CD24 (CD24 molecule) - Rat Genome Database

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Gene: CD24 (CD24 molecule) Homo sapiens
Analyze
Symbol: CD24
Name: CD24 molecule
RGD ID: 736340
HGNC Page HGNC
Description: Enables protein kinase binding activity and protein tyrosine kinase activator activity. Involved in several processes, including glomerular epithelial cell differentiation; positive regulation of T cell activation; and positive regulation of nephron tubule epithelial cell differentiation. Located in cell surface; intracellular membrane-bounded organelle; and membrane raft. Implicated in multiple sclerosis.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: cd24 antigen; CD24 antigen (small cell lung carcinoma cluster 4 antigen); CD24A; FLJ22950; FLJ43543; MGC75043; signal transducer CD24; small cell lung carcinoma cluster 4 antigen
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: CD24P1   CD24P2   CD24P3   CD24P4  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6106,969,831 - 106,975,627 (-)EnsemblGRCh38hg38GRCh38
GRCh386106,969,831 - 106,976,855 (-)NCBIGRCh38GRCh38hg38GRCh38
Build 36621,152,527 - 21,154,705NCBINCBI36hg18NCBI36
Build 34Y19,540,683 - 19,542,776NCBI
CeleraY6,620,552 - 6,622,554 (+)NCBI
Cytogenetic Map6q21NCBI
HuRef6104,864,115 - 104,868,879 (-)NCBIHuRef
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (EXP,ISO)
afimoxifene  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
ammonium chloride  (ISO)
antimycin A  (EXP)
antirheumatic drug  (EXP)
aristolochic acid  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
azoxystrobin  (EXP)
bacitracin  (ISO)
belinostat  (EXP)
benzo[a]pyrene  (EXP,ISO)
beta-D-glucosamine  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
butanal  (EXP)
calcitriol  (EXP)
carbamazepine  (EXP)
carbon nanotube  (ISO)
casticin  (EXP)
chloropicrin  (EXP)
choline  (ISO)
chromium atom  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
Cuprizon  (ISO)
cyproconazole  (ISO)
Deguelin  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (EXP)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (EXP)
eugenol  (EXP)
fenpyroximate  (EXP)
fenvalerate  (ISO)
folic acid  (ISO)
fulvestrant  (EXP)
furan  (ISO)
genistein  (ISO)
griseofulvin  (ISO)
hexachlorobenzene  (ISO)
indole-3-methanol  (ISO)
isobutanol  (EXP)
ketamine  (ISO)
L-ascorbic acid  (EXP)
L-methionine  (ISO)
lapatinib  (EXP)
methotrexate  (EXP)
methoxychlor  (ISO)
methylmercury chloride  (EXP)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (EXP)
ochratoxin A  (EXP)
orphenadrine  (ISO)
oxaliplatin  (EXP,ISO)
ozone  (ISO)
paclitaxel  (EXP)
panobinostat  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP,ISO)
PhIP  (ISO)
picoxystrobin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (EXP)
progesterone  (EXP)
pyrimidifen  (EXP)
quercetin  (EXP)
raloxifene  (EXP)
resveratrol  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
sarin  (EXP)
SB 431542  (EXP)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
simvastatin  (EXP)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
streptozocin  (ISO)
succimer  (ISO)
sulforaphane  (EXP)
T-2 toxin  (EXP)
tamoxifen  (ISO)
tebufenpyrad  (EXP)
temozolomide  (EXP)
tert-butyl hydroperoxide  (EXP)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thalidomide  (ISO)
thifluzamide  (EXP)
thioacetamide  (ISO)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP,ISO)
Trapidil  (ISO)
trichostatin A  (EXP)
triclosan  (EXP)
Triptolide  (EXP)
tunicamycin  (EXP)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic mitochondrial changes  (ISO)
apoptotic nuclear changes  (ISO)
apoptotic signaling pathway  (ISO)
B cell receptor transport into membrane raft  (IDA)
cell activation  (IDA)
cell adhesion  (IEA)
cell migration  (ISS)
cell surface receptor signaling pathway  (ISO)
cell-cell adhesion  (NAS)
chemokine receptor transport out of membrane raft  (ISS)
cholesterol homeostasis  (ISS)
glomerular parietal epithelial cell differentiation  (IMP)
glomerular visceral epithelial cell differentiation  (IMP)
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  (ISO)
homotypic cell-cell adhesion  (ISO)
immune response  (IEA,ISO)
immune response-regulating cell surface receptor signaling pathway  (IC)
intrinsic apoptotic signaling pathway  (NAS)
leukocyte cell-cell adhesion  (ISO)
leukocyte migration involved in inflammatory response  (ISO)
negative regulation of B cell proliferation  (ISO)
negative regulation of erythrocyte aggregation  (ISO)
