SELENOF (selenoprotein F) - Rat Genome Database

Name: SELENOF
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SELENOF (selenoprotein F) Homo sapiens

Analyze

Symbol:

SELENOF

Name:

selenoprotein F

RGD ID:

736154

HGNC Page

HGNC:17705

Description:

Predicted to enable oxidoreductase activity. Predicted to be involved in 'de novo' post-translational protein folding. Located in endoplasmic reticulum lumen.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

15 kDa selenoprotein; selenoprotein; selenoprotein F (15kDa); SEP15

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Selenof (selenoprotein F)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Selenof (selenoprotein F)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Chinchilla lanigera (long-tailed chinchilla):	Selenof (selenoprotein F)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	SELENOF (selenoprotein F)	NCBI	Ortholog
Canis lupus familiaris (dog):	SELENOF (selenoprotein F)	HGNC	HomoloGene, NCBI
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Selenof (selenoprotein F)	NCBI	Ortholog
Sus scrofa (pig):	SELENOF (selenoprotein F)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Treefam
Chlorocebus sabaeus (green monkey):	SELENOF (selenoprotein F)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Selenof (selenoprotein F)	NCBI	Ortholog
Other homologs ²
Canis lupus familiaris (dog):	LOC119881455 (selenoprotein F-like)	HGNC	Ensembl
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Selenof (selenoprotein F)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Selenof (selenoprotein F)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y76B12C.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7484	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	selenof	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus laevis (African clawed frog):	selenof.L	Alliance	DIOPT (Xenbase)
Xenopus tropicalis (tropical clawed frog):	selenof	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus laevis (African clawed frog):	selenof.S	Alliance	DIOPT (Xenbase)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	86,862,445 - 86,914,577 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	86,862,445 - 86,914,424 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	87,328,128 - 87,380,260 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	87,100,716 - 87,152,695 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	87,040,150 - 87,092,128	NCBI
Celera	1	85,571,522 - 85,623,478 (-)	NCBI		Celera
Cytogenetic Map	1	p22.3	NCBI
HuRef	1	85,439,167 - 85,491,281 (-)	NCBI		HuRef
CHM1_1	1	87,442,961 - 87,495,032 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	86,703,158 - 86,755,135 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2-hydroxypropanoic acid (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (ISO)

aflatoxin B1 (EXP)

aflatoxin M1 (EXP)

ammonium chloride (ISO)

arsenic acid (ISO)

arsenite(3-) (EXP,ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (EXP)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (EXP)

chloropicrin (EXP)

clofibrate (ISO)

cyclosporin A (EXP)

decabromodiphenyl ether (EXP)

dicrotophos (EXP)

disodium selenite (EXP)

elemental selenium (EXP,ISO)

ethanol (ISO)

folic acid (ISO)

gallic acid (EXP)

glafenine (ISO)

inulin (ISO)

ivermectin (EXP)

lead(0) (EXP)

perfluorooctane-1-sulfonic acid (ISO)

potassium dichromate (EXP)

rac-lactic acid (EXP)

Se-methyl-L-selenocysteine (EXP)

Se-methylselenocysteine (EXP)

selenium atom (EXP,ISO)

sodium arsenite (ISO)

sunitinib (EXP)

tetrachloromethane (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

'de novo' post-translational protein folding (TAS)

cellular oxidant detoxification (IEA)

sperm DNA condensation (IEA,ISO)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum lumen (IBA,IDA,IEA)

Molecular Function

oxidoreductase activity (IBA)

protein binding (IPI)

selenium binding (IEA)

thioredoxin peroxidase activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8125298	PMID:9535873	PMID:10945981	PMID:11230166	PMID:11278576	PMID:11898406	PMID:12477932	PMID:12600282	PMID:12665801	PMID:15107826	PMID:15198809	PMID:15489334
PMID:16710414	PMID:18239845	PMID:18676680	PMID:19170196	PMID:19625176	PMID:19692168	PMID:20378690	PMID:20424130	PMID:20852007	PMID:21048031	PMID:21052528	PMID:21145461
PMID:21873635	PMID:21900206	PMID:23349634	PMID:23376485	PMID:25249019	PMID:25529450	PMID:25544563	PMID:25728752	PMID:26264612	PMID:26496610	PMID:26638075	PMID:27228552
PMID:27432908	PMID:27609421	PMID:28298427	PMID:28515276	PMID:28598259	PMID:29314169	PMID:29410696	PMID:29653292	PMID:30833792	PMID:31109102	PMID:31470122	PMID:31665936
PMID:31952546	PMID:32707033	PMID:33845483	PMID:33957083	PMID:33961781	PMID:34079125	PMID:34709727	PMID:34769469	PMID:35007762	PMID:35112407	PMID:35253629	PMID:35271311
PMID:35384245	PMID:35696571	PMID:35831314	PMID:35941108	PMID:36334799	PMID:36610398	PMID:36966971	PMID:36979420	PMID:38113892

