Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | X-linked deafness 4 | | ISO | SMPX (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | X-linked deafness 4 | | ISO | SMPX (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | MGD IEA | MGD IEA |
4. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
5. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
6. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:10598820 | PMID:10882515 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:11238910 | PMID:11381084 | PMID:11401441 | PMID:12466851 | PMID:12477932 |
PMID:14610273 | PMID:14681479 | PMID:15042700 | PMID:15073151 | PMID:15143159 | PMID:15363409 | PMID:15459098 | PMID:15475267 | PMID:15489334 | PMID:15843407 | PMID:15843414 | PMID:15893749 |
PMID:15901664 | PMID:16141072 | PMID:16141073 | PMID:16314491 | PMID:16543498 | PMID:16554359 | PMID:17050624 | PMID:17259303 | PMID:17473172 | PMID:17585069 | PMID:17904117 | PMID:18554416 |
PMID:18723448 | PMID:20651287 | PMID:20737509 | PMID:20890042 | PMID:21267068 | PMID:21519551 | PMID:21873635 | PMID:22412967 | PMID:22682244 | PMID:23233153 | PMID:23754746 | PMID:24936977 |
PMID:26075897 | PMID:28687930 | PMID:32325033 | PMID:32492250 | PMID:33795231 | PMID:34722533 |
Smpx (Mus musculus - house mouse) |
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SMPX (Homo sapiens - human) |
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Smpx (Rattus norvegicus - Norway rat) |
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Smpx (Chinchilla lanigera - long-tailed chinchilla) |
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SMPX (Pan paniscus - bonobo/pygmy chimpanzee) |
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SMPX (Canis lupus familiaris - dog) |
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Smpx (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SMPX (Sus scrofa - pig) |
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SMPX (Chlorocebus sabaeus - green monkey) |
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Smpx (Heterocephalus glaber - naked mole-rat) |
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Variants in Smpx
1415 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
Smpx |
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RefSeq Transcripts | NM_001252591 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NR_045569 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_103722 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_387086 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AA434782 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AF364070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AI035961 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AJ245772 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK003105 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK009857 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK010172 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL731811 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY026524 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC051197 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC061051 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC132358 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC138801 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BQ176246 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466571 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
W18646 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000038007 ⟹ ENSMUSP00000048522 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000112520 ⟹ ENSMUSP00000108139 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000112521 ⟹ ENSMUSP00000108140 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000126418 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000132805 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000136141 ⟹ ENSMUSP00000119573 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000147283 ⟹ ENSMUSP00000120412 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000190091 ⟹ ENSMUSP00000140268 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001252591 ⟹ NP_001239520 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_045569 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_103722 | ||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||
Type: | NON-CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XR_387086 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001239520 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH51197 | (Get FASTA) | NCBI Sequence Viewer |
AAH61051 | (Get FASTA) | NCBI Sequence Viewer | |
AAI32359 | (Get FASTA) | NCBI Sequence Viewer | |
AAI38802 | (Get FASTA) | NCBI Sequence Viewer | |
AAK07682 | (Get FASTA) | NCBI Sequence Viewer | |
AAK50398 | (Get FASTA) | NCBI Sequence Viewer | |
BAB22568 | (Get FASTA) | NCBI Sequence Viewer | |
BAC25273 | (Get FASTA) | NCBI Sequence Viewer | |
BAC25284 | (Get FASTA) | NCBI Sequence Viewer | |
CAC08493 | (Get FASTA) | NCBI Sequence Viewer | |
EDL40828 | (Get FASTA) | NCBI Sequence Viewer | |
EDL40829 | (Get FASTA) | NCBI Sequence Viewer | |
EDL40830 | (Get FASTA) | NCBI Sequence Viewer | |
EDL40831 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000048522.4 | ||
ENSMUSP00000108139.2 | |||
ENSMUSP00000108140 | |||
ENSMUSP00000108140.2 | |||
ENSMUSP00000119573.2 | |||
ENSMUSP00000120412.2 | |||
ENSMUSP00000140268.2 | |||
GenBank Protein | Q9DC77 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001239520 ⟸ NM_001252591 |
- UniProtKB: | Q8CEX8 (UniProtKB/Swiss-Prot), Q4QRM9 (UniProtKB/Swiss-Prot), A2RT38 (UniProtKB/Swiss-Prot), Q9ER98 (UniProtKB/Swiss-Prot), Q9DC77 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000120412 ⟸ ENSMUST00000147283 |
RefSeq Acc Id: | ENSMUSP00000108140 ⟸ ENSMUST00000112521 |
RefSeq Acc Id: | ENSMUSP00000108139 ⟸ ENSMUST00000112520 |
RefSeq Acc Id: | ENSMUSP00000140268 ⟸ ENSMUST00000190091 |
RefSeq Acc Id: | ENSMUSP00000048522 ⟸ ENSMUST00000038007 |
RefSeq Acc Id: | ENSMUSP00000119573 ⟸ ENSMUST00000136141 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9DC77-F1-model_v2 | AlphaFold | Q9DC77 | 1-85 | view protein structure |
RGD ID: | 13681714 | ||||||||
Promoter ID: | EPDNEW_M25006 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Smpx_2 | ||||||||
Description: | Mus musculus small muscle protein, X-linked , transcript variant2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M25007 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 13681718 | ||||||||
Promoter ID: | EPDNEW_M25007 | ||||||||
Type: | initiation region | ||||||||
Name: | Smpx_1 | ||||||||
Description: | Mus musculus small muscle protein, X-linked , transcript variant2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M25006 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1913356 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000041476 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000038007.10 | UniProtKB/Swiss-Prot |
ENSMUST00000112520.2 | UniProtKB/Swiss-Prot | |
ENSMUST00000112521 | ENTREZGENE | |
ENSMUST00000112521.8 | UniProtKB/Swiss-Prot | |
ENSMUST00000136141.2 | UniProtKB/TrEMBL | |
ENSMUST00000147283.8 | UniProtKB/TrEMBL | |
ENSMUST00000190091.7 | UniProtKB/Swiss-Prot | |
InterPro | Chisel | UniProtKB/Swiss-Prot |
KEGG Report | mmu:66106 | UniProtKB/Swiss-Prot |
MGD | MGI:1913356 | ENTREZGENE |
NCBI Gene | 66106 | ENTREZGENE |
PANTHER | PTHR17416 | UniProtKB/Swiss-Prot |
SMALL MUSCULAR PROTEIN | UniProtKB/Swiss-Prot | |
Pfam | Chisel | UniProtKB/Swiss-Prot |
PhenoGen | Smpx | PhenoGen |
UniProt | A2RT38 | ENTREZGENE |
B1AW13_MOUSE | UniProtKB/TrEMBL | |
D6RJ22_MOUSE | UniProtKB/TrEMBL | |
Q4QRM9 | ENTREZGENE | |
Q8CEX8 | ENTREZGENE | |
Q9DC77 | ENTREZGENE | |
Q9ER98 | ENTREZGENE | |
SMPX_MOUSE | UniProtKB/Swiss-Prot | |
UniProt Secondary | A2RT38 | UniProtKB/Swiss-Prot |
Q4QRM9 | UniProtKB/Swiss-Prot | |
Q8CEX8 | UniProtKB/Swiss-Prot | |
Q9ER98 | UniProtKB/Swiss-Prot |