negative regulation of erythrocyte clearance  (ISO)
negative regulation of inflammatory response to wounding  (ISO)
negative regulation of interleukin-6 production  (ISO)
negative regulation of monocyte chemotactic protein-1 production  (ISO)
negative regulation of neuroblast proliferation  (ISO)
negative regulation of neurogenesis  (ISO)
negative regulation of neuron differentiation  (ISO)
negative regulation of T cell homeostatic proliferation  (ISO)
negative regulation of transforming growth factor beta3 production  (IMP)
negative regulation of tumor necrosis factor production  (ISO)
neuromuscular synaptic transmission  (ISO)
neuron projection development  (ISO)
positive regulation of activated T cell proliferation  (IDA)
positive regulation of alpha-beta T cell proliferation  (ISO)
positive regulation of B cell apoptotic process  (ISO)
positive regulation of calcium-mediated signaling  (ISO)
positive regulation of cell adhesion mediated by integrin  (ISO)
positive regulation of cell-cell adhesion  (ISO)
positive regulation of cell-cell adhesion mediated by integrin  (ISO)
positive regulation of cytosolic calcium ion concentration  (IDA)
positive regulation of inflammatory response to antigenic stimulus  (ISO)
positive regulation of inflammatory response to wounding  (ISO)
positive regulation of integrin activation  (ISO)
positive regulation of MAP kinase activity  (IDA)
positive regulation of nephron tubule epithelial cell differentiation  (IMP)
positive regulation of neuron projection development  (ISO)
positive regulation of peptidyl-tyrosine phosphorylation  (ISO)
positive regulation of protein tyrosine kinase activity  (IEA)
positive regulation of T cell homeostatic proliferation  (ISO)
positive regulation of T cell mediated immune response to tumor cell  (ISO)
pre-B cell differentiation  (ISO)
regulation of B cell differentiation  (ISO)
regulation of cell-cell adhesion  (ISO)
regulation of cell-cell adhesion mediated by integrin  (ISO)
regulation of cytokine-mediated signaling pathway  (ISS)
regulation of epithelial cell differentiation  (NAS)
regulation of MAPK cascade  (IDA)
regulation of phosphorylation  (IDA)
respiratory burst  (IDA)
response to estrogen  (IEP)
response to hypoxia  (IEP)
response to molecule of bacterial origin  (ISS)
synaptic vesicle endocytosis  (ISO)
T cell costimulation  (IDA)
Wnt signaling pathway  (NAS)

Molecular Function

References

Additional References at PubMed
PMID:1327504   PMID:1831224   PMID:2153173   PMID:7553654   PMID:7736776   PMID:7959762   PMID:8213086   PMID:8223854   PMID:8753773   PMID:8928617   PMID:9129046   PMID:10037815  
PMID:10575223   PMID:11272271   PMID:11313396   PMID:12218294   PMID:12368195   PMID:12447971   PMID:12477932   PMID:12496407   PMID:12610508   PMID:12829373   PMID:14702039   PMID:15174142  
PMID:15489334   PMID:15493995   PMID:15616015   PMID:15633604   PMID:16125303   PMID:16164042   PMID:16166435   PMID:16288985   PMID:16344560   PMID:16390867   PMID:16532032   PMID:16606832  
PMID:16621031   PMID:16631259   PMID:16681720   PMID:16769998   PMID:16885410   PMID:16890615   PMID:16892043   PMID:16900767   PMID:16930538   PMID:17411341   PMID:17475624   PMID:17540049  
PMID:17700640   PMID:17763438   PMID:17900673   PMID:17944116   PMID:17950993   PMID:17980703   PMID:18381780   PMID:18384848   PMID:18404683   PMID:18413748   PMID:18417991   PMID:18495204  
PMID:18559090   PMID:18566397   PMID:18632604   PMID:18752058   PMID:19043399   PMID:19050962   PMID:19072375   PMID:19092120   PMID:19130400   PMID:19243896   PMID:19264983   PMID:19610054  
PMID:19706825   PMID:19725119   PMID:19786366   PMID:19787233   PMID:19794958   PMID:19860845   PMID:19896210   PMID:19906290   PMID:19946098   PMID:19998456   PMID:20019840   PMID:20177845  
PMID:20199686   PMID:20230526   PMID:20336055   PMID:20354454   PMID:20378664   PMID:20405247   PMID:20491779   PMID:20567952   PMID:20574427   PMID:20619441   PMID:20621328   PMID:20628624  
PMID:21041728   PMID:21086907   PMID:21147107   PMID:21266361   PMID:21299347   PMID:21308865   PMID:21359202   PMID:21536545   PMID:21633165   PMID:21641619   PMID:21666711   PMID:21676268  
PMID:21684315   PMID:21697762   PMID:21710320   PMID:21726833   PMID:21802218   PMID:21806966   PMID:21813394   PMID:21815873   PMID:21824412   PMID:21828044   PMID:21835433   PMID:21849440  
PMID:21873635   PMID:21935375   PMID:21956537   PMID:21961844   PMID:21984372   PMID:22014860   PMID:22119938   PMID:22135002   PMID:22237177   PMID:22262195   PMID:22322379   PMID:22335271  