Genomics

Comparative Map Data

SELENOF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	86,862,445 - 86,914,577 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	86,862,445 - 86,914,424 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	87,328,128 - 87,380,260 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	87,100,716 - 87,152,695 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	87,040,150 - 87,092,128	NCBI
Celera	1	85,571,522 - 85,623,478 (-)	NCBI		Celera
Cytogenetic Map	1	p22.3	NCBI
HuRef	1	85,439,167 - 85,491,281 (-)	NCBI		HuRef
CHM1_1	1	87,442,961 - 87,495,032 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	86,703,158 - 86,755,135 (-)	NCBI		T2T-CHM13v2.0

Selenof
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	144,276,188 - 144,303,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	144,276,065 - 144,303,441 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	144,570,427 - 144,597,677 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	144,570,304 - 144,597,680 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	144,233,391 - 144,260,641 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	144,507,865 - 144,535,063 (+)	NCBI		MGSCv36	mm8
Celera	3	151,011,453 - 151,038,703 (+)	NCBI		Celera
Cytogenetic Map	3	H2	NCBI
cM Map	3	68.94	NCBI

Selenof
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	236,302,439 - 236,335,216 (+)	NCBI		GRCr8
mRatBN7.2	2	233,642,075 - 233,674,853 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	233,641,932 - 233,674,846 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	241,427,793 - 241,460,472 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	239,321,973 - 239,354,726 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	234,185,401 - 234,218,084 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	250,600,823 - 250,633,903 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	250,600,823 - 250,633,897 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	269,129,474 - 269,162,554 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	242,760,401 - 242,793,046 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	242,747,416 - 242,779,771 (+)	NCBI
Celera	2	225,635,260 - 225,668,028 (+)	NCBI		Celera
Cytogenetic Map	2	q44	NCBI

Selenof
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	7,254,214 - 7,285,179 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	7,253,980 - 7,285,442 (+)	NCBI	ChiLan1.0	ChiLan1.0

SELENOF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	140,058,476 - 140,108,100 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	139,213,888 - 139,263,531 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	119,382,707 - 119,432,277 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	88,233,358 - 88,283,193 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	88,234,383 - 88,282,944 (-)	Ensembl	panpan1.1		panPan2

SELENOF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	61,299,310 - 61,341,035 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	61,299,310 - 61,341,035 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	64,013,065 - 64,054,790 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	61,838,622 - 61,880,416 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	61,838,908 - 61,881,268 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	61,372,462 - 61,414,027 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	61,335,863 - 61,377,517 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	61,834,540 - 61,876,189 (+)	NCBI		UU_Cfam_GSD_1.0

