGTAATTTTTATGAGATTTTATCAGCACTAAGGACCTGAATGAAGT
ATAACTACAGATGACATAGTTCTTGTCCTGGTGTCAAGGCCTTCTTTCCACACCACTCTGTGTT
ATTTTTTTCAGAGTTTATTCTATATGCTTAAGGGTGGAAATGAAGATCTTTCTCTGGTGCTCGG
GATTAAACCTATGGTCATGTTAGGCAGGCCGTCTCCCGTTGAGCTGTACCTACTTCAAAGATCT
TTTACCTTCGACTTTGCCTCCCTAGAGAGTCTGGATATATTTAGTTAATTTTGTTGTAAATTTA
CTAGTAATTTACCAATAAAGAGTATATAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001364578 ⟹ NP_001351507

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	40,448,402 - 40,458,757 (+)	NCBI
GRCm38	6	40,471,468 - 40,481,823 (+)	NCBI

Sequence:

show sequence

GGGGAGAAGGCTGGCACGAAGTTGTGTTTCCCGAGTGCACGGGCGCGTGCGGGGCTCGGGAGGA
GTTGTGCGGCTCCTCGCTGGAGTCCGAGTGTCCCCCGCCGTTCCCTGTGCTGCTCGCGAGCGCC
ACTTTGGGGGAAGAGCAGCCTCTTGCCCCCGCGGCGAGGCTGGGGAGCCGGGCTTACTCAGCGC
TAACGGGGACGAAGGCACTGATTTGCGTCCTTTCGGAGTAGCGTTTACTGTGCCCGCACTGTTT
GTAGAGACAGTTTTAGGGGTCTAGAATAACAGAACAAGTTGGAAAAAAAAATGTCCGAGACAAC
TTCTATTGTAAAGAAATCTAGCAGACAATGGATTGCAAGAAAAGCCTAAAGATTAGGTTGTAAG
AAAAACAGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGAG
TCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTTGGACGAG
TAGGTCAGGACCCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGC
AACAAATGAGATGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGACGTTAGTCAGAAG
ACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAGTATGTGA
AAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATAAAAACAA
TGTGAGGCGGCAAGCAACAACAATCATAGCTGATAACATTATATTTCTGAGTGACCAGACAAAA
GAAAAGGCATAGAACGGATGATTCGTCTTTGATCATTGTTTGGTACAGTCTCCTTTGCAAATCA
TGTATAGTCTATAGTTTAAAGATAAAAATTAAATTTTTTATATGAAATGAGTGGTTATATTTTT
CTTGATTGACATATCTTAAGTGTGTGTGTGTGTGTGTGTGTATTAAGCCTGTCATTTTGGCACT
TATCAATTGCTTGCTTTTTTTTAGGAGTGGTTTCTCTGTAGAAAGGTACAAAGTAATACATTCT
CAGGCTCCCTATGTGTGCCAGGGCCAAGGCATACATCTGGAAAGCCCTTTCTGCTTCACACTTG
CCCTGTGGTGTTTCACCACTGGTTACCTTAGAGCCTTATGTCAAGAGTCTGTCTGTCATCGTTG
TAAACACTGATGTTTTTGCATATCTCTGTACACCTGTAGGTAAGTAGTGACTCTGTTTGGTGTT
CCTGTATGTACCTTTAGTTGTGTTGGCATGGAAGAGCCACCAGTAAGTGCTGACAGGGAAATGA
TCCTGAATTGAAGGAGACTGCTGAACACTGGTTAGCATTCTAAACTGTTGTAGAATTAACCCAC
CTTCATATCTTGTTTCTTGTTAGTTTTCCTGTAATTTTTATGAGATTTTATCAGCACTAAGGAC
CTGAATGAAGTATAACTACAGATGACATAGTTCTTGTCCTGGTGTCAAGGCCTTCTTTCCACAC
CACTCTGTGTTATTTTTTTCAGAGTTTATTCTATATGCTTAAGGGTGGAAATGAAGATCTTTCT
CTGGTGCTCGGGATTAAACCTATGGTCATGTTAGGCAGGCCGTCTCCCGTTGAGCTGTACCTAC
TTCAAAGATCTTTTACCTTCGACTTTGCCTCCCTAGAGAGTCTGGATATATTTAGTTAATTTTG
TTGTAAATTTACTAGTAATTTACCAATAAAGAGTATATAAACT

hide sequence

RefSeq Acc Id:

NM_028358 ⟹ NP_082634

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	40,448,349 - 40,455,521 (+)	NCBI
GRCm38	6	40,471,415 - 40,478,587 (+)	NCBI
MGSCv37	6	40,421,414 - 40,431,822 (+)	RGD
Celera	6	40,458,830 - 40,469,238 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

CGTGCGCCGGAAGCGAGCCGCTGGCGGTCGGGCTCTGCGTGTCCGGAAAAGCCTAAAGATTAGG
TTGTAAGAAAAACAGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAG
ACATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTT
GGACGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTT
CTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGACGTTAG
TCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAG
TATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATA
AAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGGTAAGAAGCTCGTGGTGCACAGTGT
CTCTGGTTGTTCATTGGAAGGGTTGGCGTAGTATAGGCCGCTTTTGCTGGCCTCTAAGCACCCT
GATGGCAGCTCTGCAGGAAACTCCCCAGGGGACTTCGTCCTGTTCCTTTTCCTGTGTGCTAATG
TTGTCCACATTTATTTATTCCTTTAAAAGGCTCTCTGTCTACTCACATGTTTAGTTCAGGGGGA
CTCTGTGGGGTATGAAAGCAACTTGCCCCTGCAGTACATACTGTTAACTTGGAGAATTGAATCT
TGGTGTATACTCGGGCAGTTGCAGAACTGTGATGGTAGGAATTTGTGATGTATTCAAAACTTTG
AAAGTGAAGGTGCAACAGCCTTCATTTGAAATTTAAAAACTTTTGTCTAAAAACAATATAGCTG
TTTATGTATCTGTAACTTAAATGCTTTTTTTTACTCAAATTATATGTAGATTAATGAAATATAG
ATGCCTTACCAATTTAATGCCATTTTTTAAGAGTACCTGCTTAACAGATTTTAATATGTTAATG
TGAAAATTAAAATGCTATTAAAATTCATCTTTTAATGAG

hide sequence

RefSeq Acc Id:

NM_212468 ⟹ NP_997633

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	40,448,349 - 40,458,757 (+)	NCBI
GRCm38	6	40,471,415 - 40,481,823 (+)	NCBI
MGSCv37	6	40,421,414 - 40,431,822 (+)	RGD
Celera	6	40,458,830 - 40,469,238 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

CGTGCGCCGGAAGCGAGCCGCTGGCGGTCGGGCTCTGCGTGTCCGGAAAAGCCTAAAGATTAGG
TTGTAAGAAAAACAGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAG
ACATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTT
GGACGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTT
CTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGACGTTAG
TCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAG
TATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATA
AAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGATAACATTATATTTCTGAGTGACCA
GACAAAAGAAAAGGCATAGAACGGATGATTCGTCTTTGATCATTGTTTGGTACAGTCTCCTTTG
CAAATCATGTATAGTCTATAGTTTAAAGATAAAAATTAAATTTTTTATATGAAATGAGTGGTTA
TATTTTTCTTGATTGACATATCTTAAGTGTGTGTGTGTGTGTGTGTGTATTAAGCCTGTCATTT
TGGCACTTATCAATTGCTTGCTTTTTTTTAGGAGTGGTTTCTCTGTAGAAAGGTACAAAGTAAT
ACATTCTCAGGCTCCCTATGTGTGCCAGGGCCAAGGCATACATCTGGAAAGCCCTTTCTGCTTC
ACACTTGCCCTGTGGTGTTTCACCACTGGTTACCTTAGAGCCTTATGTCAAGAGTCTGTCTGTC
ATCGTTGTAAACACTGATGTTTTTGCATATCTCTGTACACCTGTAGGTAAGTAGTGACTCTGTT
TGGTGTTCCTGTATGTACCTTTAGTTGTGTTGGCATGGAAGAGCCACCAGTAAGTGCTGACAGG
GAAATGATCCTGAATTGAAGGAGACTGCTGAACACTGGTTAGCATTCTAAACTGTTGTAGAATT
AACCCACCTTCATATCTTGTTTCTTGTTAGTTTTCCTGTAATTTTTATGAGATTTTATCAGCAC
TAAGGACCTGAATGAAGTATAACTACAGATGACATAGTTCTTGTCCTGGTGTCAAGGCCTTCTT
TCCACACCACTCTGTGTTATTTTTTTCAGAGTTTATTCTATATGCTTAAGGGTGGAAATGAAGA
TCTTTCTCTGGTGCTCGGGATTAAACCTATGGTCATGTTAGGCAGGCCGTCTCCCGTTGAGCTG
TACCTACTTCAAAGATCTTTTACCTTCGACTTTGCCTCCCTAGAGAGTCTGGATATATTTAGTT
AATTTTGTTGTAAATTTACTAGTAATTTACCAATAAAGAGTATATAAACTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006506329 ⟹ XP_006506392