PMID:22354323   PMID:22369943   PMID:22480875   PMID:22500096   PMID:22528516   PMID:22529013   PMID:22610780   PMID:22731636   PMID:22745528   PMID:22760497   PMID:22800863   PMID:22839505  
PMID:22855175   PMID:22926560   PMID:23011824   PMID:23012401   PMID:23028444   PMID:23087328   PMID:23112116   PMID:23143956   PMID:23300877   PMID:23314606   PMID:23318912   PMID:23396061  
PMID:23398509   PMID:23419168   PMID:23532603   PMID:23539485   PMID:23553902   PMID:23600676   PMID:23679566   PMID:23679813   PMID:23775727   PMID:23835592   PMID:23836489   PMID:23852892  
PMID:23881416   PMID:24166603   PMID:24167614   PMID:24193512   PMID:24286662   PMID:24327257   PMID:24363164   PMID:24366074   PMID:24393851   PMID:24467938   PMID:24474454   PMID:24501201  
PMID:24557789   PMID:24622067   PMID:24631171   PMID:24754246   PMID:24894672   PMID:24955581   PMID:24977325   PMID:25130147   PMID:25174257   PMID:25338637   PMID:25503963   PMID:25600590  
PMID:25641732   PMID:25666875   PMID:25804234   PMID:25820321   PMID:25830931   PMID:25872416   PMID:25892097   PMID:25942344   PMID:26019472   PMID:26039238   PMID:26040280   PMID:26059947  
PMID:26072079   PMID:26076835   PMID:26097606   PMID:26187149   PMID:26191160   PMID:26227486   PMID:26245161   PMID:26298632   PMID:26351781   PMID:26444008   PMID:26608371   PMID:26617852  
PMID:26647656   PMID:26707501   PMID:26712693   PMID:26718436   PMID:26830684   PMID:26852663   PMID:26900300   PMID:26910849   PMID:27157614   PMID:27179633   PMID:27276062   PMID:27287269  
PMID:27332878   PMID:27377469   PMID:27470135   PMID:27494878   PMID:27521216   PMID:27589896   PMID:27613575   PMID:27659530   PMID:27768764   PMID:27798870   PMID:27837613   PMID:27955675  
PMID:28121626   PMID:28182766   PMID:28315505   PMID:28344048   PMID:28391164   PMID:28418843   PMID:28440417   PMID:28440503   PMID:28659655   PMID:28674079   PMID:28967636   PMID:29095550  
PMID:29096706   PMID:29277789   PMID:29663362   PMID:29739071   PMID:29844385   PMID:29905375   PMID:30297396   PMID:30317611   PMID:30327565   PMID:30381446   PMID:30407110   PMID:30467381  
PMID:30543135   PMID:30564864   PMID:30959137   PMID:31032901   PMID:31128028   PMID:31180548   PMID:31181422   PMID:31334674   PMID:31367043   PMID:31511354   PMID:31614769   PMID:31624236  
PMID:31849037   PMID:31914639   PMID:32124945   PMID:32168400   PMID:32197932   PMID:32224528   PMID:32282702   PMID:32329406   PMID:32394616   PMID:32576128   PMID:32684047   PMID:32765491  
PMID:32790899   PMID:32986350   PMID:33046442   PMID:33084148   PMID:33427725   PMID:33485866   PMID:34281882  


Genomics

Comparative Map Data
CD24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6106,969,831 - 106,975,627 (-)EnsemblGRCh38hg38GRCh38
GRCh386106,969,831 - 106,976,855 (-)NCBIGRCh38GRCh38hg38GRCh38
Build 36621,152,527 - 21,154,705NCBINCBI36hg18NCBI36
Build 34Y19,540,683 - 19,542,776NCBI
CeleraY6,620,552 - 6,622,554 (+)NCBI
Cytogenetic Map6q21NCBI
HuRef6104,864,115 - 104,868,879 (-)NCBIHuRef
Cd24a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,454,433 - 43,460,261 (+)NCBIGRCm39mm39
GRCm39 Ensembl1043,454,280 - 43,460,261 (+)Ensembl
GRCm381043,579,169 - 43,584,265 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,578,284 - 43,584,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv371043,298,975 - 43,304,071 (+)NCBIGRCm37mm9NCBIm37
MGSCv361043,267,584 - 43,272,680 (+)NCBImm8
Celera1044,451,209 - 44,456,305 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.01NCBI
Cd24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22047,074,353 - 47,079,662 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2047,073,512 - 47,079,662 (+)Ensembl
Rnor_6.02048,335,540 - 48,340,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,335,540 - 48,340,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,989,320 - 49,994,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,502,354 - 47,507,663 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12047,531,055 - 47,536,352 (+)NCBI
Celera2052,908,730 - 52,914,027 (-)NCBICelera
RH 3.4 Map20495.52RGD
RH 3.4 Map20493.45RGD
Cytogenetic Map20q13NCBI
Cd24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,270,881 - 32,275,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,270,881 - 32,275,236 (-)NCBIChiLan1.0ChiLan1.0
CD24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11535,991,289 - 35,993,436 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,655,624 - 108,657,847 (-)NCBIpanpan1.1panPan2