Selenof
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	97,459,228 - 97,491,731 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936732	1,947,624 - 1,977,577 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936732	1,947,357 - 1,978,328 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SELENOF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	129,258,944 - 129,287,720 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	129,258,943 - 129,287,727 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	141,706,376 - 141,735,552 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SELENOF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	46,546,719 - 46,596,175 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	71,236,552 - 71,286,047 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Selenof
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	10,696,513 - 10,728,887 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	10,696,281 - 10,729,622 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SELENOF
4 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 1p31.1-13.3(chr1:72661709-107456880)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]\|See cases [RCV000051825]	Chr1:72661709..107456880 [GRCh38] Chr1:73127392..107999502 [GRCh37] Chr1:72899980..107801025 [NCBI36] Chr1:1p31.1-13.3	pathogenic
NM_004261.3(SEP15):c.84+2175C>T	single nucleotide variant	Lung cancer [RCV000091028]	Chr1:86911853 [GRCh38] Chr1:87377536 [GRCh37] Chr1:1p22.3	uncertain significance
GRCh38/hg38 1p31.1-21.1(chr1:83457325-104273917)x3	copy number gain	See cases [RCV000135654]	Chr1:83457325..104273917 [GRCh38] Chr1:83923008..104816539 [GRCh37] Chr1:83695596..104618062 [NCBI36] Chr1:1p31.1-21.1	pathogenic
GRCh38/hg38 1p22.3-22.2(chr1:86228890-88466303)x1	copy number loss	See cases [RCV000138370]	Chr1:86228890..88466303 [GRCh38] Chr1:86694573..88931986 [GRCh37] Chr1:86467161..88704574 [NCBI36] Chr1:1p22.3-22.2	uncertain significance
GRCh38/hg38 1p31.1-22.2(chr1:76419302-88628464)x1	copy number loss	See cases [RCV000138957]	Chr1:76419302..88628464 [GRCh38] Chr1:76884987..89094147 [GRCh37] Chr1:76657575..88866735 [NCBI36] Chr1:1p31.1-22.2	pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3	copy number loss	not provided [RCV000762767]	Chr1:20608823..120546301 [GRCh37] Chr1:1p36.12-12	likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3	copy number gain	See cases [RCV000510383]	Chr1:849467..249224684 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p31.1-22.1(chr1:72044544-92505091)x1	copy number loss	See cases [RCV000510161]	Chr1:72044544..92505091 [GRCh37] Chr1:1p31.1-22.1	pathogenic
GRCh37/hg19 1p31.3-22.3(chr1:64321264-88153669)x1	copy number loss	See cases [RCV000511392]	Chr1:64321264..88153669 [GRCh37] Chr1:1p31.3-22.3	pathogenic\|uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)	copy number gain	See cases [RCV000510926]	Chr1:849467..249224684 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3	copy number gain	not provided [RCV000736295]	Chr1:47851..249228449 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3	copy number gain	not provided [RCV000736305]	Chr1:82154..249218992 [GRCh37] Chr1:1p36.33-q44	pathogenic
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3	copy number gain	Global developmental delay [RCV000787285]	Chr1:103343285..103455144 [GRCh37] Chr1:1p36.22-21.1	uncertain significance
Single allele	deletion	not provided [RCV000844927]	Chr1:66085524..88429789 [GRCh37] Chr1:1p31.3-22.2	not provided
GRCh37/hg19 1p31.1-22.2(chr1:80804502-89490384)x3	copy number gain	not provided [RCV001259073]	Chr1:80804502..89490384 [GRCh37] Chr1:1p31.1-22.2	likely pathogenic
GRCh37/hg19 1p31.3-22.1(chr1:68180293-92731957)	copy number loss	not specified [RCV002053392]	Chr1:68180293..92731957 [GRCh37] Chr1:1p31.3-22.1	pathogenic
NM_004261.5(SELENOF):c.491G>A (p.Arg164His)	single nucleotide variant	Inborn genetic diseases [RCV003297737]	Chr1:86863481 [GRCh38] Chr1:87329164 [GRCh37] Chr1:1p22.3	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	990
Count of miRNA genes:	408
Interacting mature miRNAs:	428
Transcripts:	ENST00000331835, ENST00000370554, ENST00000401030, ENST00000467557, ENST00000469566, ENST00000497861
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

RH102912

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	87,343,901 - 87,344,061	UniSTS	GRCh37
Build 36	1	87,116,489 - 87,116,649	RGD	NCBI36
Celera	1	85,587,270 - 85,587,430	RGD
Cytogenetic Map	1	p31	UniSTS
HuRef	1	85,454,948 - 85,455,108	UniSTS
GeneMap99-GB4 RH Map	1	242.64	UniSTS

G54091

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	87,328,782 - 87,328,916	UniSTS	GRCh37
Build 36	1	87,101,370 - 87,101,504	RGD	NCBI36
Celera	1	85,572,176 - 85,572,310	RGD
Cytogenetic Map	1	p31	UniSTS
HuRef	1	85,439,821 - 85,439,955	UniSTS

G54028

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	87,328,445 - 87,328,576	UniSTS	GRCh37
Build 36	1	87,101,033 - 87,101,164	RGD	NCBI36
Celera	1	85,571,839 - 85,571,970	RGD
Cytogenetic Map	1	p31	UniSTS
HuRef	1	85,439,484 - 85,439,615	UniSTS

SHGC-75087

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	87,328,838 - 87,328,954	UniSTS	GRCh37
Build 36	1	87,101,426 - 87,101,542	RGD	NCBI36
Celera	1	85,572,232 - 85,572,348	RGD
Cytogenetic Map	1	p31	UniSTS
HuRef	1	85,439,877 - 85,439,993	UniSTS
TNG Radiation Hybrid Map	1	49818.0	UniSTS
GeneMap99-GB4 RH Map	1	243.87	UniSTS
GeneMap99-GB4 RH Map	1	240.96	UniSTS
Whitehead-RH Map	1	247.3	UniSTS

D1S3349

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	87,328,627 - 87,328,734	UniSTS	GRCh37
Build 36	1	87,101,215 - 87,101,322	RGD	NCBI36
Celera	1	85,572,021 - 85,572,128	RGD
Cytogenetic Map	1	p31	UniSTS
TNG Radiation Hybrid Map	1	49813.0	UniSTS
GeneMap99-GB4 RH Map	1	241.0	UniSTS
GeneMap99-GB4 RH Map	1	240.89	UniSTS
Whitehead-RH Map	1	245.4	UniSTS
Whitehead-YAC Contig Map	1		UniSTS