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	40,448,348 - 40,455,522 (+)	NCBI
GRCm38	6	40,471,414 - 40,478,588 (+)	NCBI

Sequence:

show sequence

CCGTGCGCCGGAAGCGAGCCGCTGGCGGTCGGGCTCTGCGTGTCCGGTGAGGGAGGGGAGAAGG
CTGGCACGAAGTTGTGTTTCCCGAGTGCACGGGCGCGTGCGGGGCTCGGGAGGAGTTGTGCGGC
TCCTCGCTGGAGTCCGAGTGTCCCCCGCCGTTCCCTGTGCTGCTCGCGAGCGCCACTTTGGGGG
AAGAGCAGCCTCTTGCCCCCGCGGCGAGGCTGGGGAGCCGGGCTTACTCAGCGCTAACGGGGAC
GAAGGCACTGATTTGCGTCCTTTCGGAGTAGCGTTTACTGTGCCCGCACTGTTTGTAGAGACAG
TTTTAGGGGTCTAGAATAACAGAACAAGTTGGAAAAAAAAATGTCCGAGACAACTTCTATTGTA
AAGAAATCTAGCAGACAATGGATTGCAAGAAAAGCCTAAAGATTAGGTTGTAAGAAAAACAGAA
GCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAG
CCAGCAGTTTGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGA
CCCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGCAACAAATGAG
ATGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGACGTTAGTCAGAAGACGACGTGGC
ACAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGGC
TCGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATAAAAACAATGTGAGGCGG
CAAGCAACAACAATCATAGCTGGTAAGAAGCTCGTGGTGCACAGTGTCTCTGGTTGTTCATTGG
AAGGGTTGGCGTAGTATAGGCCGCTTTTGCTGGCCTCTAAGCACCCTGATGGCAGCTCTGCAGG
AAACTCCCCAGGGGACTTCGTCCTGTTCCTTTTCCTGTGTGCTAATGTTGTCCACATTTATTTA
TTCCTTTAAAAGGCTCTCTGTCTACTCACATGTTTAGTTCAGGGGGACTCTGTGGGGTATGAAA
GCAACTTGCCCCTGCAGTACATACTGTTAACTTGGAGAATTGAATCTTGGTGTATACTCGGGCA
GTTGCAGAACTGTGATGGTAGGAATTTGTGATGTATTCAAAACTTTGAAAGTGAAGGTGCAACA
GCCTTCATTTGAAATTTAAAAACTTTTGTCTAAAAACAATATAGCTGTTTATGTATCTGTAACT
TAAATGCTTTTTTTTACTCAAATTATATGTAGATTAATGAAATATAGATGCCTTACCAATTTAA
TGCCATTTTTTAAGAGTACCTGCTTAACAGATTTTAATATGTTAATGTGAAAATTAAAATGCTA
TTAAAATTCATCTTTTAATGAGA

hide sequence

RefSeq Acc Id:

XM_017321664 ⟹ XP_017177153

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	40,448,302 - 40,455,522 (+)	NCBI
GRCm38	6	40,471,414 - 40,478,588 (+)	NCBI