Mhudiblu_PPA_v06104,783,720 - 104,789,509 (-)NCBIMhudiblu_PPA_v0panPan3
CD24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,239,957 - 64,245,114 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,026,788 - 64,032,059 (-)NCBI
ROS_Cfam_1.01265,083,676 - 65,088,953 (-)NCBI
UMICH_Zoey_3.11264,443,727 - 64,448,980 (-)NCBI
UNSW_CanFamBas_1.01264,287,882 - 64,293,144 (-)NCBI
UU_Cfam_GSD_1.01264,561,114 - 64,566,403 (-)NCBI
LOC101968601
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629211,864,267 - 11,864,552 (-)NCBI
SpeTri2.0NW_00493649116,706,745 - 16,707,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100519934
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1173,119,758 - 73,124,368 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,267,687 - 82,273,306 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,863,164 - 66,868,951 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604039,191,025 - 39,196,629 (+)NCBIVero_WHO_p1.0
Cd24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478015,287,426 - 15,292,292 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
DYS415  
Human AssemblyChrPosition (strand)SourceJBrowse
CeleraY6,622,244 - 6,622,521RGD
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
HuRef6104,864,152 - 104,864,429UniSTS
RH15606  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y21,152,702 - 21,152,820UniSTSGRCh37
CeleraY6,622,260 - 6,622,378RGD
Celera6108,038,084 - 108,038,202UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
HuRefY14,861,330 - 14,861,448UniSTS
HuRef6104,864,295 - 104,864,413UniSTS
RH70313  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371556,365,091 - 56,365,230UniSTSGRCh37
GRCh37Y21,153,558 - 21,153,697UniSTSGRCh37
Build 361554,152,383 - 54,152,522RGDNCBI36
Celera1533,253,869 - 33,254,008UniSTS
CeleraY6,621,383 - 6,621,522RGD
Cytogenetic Map6q21UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic MapYq11.222UniSTS
HuRef1533,188,876 - 33,189,015UniSTS
HuRef6104,865,152 - 104,865,291UniSTS
GDB:384220  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y21,154,534 - 21,154,639UniSTSGRCh37
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
GDB:384235  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y21,154,390 - 21,154,602UniSTSGRCh37
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
HuRef1533,187,396 - 33,187,602UniSTS
GDB:384236  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y21,152,920 - 21,154,530UniSTSGRCh37
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
GDB:585571  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y21,154,326 - 21,154,461UniSTSGRCh37
CeleraY6,620,619 - 6,620,754RGD
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
HuRef6104,865,920 - 104,866,055UniSTS
PMC95860P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371556,365,246 - 56,365,567UniSTSGRCh37
GRCh37Y21,153,240 - 21,153,542UniSTSGRCh37
Build 361554,152,538 - 54,152,859RGDNCBI36
Celera1533,254,024 - 33,254,345UniSTS
CeleraY6,621,538 - 6,621,840RGD
Cytogenetic Map6q21UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic MapYq11.222UniSTS
HuRef1533,189,031 - 33,189,355UniSTS
HuRef6104,864,834 - 104,865,136UniSTS
CD24_1314  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371556,365,191 - 56,366,059UniSTSGRCh37
GRCh37Y21,152,750 - 21,153,597UniSTSGRCh37
Build 361554,152,483 - 54,153,351RGDNCBI36
Celera1533,253,969 - 33,254,837UniSTS
CeleraY6,621,483 - 6,622,330RGD
HuRef6104,864,343 - 104,865,191UniSTS
RH66795  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371556,363,808 - 56,364,265UniSTSGRCh37
GRCh37Y21,154,259 - 21,154,400UniSTSGRCh37
Celera1533,252,586 - 33,253,043UniSTS
CeleraY6,620,680 - 6,620,821RGD
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
Cytogenetic Map15q21.3UniSTS
HuRef6104,865,853 - 104,865,994UniSTS
GeneMap99-GB4 RH Map6460.76UniSTS
sY3210  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y21,152,489 - 21,152,710UniSTSGRCh37
CeleraY6,622,370 - 6,622,591UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
HuRefY14,861,117 - 14,861,338UniSTS
sY3211  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y21,153,374 - 21,153,767UniSTSGRCh37
CeleraY6,621,313 - 6,621,706UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic MapYq11.222UniSTS
HuRef6104,864,968 - 104,865,361UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 55 268 47 14 7 113 1 14 28 25 291 44