AL009717

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	1	87,379,637 - 87,379,824	UniSTS	GRCh37
Build 36	1	87,152,225 - 87,152,412	RGD	NCBI36
Celera	1	85,623,008 - 85,623,195	RGD
Cytogenetic Map	1	p31	UniSTS
Cytogenetic Map	1	p22.3	UniSTS
HuRef	1	85,490,811 - 85,490,998	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

2439

2936

1725

623

1938

464

4356

2155

3730

418

1426

1609

175

1204

2787

Low

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_004261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_203341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_144512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_144513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF051894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF267982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF288991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF288992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK225252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK225640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL121989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL833575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC005294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC016359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC021697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ429619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU941543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB066894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB452758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HY018581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000331835 ⟹ ENSP00000328729

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,862,445 - 86,914,126 (-)	Ensembl

RefSeq Acc Id:

ENST00000370554 ⟹ ENSP00000359585

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,862,725 - 86,914,134 (-)	Ensembl

RefSeq Acc Id:

ENST00000401030 ⟹ ENSP00000383810

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,863,301 - 86,914,126 (-)	Ensembl

RefSeq Acc Id:

ENST00000467557 ⟹ ENSP00000488471

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,868,096 - 86,914,065 (-)	Ensembl

RefSeq Acc Id:

ENST00000469566

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,863,167 - 86,914,424 (-)	Ensembl

RefSeq Acc Id:

ENST00000497861 ⟹ ENSP00000488294

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,863,517 - 86,903,352 (-)	Ensembl

RefSeq Acc Id:

ENST00000611507 ⟹ ENSP00000481113

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,862,447 - 86,914,424 (-)	Ensembl

RefSeq Acc Id:

ENST00000616787 ⟹ ENSP00000484190

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,862,447 - 86,914,424 (-)	Ensembl

RefSeq Acc Id:

ENST00000648872 ⟹ ENSP00000497584

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	86,862,827 - 86,914,370 (-)	Ensembl

RefSeq Acc Id:

NM_004261 ⟹ NP_004252

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	86,862,445 - 86,914,126 (-)	NCBI
GRCh37	1	87,328,128 - 87,380,107 (-)	ENTREZGENE
Build 36	1	87,100,716 - 87,152,695 (-)	NCBI Archive
HuRef	1	85,439,167 - 85,491,281 (-)	ENTREZGENE
CHM1_1	1	87,442,961 - 87,495,032 (-)	NCBI
T2T-CHM13v2.0	1	86,703,158 - 86,754,684 (-)	NCBI

Sequence:

show sequence

AGAAACCTGCGGAAAATGGTAGCGATGGCGGCTGGGCCGAGTGGGTGTCTGGTGCCGGCGTTTG
GGCTACGGTTGTTGTTGGCGACTGTGCTTCAAGCGGTGTCTGCTTTTGGGGCAGAGTTTTCATC
GGAGGCATGCAGAGAGTTAGGCTTTTCTAGCAACTTGCTTTGCAGCTCTTGTGATCTTCTCGGA
CAGTTCAACCTGCTTCAGCTGGATCCTGATTGCAGAGGATGCTGTCAGGAGGAAGCACAATTTG
AAACCAAAAAGCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAGGTTCCC
TCAAGTCCAAGCTTTTGTTAGGAGTGATAAACCCAAACTGTTCAGAGGACTGCAAATCAAGTAT
GTCCGTGGTTCAGACCCTGTATTAAAGCTTTTGGACGACAATGGGAACATTGCTGAAGAACTGA
GCATTCTCAAATGGAACACAGACAGTGTAGAAGAATTCCTGAGTGAAAAGTTGGAACGCATATA
AATCTTGCTTAAATTTTGTCCTATCCTTTTGTTACCTTATCAAATGAAATATTACAGCACCTAG
AAAATAATTTAGTTTTGCTTGCTTCCATTGATCAGTCTTTTACTTGAGGCATTAAATATCTAAT
TAAATCGTGAAATGGCAGTATAGTCCATGATATCTAAGGAGTTGGCAAGCTTAACAAAACCCAT
TTTTTATAAATGTCCATCCTCCTGCATTTGTTGATACCACTAACAAAATGCTTTGTAACAGACT
TGCGGTTAATTATGCAAATGATAGTTTGTGATAATTGGTCCAGTTTTACGAACAACAGATTTCT
AAATTAGAGAGGTTAACAAGACAGATGATTACTATGCCTCATGTGCTGTGTGCTCTTTGAAAGG
AATGACAGCAGACTACAAAGCAAATAAGATATACTGAGCCTCAACAGATTGCCTGCTCCTCAGA
GTCTCTCCTATTTTTGTATTACCCAGCTTTCTTTTTAATACAAATGTTATTTATAGTTTACAAT
GAATGCACTGCATAAAAACTTTGTAGCTTCATTATTGTAAAACATATTCAAGATCCTACAGTAA
GAGTGAAACATTCACAAAGATTTGCGTTAATGAAGACTACACAGAAAACCTTTCTAGGGATTTG
TGTGGATCAGATACATACTTGGCAAATTTTTGAGTTTTACATTCTTACAGAAAAGTCCATTTAA
AAGTGATCATTTGTAAGACCAAAATATAAATAAAAAGTTTCAAAAATCTATCTGAATTTGGAAT
TCTTCTGGTTTGTTCTTTCATGTTTAAAAATGATGTTTTTCAATGCATTTTTTTCATGTAAGCC
CTTTTTTTAGCCAAAATGTAAAAATGGCTGTAATATTTAAAACTTATAACATCTTATTGTTGGT
AATAGTGCTTTATATTTGTCTGATTTTATTTTTCAAAGTTTTTTCATTTATGAACACATTTTCA
TTGGTATATTATTTAAGGAATATCTCTTGATATAGAATTTTTATATTAAAAATGATTTTTCTTT
GCTTAA