Sequence:

show sequence

TCAGAGATTTCCTGTCTTTCCTTGCATCTCGCGAGCTTTGCGGGCTCCGTGCGCCGGAAGCGAG
CCGCTGGCGGTCGGGCTCTGCGTGTCCGGTGAGGGAGGGGAGAAGGCTGGCACGAAGTTGTGTT
TCCCGAGTGCACGGGCGCGTGCGGGGCTCGGGAGGAGTTGTGCGGCTCCTCGCTGGAGTCCGAG
TGTCCCCCGCCGTTCCCTGTGCTGCTCGCGAGCGCCACTTTGGGGGAAGAGCAGCCTCTTGCCC
CCGCGGCGAGGCTGGGGAGCCGGGCTTACTCAGCGCTAACGGGGACGAAGGCACTGATTTGCGT
CCTTTCGGAGTAGCGTTTACTGTGCCCGCACTGTTTGTAGAGACAGTTTTAGGGGTCTAGAATA
ACAGAACAAGTTGGAAAAAAAAATGTCCGAGACAACTTCTATTGTAAAGAAATCTAGCAGACAA
TGGATTGCAAGTGAGAACAGGTTTTTCCCCTCTTTTCTGCTGGTTGAGACCCAGAACCACAGAG
TTTCTTTTGTCTCGCTCAGTTTTTGTTTTCAAAAAGAAAGGAACTCCCCACACGTGCAAAAAAT
GCGGTTGCAAATTGGGTGCACGAGAAGCTGGACGCGCTTAGGATTTAGGACTAGAGAGCATGTG
TGTTCTTGATGGATACTGTAGTTTCTTGATTTATCATTTTTCTCTTTTCTTTCTTTCCTTTAGG
AAAAGCCTAAAGATTAGGTTGTAAGAAAAACAGAAGCCATGTTTCGAAGACCTGTGTTACAGGT
ATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTCTG
AATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAAGGAAAAA
ACCCAGTCACAATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGTGAAGTATA
CCAAATGGGTGACGTTAGTCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCCTC
AGAGATGTGGCATATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACT
ATGGCGAGTACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGGTAAGAA
GCTCGTGGTGCACAGTGTCTCTGGTTGTTCATTGGAAGGGTTGGCGTAGTATAGGCCGCTTTTG
CTGGCCTCTAAGCACCCTGATGGCAGCTCTGCAGGAAACTCCCCAGGGGACTTCGTCCTGTTCC
TTTTCCTGTGTGCTAATGTTGTCCACATTTATTTATTCCTTTAAAAGGCTCTCTGTCTACTCAC
ATGTTTAGTTCAGGGGGACTCTGTGGGGTATGAAAGCAACTTGCCCCTGCAGTACATACTGTTA
ACTTGGAGAATTGAATCTTGGTGTATACTCGGGCAGTTGCAGAACTGTGATGGTAGGAATTTGT
GATGTATTCAAAACTTTGAAAGTGAAGGTGCAACAGCCTTCATTTGAAATTTAAAAACTTTTGT
CTAAAAACAATATAGCTGTTTATGTATCTGTAACTTAAATGCTTTTTTTTACTCAAATTATATG
TAGATTAATGAAATATAGATGCCTTACCAATTTAATGCCATTTTTTAAGAGTACCTGCTTAACA
GATTTTAATATGTTAATGTGAAAATTAAAATGCTATTAAAATTCATCTTTTAATGAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001273592	(Get FASTA)	NCBI Sequence Viewer
	NP_001351507	(Get FASTA)	NCBI Sequence Viewer
	NP_082634	(Get FASTA)	NCBI Sequence Viewer
	NP_997633	(Get FASTA)	NCBI Sequence Viewer
	XP_006506392	(Get FASTA)	NCBI Sequence Viewer
	XP_017177153	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH28648	(Get FASTA)	NCBI Sequence Viewer
	AAH61183	(Get FASTA)	NCBI Sequence Viewer
	BAB28850	(Get FASTA)	NCBI Sequence Viewer
	EDL13578	(Get FASTA)	NCBI Sequence Viewer
	EDL13579	(Get FASTA)	NCBI Sequence Viewer
	EDL13580	(Get FASTA)	NCBI Sequence Viewer
	EDL13581	(Get FASTA)	NCBI Sequence Viewer
	EDL13582	(Get FASTA)	NCBI Sequence Viewer
	EDL13583	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000031971
	ENSMUSP00000031971.7
	ENSMUSP00000110427
	ENSMUSP00000110427.3
	ENSMUSP00000113563
	ENSMUSP00000113563.2
	ENSMUSP00000113815.2
	ENSMUSP00000114082
	ENSMUSP00000114082.2
GenBank Protein	Q9CYR0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_997633 ⟸ NM_212468
- Peptide Label:	isoform 1
- UniProtKB:	Q8R2K3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRPVLQVFRQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEM WRSGDSEVYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQ ATTIIADNIIFLSDQTKEKA hide sequence