Medium 1068 544 678 218 1029 100 1437 159 862 142 563 1077 127 42 723 3
Low 1211 1487 465 168 684 168 1795 1088 2242 12 637 93 1063 1188 1
Below cutoff 17 949 73 46 969 939 546 35 2 99 874

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_041768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_117089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_117090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide ABBA01026189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL535013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU125939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG260536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG755979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU580553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D87667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA253943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA378105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA518957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA521039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA745135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA753855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ530230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ530231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ530232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ530233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ530234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ226006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP885534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JC231858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN036721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN565036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN565037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN565038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN565039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN565040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN565041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN565042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L33930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M58664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X69397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y14692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000606017   ⟹   ENSP00000475625
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6106,969,831 - 106,974,729 (-)Ensembl
RefSeq Acc Id: ENST00000610952   ⟹   ENSP00000483838
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6106,971,469 - 106,975,627 (-)Ensembl
RefSeq Acc Id: ENST00000615659   ⟹   ENSP00000479895
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6106,971,003 - 106,975,327 (-)Ensembl
RefSeq Acc Id: ENST00000619133   ⟹   ENSP00000483985
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6106,969,831 - 106,975,465 (-)Ensembl
RefSeq Acc Id: ENST00000619869   ⟹   ENSP00000478460
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6106,971,360 - 106,975,459 (-)Ensembl
RefSeq Acc Id: ENST00000620405   ⟹   ENSP00000478302
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6106,971,094 - 106,974,732 (-)Ensembl
RefSeq Acc Id: ENST00000621311
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6106,973,387 - 106,975,162 (-)Ensembl
RefSeq Acc Id: ENST00000622315   ⟹   ENSP00000481841
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6106,971,380 - 106,974,039 (-)Ensembl
RefSeq Acc Id: NM_001291737   ⟹   NP_001278666
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386106,969,831 - 106,975,627 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291738   ⟹   NP_001278667
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386106,969,831 - 106,976,855 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291739   ⟹   NP_001278668
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386106,969,831 - 106,974,039 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359084   ⟹   NP_001346013
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386106,969,831 - 106,974,729 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013230   ⟹   NP_037362
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386106,969,831 - 106,975,465 (-)NCBI
HuRef6104,864,115 - 104,868,879 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NR_117089
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386106,969,831 - 106,975,627 (-)NCBI
Sequence:
RefSeq Acc Id: NR_117090