hide sequence

RefSeq Acc Id:

NM_203341 ⟹ NP_976086

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	86,862,445 - 86,914,126 (-)	NCBI
GRCh37	1	87,328,128 - 87,380,107 (-)	ENTREZGENE
Build 36	1	87,100,716 - 87,152,695 (-)	NCBI Archive
HuRef	1	85,439,167 - 85,491,281 (-)	ENTREZGENE
CHM1_1	1	87,442,961 - 87,495,032 (-)	NCBI
T2T-CHM13v2.0	1	86,703,158 - 86,754,684 (-)	NCBI

Sequence:

show sequence

AGAAACCTGCGGAAAATGGTAGCGATGGCGGCTGGGCCGAGTGGGTGTCTGGTGCCGGCGTTTG
GGCTACGGTTGTTGTTGGCGACTGTGCTTCAAGCGGTGTCTGCTTTTGGGGCAGAGTTTTCATC
GGAGGCATGCAGAGAGTTAGGCTTTTCTAGCAACTTGCTTTGCAGCTCTTGTGATCTTCTCGGA
CAGTTCAACCTGCTTCAGCTGGATCCTGATTGCAGAGGATGCTGTCAGGAGGAAGCACAATTTG
AAACCAAAAAGCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAGGTTCCC
TCAAGTCCAAGTATGTCCGTGGTTCAGACCCTGTATTAAAGCTTTTGGACGACAATGGGAACAT
TGCTGAAGAACTGAGCATTCTCAAATGGAACACAGACAGTGTAGAAGAATTCCTGAGTGAAAAG
TTGGAACGCATATAAATCTTGCTTAAATTTTGTCCTATCCTTTTGTTACCTTATCAAATGAAAT
ATTACAGCACCTAGAAAATAATTTAGTTTTGCTTGCTTCCATTGATCAGTCTTTTACTTGAGGC
ATTAAATATCTAATTAAATCGTGAAATGGCAGTATAGTCCATGATATCTAAGGAGTTGGCAAGC
TTAACAAAACCCATTTTTTATAAATGTCCATCCTCCTGCATTTGTTGATACCACTAACAAAATG
CTTTGTAACAGACTTGCGGTTAATTATGCAAATGATAGTTTGTGATAATTGGTCCAGTTTTACG
AACAACAGATTTCTAAATTAGAGAGGTTAACAAGACAGATGATTACTATGCCTCATGTGCTGTG
TGCTCTTTGAAAGGAATGACAGCAGACTACAAAGCAAATAAGATATACTGAGCCTCAACAGATT
GCCTGCTCCTCAGAGTCTCTCCTATTTTTGTATTACCCAGCTTTCTTTTTAATACAAATGTTAT
TTATAGTTTACAATGAATGCACTGCATAAAAACTTTGTAGCTTCATTATTGTAAAACATATTCA
AGATCCTACAGTAAGAGTGAAACATTCACAAAGATTTGCGTTAATGAAGACTACACAGAAAACC
TTTCTAGGGATTTGTGTGGATCAGATACATACTTGGCAAATTTTTGAGTTTTACATTCTTACAG
AAAAGTCCATTTAAAAGTGATCATTTGTAAGACCAAAATATAAATAAAAAGTTTCAAAAATCTA
TCTGAATTTGGAATTCTTCTGGTTTGTTCTTTCATGTTTAAAAATGATGTTTTTCAATGCATTT
TTTTCATGTAAGCCCTTTTTTTAGCCAAAATGTAAAAATGGCTGTAATATTTAAAACTTATAAC
ATCTTATTGTTGGTAATAGTGCTTTATATTTGTCTGATTTTATTTTTCAAAGTTTTTTCATTTA
TGAACACATTTTCATTGGTATATTATTTAAGGAATATCTCTTGATATAGAATTTTTATATTAAA
AATGATTTTTCTTTGCTTAA