RefSeq Acc Id:	NP_082634 ⟸ NM_028358
- Peptide Label:	isoform 2
- UniProtKB:	Q9CYR0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFRRPVLQVFRQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEM WRSGDSEVYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQ ATTIIAGKKLVVHSVSGCSLEGLA hide sequence

RefSeq Acc Id:	NP_001273592 ⟸ NM_001286663
- Peptide Label:	isoform 1
- UniProtKB:	Q8R2K3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRRPVLQVFRQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEM WRSGDSEVYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQ ATTIIADNIIFLSDQTKEKA hide sequence

RefSeq Acc Id:	XP_006506392 ⟸ XM_006506329
- Peptide Label:	isoform X1
- UniProtKB:	Q9CYR0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFRRPVLQVFRQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEM WRSGDSEVYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQ ATTIIAGKKLVVHSVSGCSLEGLA hide sequence

RefSeq Acc Id:	XP_017177153 ⟸ XM_017321664
- Peptide Label:	isoform X1
- UniProtKB:	Q9CYR0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFRRPVLQVFRQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEM WRSGDSEVYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQ ATTIIAGKKLVVHSVSGCSLEGLA hide sequence

RefSeq Acc Id:	NP_001351507 ⟸ NM_001364578
- Peptide Label:	isoform 1
- UniProtKB:	Q8R2K3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSMUSP00000031971 ⟸ ENSMUST00000031971

Ensembl Acc Id:

ENSMUSP00000113563 ⟸ ENSMUST00000121360

Ensembl Acc Id:

ENSMUSP00000110427 ⟸ ENSMUST00000114779

Ensembl Acc Id:

ENSMUSP00000114082 ⟸ ENSMUST00000117411

Ensembl Acc Id:

ENSMUSP00000113815 ⟸ ENSMUST00000117830

Protein Domains

SSB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9CYR0-F1-model_v2	AlphaFold	Q9CYR0	1-152	view protein structure

Promoters

RGD ID:

6840034

Promoter ID:

MM_KWN:45683

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

AK020926_A930033M24RIK, ENSMUST00000117830, NM_028358, OTTMUST00000066538, UC009BMT.1, UC009BMU.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	40,421,331 - 40,422,542 (+)	MPROMDB

RGD ID:

6889422

Promoter ID:

EPDNEW_M8162

Type:

initiation region

Name:

Ssbp1_1

Description:

Mus musculus single-stranded DNA binding protein 1 , transcriptvariant 4, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	40,471,420 - 40,471,480	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1920040	AgrOrtholog
Ensembl Genes	ENSMUSG00000029911	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000031971	ENTREZGENE
	ENSMUST00000031971.13	UniProtKB/Swiss-Prot
	ENSMUST00000114779	ENTREZGENE
	ENSMUST00000114779.9	UniProtKB/TrEMBL
	ENSMUST00000117411	ENTREZGENE
	ENSMUST00000117411.8	UniProtKB/TrEMBL
	ENSMUST00000117830.2	UniProtKB/TrEMBL
	ENSMUST00000121360	ENTREZGENE
	ENSMUST00000121360.8	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	NA-bd_OB-fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Primosome_PriB/ssb	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ssDNA-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:381760	UniProtKB/Swiss-Prot
MGD	MGI:1920040	ENTREZGENE
NCBI Gene	Ssbp1	ENTREZGENE
PANTHER	PTHR10302	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	SSB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ssbp1	PhenoGen
PIRSF	SSB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	SSB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	D3Z3Y3_MOUSE	UniProtKB/TrEMBL
	Q8R2K3	ENTREZGENE, UniProtKB/TrEMBL
	Q9CYR0	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Annotations - KEGG (archival)

Mammalian Phenotype