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386106,969,831 - 106,975,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024446293   ⟹   XP_024302061
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386106,969,831 - 106,976,015 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_037362   ⟸   NM_013230
- Peptide Label: isoform a preproprotein
- UniProtKB: P25063 (UniProtKB/Swiss-Prot),   B6EC88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278667   ⟸   NM_001291738
- Peptide Label: isoform a preproprotein
- UniProtKB: P25063 (UniProtKB/Swiss-Prot),   B6EC88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278666   ⟸   NM_001291737
- Peptide Label: isoform a preproprotein
- UniProtKB: P25063 (UniProtKB/Swiss-Prot),   B6EC88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278668   ⟸   NM_001291739
- Peptide Label: isoform b
- UniProtKB: A0A087WYI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024302061   ⟸   XM_024446293
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001346013   ⟸   NM_001359084
- Peptide Label: isoform a preproprotein
- Sequence:
RefSeq Acc Id: ENSP00000478302   ⟸   ENST00000620405
RefSeq Acc Id: ENSP00000481841   ⟸   ENST00000622315
RefSeq Acc Id: ENSP00000483838   ⟸   ENST00000610952
RefSeq Acc Id: ENSP00000479895   ⟸   ENST00000615659
RefSeq Acc Id: ENSP00000478460   ⟸   ENST00000619869
RefSeq Acc Id: ENSP00000483985   ⟸   ENST00000619133
RefSeq Acc Id: ENSP00000475625   ⟸   ENST00000606017


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6q16.3-21(chr6:102356502-111049879)x1 copy number loss See cases [RCV000134806] Chr6:102356502..111049879 [GRCh38]
Chr6:102804377..111371082 [GRCh37]
Chr6:102911070..111477775 [NCBI36]
Chr6:6q16.3-21
pathogenic
GRCh38/hg38 6q16.1-22.31(chr6:96609994-122161548)x1 copy number loss See cases [RCV000139465] Chr6:96609994..122161548 [GRCh38]
Chr6:97057870..122482694 [GRCh37]
Chr6:97164591..122524393 [NCBI36]
Chr6:6q16.1-22.31
pathogenic
GRCh38/hg38 6q13-24.1(chr6:74382807-142040500)x3 copy number gain See cases [RCV000139729] Chr6:74382807..142040500 [GRCh38]
Chr6:75092523..142361637 [GRCh37]
Chr6:75149243..142403330 [NCBI36]
Chr6:6q13-24.1
pathogenic
GRCh38/hg38 6q21-22.31(chr6:106503719-125781219)x1 copy number loss See cases [RCV000141587] Chr6:106503719..125781219 [GRCh38]
Chr6:106951594..126102365 [GRCh37]
Chr6:107058287..126144058 [NCBI36]
Chr6:6q21-22.31
pathogenic
GRCh38/hg38 6q16.3-21(chr6:103279465-113934239)x1 copy number loss See cases [RCV000142287] Chr6:103279465..113934239 [GRCh38]
Chr6:103727340..114255403 [GRCh37]
Chr6:103834033..114362096 [NCBI36]
Chr6:6q16.3-21
pathogenic
GRCh38/hg38 6q16.3-22.31(chr6:100054889-120488154)x1 copy number loss See cases [RCV000143227] Chr6:100054889..120488154 [GRCh38]
Chr6:100502765..120809300 [GRCh37]
Chr6:100609486..120850999 [NCBI36]
Chr6:6q16.3-22.31
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1645 AgrOrtholog
COSMIC CD24 COSMIC
Ensembl Genes ENSG00000272398 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000475625 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000478302 UniProtKB/TrEMBL
  ENSP00000478460 UniProtKB/TrEMBL
  ENSP00000479895 UniProtKB/TrEMBL
  ENSP00000481841 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000483838 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000483985 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000606017 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000610952 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000615659 UniProtKB/TrEMBL
  ENST00000619133 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000619869 UniProtKB/TrEMBL
  ENST00000620405 UniProtKB/TrEMBL
  ENST00000622315 ENTREZGENE, UniProtKB/Swiss-Prot
GTEx ENSG00000272398 GTEx
HGNC ID HGNC:1645 ENTREZGENE
Human Proteome Map CD24 Human Proteome Map
InterPro CD24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:100133941 UniProtKB/Swiss-Prot
NCBI Gene 100133941 ENTREZGENE
OMIM 600074 OMIM
PANTHER PTHR16676 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CD24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26202 PharmGKB
UniProt A0A087WU21_HUMAN UniProtKB/TrEMBL
  A0A087WU87_HUMAN UniProtKB/TrEMBL
  A0A087WW33_HUMAN UniProtKB/TrEMBL
  A0A087WYI6 ENTREZGENE
  B6EC88 ENTREZGENE
  CD24_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A087WYI6 UniProtKB/Swiss-Prot
  B6EC88 UniProtKB/Swiss-Prot
  Q16257 UniProtKB/Swiss-Prot
  Q53XS0 UniProtKB/Swiss-Prot
  R4I4T5 UniProtKB/Swiss-Prot