hide sequence

RefSeq Acc Id:

NR_144512

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	86,862,445 - 86,914,475 (-)	NCBI
T2T-CHM13v2.0	1	86,703,158 - 86,755,033 (-)	NCBI

Sequence:

show sequence

GTTTCCTCTGCCACAGAGCTCAATCAAGACGACATTCAATTGGGTAAACTTGGAGAAGAAGGCG
GGGCTAAAACTGGCGAAGGCGTGGCTTCTTGGCTGCTTGACGAAGTGTCGTGAATAAAAGAAAG
GAGACCGCAGAAGTAAAGAAGTGGGGAGTTTAGGTGTCTGCTTTTGGGGCAGAGTTTTCATCGG
AGGCATGCAGAGAGTTAGGCTTTTCTAGCAACTTGCTTTGCAGCTCTTGTGATCTTCTCGGACA
GTTCAACCTGCTTCAGCTGGATCCTGATTGCAGAGGATGCTGTCAGGAGGAAGCACAATTTGAA
ACCAAAAAGCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAGGTTCCCTC
AAGTCCAAGCTTTTGTTAGGAGTGATAAACCCAAACTGTTCAGAGGACTGCAAATCAAGTATGT
CCGTGGTTCAGACCCTGTATTAAAGCTTTTGGACGACAATGGGAACATTGCTGAAGAACTGAGC
ATTCTCAAATGGAACACAGACAGTGTAGAAGAATTCCTGAGTGAAAAGTTGGAACGCATATAAA
TCTTGCTTAAATTTTGTCCTATCCTTTTGTTACCTTATCAAATGAAATATTACAGCACCTAGAA
AATAATTTAGTTTTGCTTGCTTCCATTGATCAGTCTTTTACTTGAGGCATTAAATATCTAATTA
AATCGTGAAATGGCAGTATAGTCCATGATATCTAAGGAGTTGGCAAGCTTAACAAAACCCATTT
TTTATAAATGTCCATCCTCCTGCATTTGTTGATACCACTAACAAAATGCTTTGTAACAGACTTG
CGGTTAATTATGCAAATGATAGTTTGTGATAATTGGTCCAGTTTTACGAACAACAGATTTCTAA
ATTAGAGAGGTTAACAAGACAGATGATTACTATGCCTCATGTGCTGTGTGCTCTTTGAAAGGAA
TGACAGCAGACTACAAAGCAAATAAGATATACTGAGCCTCAACAGATTGCCTGCTCCTCAGAGT
CTCTCCTATTTTTGTATTACCCAGCTTTCTTTTTAATACAAATGTTATTTATAGTTTACAATGA
ATGCACTGCATAAAAACTTTGTAGCTTCATTATTGTAAAACATATTCAAGATCCTACAGTAAGA
GTGAAACATTCACAAAGATTTGCGTTAATGAAGACTACACAGAAAACCTTTCTAGGGATTTGTG
TGGATCAGATACATACTTGGCAAATTTTTGAGTTTTACATTCTTACAGAAAAGTCCATTTAAAA
GTGATCATTTGTAAGACCAAAATATAAATAAAAAGTTTCAAAAATCTATCTGAATTTGGAATTC
TTCTGGTTTGTTCTTTCATGTTTAAAAATGATGTTTTTCAATGCATTTTTTTCATGTAAGCCCT
TTTTTTAGCCAAAATGTAAAAATGGCTGTAATATTTAAAACTTATAACATCTTATTGTTGGTAA
TAGTGCTTTATATTTGTCTGATTTTATTTTTCAAAGTTTTTTCATTTATGAACACATTTTCATT
GGTATATTATTTAAGGAATATCTCTTGATATAGAATTTTTATATTAAAAATGATTTTTCTTTGC
TTAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_144513

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	86,862,445 - 86,914,577 (-)	NCBI
T2T-CHM13v2.0	1	86,703,158 - 86,755,135 (-)	NCBI

Sequence:

show sequence

GTACGCTGCTCGGCAACCAGAAGCCCCGCCCCTCCCCCCGTTCGGGTCCGCTTATTGGACGGAA
GAGCCCCTGCGCTTCGCTCTTGGTTCGGTTTACGGTTGGTTTCCTCTGCCACAGAGCTCAATCA
AGACGACATTCAATTGGGTGTCTGCTTTTGGGGCAGAGTTTTCATCGGAGGCATGCAGAGAGTT
AGGCTTTTCTAGCAACTTGCTTTGCAGCTCTTGTGATCTTCTCGGACAGTTCAACCTGCTTCAG
CTGGATCCTGATTGCAGAGGATGCTGTCAGGAGGAAGCACAATTTGAAACCAAAAAGCTGTATG
CAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAGGTTCCCTCAAGTCCAAGCTTTTGT
TAGGAGTGATAAACCCAAACTGTTCAGAGGACTGCAAATCAAGTATGTCCGTGGTTCAGACCCT
GTATTAAAGCTTTTGGACGACAATGGGAACATTGCTGAAGAACTGAGCATTCTCAAATGGAACA
CAGACAGTGTAGAAGAATTCCTGAGTGAAAAGTTGGAACGCATATAAATCTTGCTTAAATTTTG
TCCTATCCTTTTGTTACCTTATCAAATGAAATATTACAGCACCTAGAAAATAATTTAGTTTTGC
TTGCTTCCATTGATCAGTCTTTTACTTGAGGCATTAAATATCTAATTAAATCGTGAAATGGCAG
TATAGTCCATGATATCTAAGGAGTTGGCAAGCTTAACAAAACCCATTTTTTATAAATGTCCATC
CTCCTGCATTTGTTGATACCACTAACAAAATGCTTTGTAACAGACTTGCGGTTAATTATGCAAA
TGATAGTTTGTGATAATTGGTCCAGTTTTACGAACAACAGATTTCTAAATTAGAGAGGTTAACA
AGACAGATGATTACTATGCCTCATGTGCTGTGTGCTCTTTGAAAGGAATGACAGCAGACTACAA
AGCAAATAAGATATACTGAGCCTCAACAGATTGCCTGCTCCTCAGAGTCTCTCCTATTTTTGTA
TTACCCAGCTTTCTTTTTAATACAAATGTTATTTATAGTTTACAATGAATGCACTGCATAAAAA
CTTTGTAGCTTCATTATTGTAAAACATATTCAAGATCCTACAGTAAGAGTGAAACATTCACAAA
GATTTGCGTTAATGAAGACTACACAGAAAACCTTTCTAGGGATTTGTGTGGATCAGATACATAC
TTGGCAAATTTTTGAGTTTTACATTCTTACAGAAAAGTCCATTTAAAAGTGATCATTTGTAAGA
CCAAAATATAAATAAAAAGTTTCAAAAATCTATCTGAATTTGGAATTCTTCTGGTTTGTTCTTT
CATGTTTAAAAATGATGTTTTTCAATGCATTTTTTTCATGTAAGCCCTTTTTTTAGCCAAAATG
TAAAAATGGCTGTAATATTTAAAACTTATAACATCTTATTGTTGGTAATAGTGCTTTATATTTG
TCTGATTTTATTTTTCAAAGTTTTTTCATTTATGAACACATTTTCATTGGTATATTATTTAAGG
AATATCTCTTGATATAGAATTTTTATATTAAAAATGATTTTTCTTTGCTTAAAAAAAAAAAAAA
AAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_004252	(Get FASTA)	NCBI Sequence Viewer
	NP_976086	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC15478	(Get FASTA)	NCBI Sequence Viewer
	AAF78966	(Get FASTA)	NCBI Sequence Viewer
	AAG31556	(Get FASTA)	NCBI Sequence Viewer
	AAG31557	(Get FASTA)	NCBI Sequence Viewer
	AAH05294	(Get FASTA)	NCBI Sequence Viewer
	AAH16359	(Get FASTA)	NCBI Sequence Viewer
	AAH21697	(Get FASTA)	NCBI Sequence Viewer
	CAJ18323	(Get FASTA)	NCBI Sequence Viewer
	EAW73176	(Get FASTA)	NCBI Sequence Viewer
	EAW73177	(Get FASTA)	NCBI Sequence Viewer
	EAW73178	(Get FASTA)	NCBI Sequence Viewer
	EAW73179	(Get FASTA)	NCBI Sequence Viewer
	EAW73180	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000328729
	ENSP00000328729.6
	ENSP00000359585
	ENSP00000359585.2
	ENSP00000383810.4
	ENSP00000488294.1
	ENSP00000488471.1
	ENSP00000497584.1
GenBank Protein	O60613	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_976086 ⟸ NM_203341
- Peptide Label:	isoform 2 precursor
- UniProtKB:	A0A3B3IT39 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVAMAAGPSGCLVPAFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLL QLDPDCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFPQVQVCPWFRPCIKAFGRQWEHC hide sequence

RefSeq Acc Id:	NP_004252 ⟸ NM_004261
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q9GZW0 (UniProtKB/Swiss-Prot), Q9BS64 (UniProtKB/Swiss-Prot), Q8WU00 (UniProtKB/Swiss-Prot), Q4GZG7 (UniProtKB/Swiss-Prot), A0A0B4J1S4 (UniProtKB/Swiss-Prot), Q9NR01 (UniProtKB/Swiss-Prot), O60613 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVAMAAGPSGCLVPAFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLL QLDPDCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSD PVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI hide sequence

RefSeq Acc Id:

ENSP00000328729 ⟸ ENST00000331835

RefSeq Acc Id:

ENSP00000497584 ⟸ ENST00000648872

RefSeq Acc Id:

ENSP00000359585 ⟸ ENST00000370554

RefSeq Acc Id:

ENSP00000488471 ⟸ ENST00000467557

RefSeq Acc Id:

ENSP00000383810 ⟸ ENST00000401030

RefSeq Acc Id:

ENSP00000481113 ⟸ ENST00000611507

RefSeq Acc Id:

ENSP00000488294 ⟸ ENST00000497861

RefSeq Acc Id:

ENSP00000484190 ⟸ ENST00000616787

Protein Domains

Selenoprotein F/M

Promoters

RGD ID:

6856092

Promoter ID:

EPDNEW_H1211

Type:

initiation region

Name:

SEP15_1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H1212

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	86,914,125 - 86,914,185	EPDNEW

RGD ID:

6856094

Promoter ID:

EPDNEW_H1212

Type:

initiation region

Name:

SEP15_2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H1211

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	86,914,370 - 86,914,430	EPDNEW

RGD ID:

6785378

Promoter ID:

HG_KWN:3512

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000370551, ENST00000370553, NM_004261, NM_203341, OTTHUMT00000023520, OTTHUMT00000023521, OTTHUMT00000028279, UC001DMD.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	1	87,151,986 - 87,153,917 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:17705	AgrOrtholog
COSMIC	SELENOF	COSMIC
Ensembl Genes	ENSG00000183291	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000331835	ENTREZGENE
	ENST00000331835.10	UniProtKB/Swiss-Prot
	ENST00000370554	ENTREZGENE
	ENST00000370554.5	UniProtKB/Swiss-Prot
	ENST00000401030.4	UniProtKB/TrEMBL
	ENST00000467557.1	UniProtKB/TrEMBL
	ENST00000497861.5	UniProtKB/TrEMBL
	ENST00000648872.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.30.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx	ENSG00000183291	GTEx
HGNC ID	HGNC:17705	ENTREZGENE
Human Proteome Map	SELENOF	Human Proteome Map
InterPro	Sep15/SelM_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sep15_SelM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sep15_SelM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Thioredoxin-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:9403	UniProtKB/Swiss-Prot
NCBI Gene	9403	ENTREZGENE
OMIM	606254	OMIM
PANTHER	PTHR13077	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SELENOPROTEIN F	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Sep15_SelM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA166181629	PharmGKB
Superfamily-SCOP	SSF52833	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0B4J1S4	ENTREZGENE
	A0A0J9YX89_HUMAN	UniProtKB/TrEMBL
	A0A0J9YXM9_HUMAN	UniProtKB/TrEMBL
	A0A3B3IT39	ENTREZGENE, UniProtKB/TrEMBL
	A8MZD0_HUMAN	UniProtKB/TrEMBL
	O60613	ENTREZGENE
	Q4GZG7	ENTREZGENE
	Q8WU00	ENTREZGENE
	Q9BS64	ENTREZGENE
	Q9GZW0	ENTREZGENE
	Q9NR01	ENTREZGENE
	SEP15_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	A0A0B4J1S4	UniProtKB/Swiss-Prot
	Q4GZG7	UniProtKB/Swiss-Prot
	Q8WU00	UniProtKB/Swiss-Prot
	Q9BS64	UniProtKB/Swiss-Prot
	Q9GZW0	UniProtKB/Swiss-Prot
	Q9NR01	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-09-27	SELENOF	selenoprotein F	SEP15	15 kDa selenoprotein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar