PDE4D (phosphodiesterase 4D) - Rat Genome Database

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Gene: PDE4D (phosphodiesterase 4D) Homo sapiens
Analyze
Symbol: PDE4D
Name: phosphodiesterase 4D
RGD ID: 736102
HGNC Page HGNC
Description: Enables several functions, including 3',5'-cyclic-AMP phosphodiesterase activity; ATPase binding activity; and cAMP binding activity. Involved in several processes, including cAMP catabolic process; cellular response to organonitrogen compound; and positive regulation of cytokine production. Located in cytosol and plasma membrane. Part of calcium channel complex. Implicated in acrodysostosis.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ACRDYS2; cAMP-specific 3',5'-cyclic phosphodiesterase 4D; cAMP-specific phosphodiesterase 4D; cAMP-specific phosphodiesterase PDE4D6; DKFZp686M11213; DPDE3; dunce-like phosphodiesterase E3; FLJ97311; HSPDE4D; PDE43; PDE4DN2; phosphodiesterase 4D, cAMP-specific (dunce; phosphodiesterase 4D, cAMP-specific (phosphodiesterase E3 dunce homolog, Drosophila); phosphodiesterase E3 dunce homolog; STRK1; testicular tissue protein Li 136
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl558,969,038 - 60,522,120 (-)EnsemblGRCh38hg38GRCh38
GRCh38558,969,038 - 60,524,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37558,264,865 - 59,792,113 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36558,300,622 - 59,225,378 (-)NCBINCBI36hg18NCBI36
Build 34558,302,467 - 58,918,032NCBI
Celera555,205,298 - 56,725,032 (-)NCBI
Cytogenetic Map5q11.2-q12.1NCBI
HuRef555,222,770 - 56,741,723 (-)ENTREZGENEHuRef
CHM1_1558,265,111 - 59,783,530 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrobenzenesulfonic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-(hydroxymethyl)cytosine  (ISO)
acetamide  (ISO)
acrolein  (EXP)
aflatoxin B1  (EXP,ISO)
aflatoxin B2  (EXP)
all-trans-retinoic acid  (EXP)
alpha-pinene  (EXP)
amphetamine  (ISO)
aristolochic acid  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (EXP)
atrazine  (EXP)
benzene  (EXP)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
butanal  (EXP)
C60 fullerene  (ISO)
carbon nanotube  (EXP,ISO)
chlordecone  (ISO)
chromium(6+)  (EXP)
cisplatin  (EXP)
cobalt dichloride  (EXP)
colforsin daropate hydrochloride  (EXP)
copper(II) sulfate  (EXP)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
diarsenic trioxide  (EXP)
dichlorine  (ISO)
dichloroacetic acid  (ISO)
dioxygen  (ISO)
dorsomorphin  (EXP)
endosulfan  (ISO)
ethanol  (ISO)
fluoxetine  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (EXP)
leflunomide  (EXP)
mercury dibromide  (EXP)
methamphetamine  (EXP)
methylmercury chloride  (EXP)
mitoxantrone  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
nickel sulfate  (EXP)
O-methyleugenol  (EXP)
ozone  (EXP,ISO)
panobinostat  (EXP)
paracetamol  (EXP)
pentanal  (EXP)
phenylmercury acetate  (EXP)
picrotoxin  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
raloxifene  (EXP)
rifampicin  (EXP)
roflumilast  (EXP)
SB 431542  (EXP)
sodium arsenite  (EXP)
sodium fluoride  (ISO)
temozolomide  (EXP)
testosterone enanthate  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
torcetrapib  (EXP)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
tunicamycin  (ISO)
valproic acid  (EXP)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)
vorinostat  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adenylate cyclase-activating adrenergic receptor signaling pathway involved in positive regulation of heart rate  (IC)
adrenergic receptor signaling pathway  (ISS)
aging  (ISO)
cAMP catabolic process  (IBA,IDA,IEA)
cAMP-mediated signaling  (NAS)
cellular protein-containing complex assembly  (ISO)
cellular response to cAMP  (IDA)
cellular response to epinephrine stimulus  (IDA)
cellular response to lipopolysaccharide  (ISO)
establishment of endothelial barrier  (ISS)
leukocyte migration  (ISO)
lung development  (ISO)
memory  (ISO)
multicellular organism growth  (ISO)
negative regulation of cAMP-mediated signaling  (IBA,IMP)
negative regulation of heart contraction  (ISS)
negative regulation of peptidyl-serine phosphorylation  (ISS)
negative regulation of relaxation of cardiac muscle  (ISS)
neutrophil chemotaxis  (ISO)
positive regulation of cell-cell adhesion  (ISO)
positive regulation of interferon-gamma production  (IMP)
positive regulation of interleukin-2 production  (IMP)
positive regulation of interleukin-5 production  (IMP)
positive regulation of protein phosphorylation  (ISO)
positive regulation of smooth muscle cell migration  (ISO)
positive regulation of smooth muscle cell proliferation  (ISO)
regulation of cAMP-mediated signaling  (ISO)
regulation of cardiac muscle cell contraction  (IBA,ISO,ISS)
regulation of cell communication by electrical coupling involved in cardiac conduction  (IC)
regulation of G protein-coupled receptor signaling pathway  (ISO)
regulation of heart rate  (ISS)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (ISS)
regulation of ryanodine-sensitive calcium-release channel activity  (ISS)
regulation of signaling receptor activity  (ISS)
signal transduction  (IBA,IEA)
smooth muscle contraction  (ISO)
T cell receptor signaling pathway  (IMP)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal dental enamel morphology  (IAGP)
Abnormal form of the vertebral bodies  (IAGP)
Abnormality of female external genitalia  (IAGP)
Abnormality of immune system physiology  (IAGP)
Abnormality of the nail  (IAGP)
Absent/hypoplastic paranasal sinuses  (IAGP)
Accelerated skeletal maturation  (IAGP)
Anteverted nares  (IAGP)
Autism  (IAGP)
Autistic behavior  (IAGP)
Autosomal dominant inheritance  (IAGP)
Bilateral coxa valga  (IAGP)
Blue irides  (IAGP)
Brachycephaly  (IAGP)
Brachydactyly  (IAGP)
Broad face  (IAGP)
Broad foot  (IAGP)
Broad hallux  (IAGP)
Broad metacarpals  (IAGP)
Broad metatarsal  (IAGP)
Broad phalanx  (IAGP)
Caudal interpedicular narrowing  (IAGP)
Cerebral venous thrombosis  (IAGP)
Coarse facial features  (IAGP)
Cone-shaped epiphysis  (IAGP)
Congenital craniofacial dysostosis  (IAGP)
Congenital hypothyroidism  (IAGP)
Congenital onset  (IAGP)
Cryptorchidism  (IAGP)
Decreased response to growth hormone stimuation test  (IAGP)
Delayed eruption of teeth  (IAGP)
Delayed speech and language development  (IAGP)
Depressed nasal bridge  (IAGP)
Depressed nasal ridge  (IAGP)
Diabetes mellitus  (IAGP)
Elevated calcitonin  (IAGP)
Elevated circulating parathyroid hormone level  (IAGP)
Epicanthus  (IAGP)
Epiphyseal stippling  (IAGP)
Esophageal atresia  (IAGP)
Esotropia  (IAGP)
Fair hair  (IAGP)
Flat face  (IAGP)
Frontal bossing  (IAGP)
Global developmental delay  (IAGP)
Hearing impairment  (IAGP)
Hyperactivity  (IAGP)
Hypermetropia  (IAGP)
Hyperphosphatemia  (IAGP)
Hypertelorism  (IAGP)
Hypocalcemia  (IAGP)
Hypogonadism  (IAGP)
Hypoplasia of the maxilla  (IAGP)
Hypoplasia of the nasal bone  (IAGP)
Hypoplasia of the radius  (IAGP)
Hypoplasia of the ulna  (IAGP)
Hypoplastic vertebral bodies  (IAGP)
Hypospadias  (IAGP)
Hypotelorism  (IAGP)
Hypotension  (IAGP)
Increased intracranial pressure  (IAGP)
Intellectual disability  (IAGP)
Intrauterine growth retardation  (IAGP)
Irregular menstruation  (IAGP)
Irregular vertebral endplates  (IAGP)
Joint laxity  (IAGP)
Large forehead  (IAGP)
Long palpebral fissure  (IAGP)
Long philtrum  (IAGP)
Malar flattening  (IAGP)
Mandibular prognathia  (IAGP)
Melanocytic nevus  (IAGP)
Micrognathia  (IAGP)
Micromelia  (IAGP)
Midface retrusion  (IAGP)
Mild short stature  (IAGP)
Narrow palpebral fissure  (IAGP)
Narrow vertebral interpedicular distance  (IAGP)
Neonatal hypotonia  (IAGP)
Obesity  (IAGP)
Open bite  (IAGP)
Open mouth  (IAGP)
Peripheral neuropathy  (IAGP)
Pes planus  (IAGP)
Posteriorly rotated ears  (IAGP)
Postnatal growth retardation  (IAGP)
Prominent nasal tip  (IAGP)
Prominent nose  (IAGP)
Pseudohypoparathyroidism  (IAGP)
Ptosis  (IAGP)
Red hair  (IAGP)
Round face  (IAGP)
Scoliosis  (IAGP)
Seizure  (IAGP)
Short metacarpal  (IAGP)
Short metatarsal  (IAGP)
Short middle phalanx of finger  (IAGP)
Short nose  (IAGP)
Short phalanx of finger  (IAGP)
Short philtrum  (IAGP)
Short stature  (IAGP)
Short toe  (IAGP)
Specific learning disability  (IAGP)
Spinal canal stenosis  (IAGP)
Thickened calvaria  (IAGP)
Thin upper lip vermilion  (IAGP)
Upper limb undergrowth  (IAGP)
Visual impairment  (IAGP)
Wide nasal bridge  (IAGP)
References

Additional References at PubMed
PMID:2554303   PMID:7829101   PMID:8009369   PMID:8125310   PMID:8413254   PMID:8663227   PMID:8797812   PMID:9371713   PMID:9371714   PMID:9639573   PMID:10022832   PMID:10329691  
PMID:10571082   PMID:10828059   PMID:10913353   PMID:11134006   PMID:11156964   PMID:11516626   PMID:11833004   PMID:11839681   PMID:12121997   PMID:12193273   PMID:12387865   PMID:12399592  
PMID:12477932   PMID:12552097   PMID:12834813   PMID:12842049   PMID:14500724   PMID:14517535   PMID:14609333   PMID:14668322   PMID:15003452   PMID:15131123   PMID:15182229   PMID:15489334  
PMID:15611099   PMID:15731479   PMID:15752431   PMID:15861005   PMID:15938621   PMID:16020760   PMID:16030021   PMID:16130105   PMID:16162858   PMID:16166573   PMID:16177794   PMID:16213210  
PMID:16322495   PMID:16344560   PMID:16373644   PMID:16543535   PMID:16642035   PMID:16689683   PMID:16835261   PMID:16964243   PMID:16973330   PMID:17006457   PMID:17016624   PMID:17065074  
PMID:17081983   PMID:17088426   PMID:17135396   PMID:17288540   PMID:17353396   PMID:17404263   PMID:17594329   PMID:17620599   PMID:17655870   PMID:17667963   PMID:17673687   PMID:17884339  
PMID:17900862   PMID:17903308   PMID:17956250   PMID:18157711   PMID:18158110   PMID:18398440   PMID:18420948   PMID:18514160   PMID:18694398   PMID:18705898   PMID:18711446   PMID:18977990  
PMID:19056482   PMID:19196240   PMID:19246712   PMID:19251251   PMID:19252089   PMID:19282863   PMID:19399275   PMID:19417766   PMID:19424605   PMID:19426955   PMID:19578796   PMID:19608201  
PMID:19786079   PMID:19913121   PMID:19948975   PMID:19955404   PMID:20106966   PMID:20161734   PMID:20182758   PMID:20196770   PMID:20201926   PMID:20357438   PMID:20360068   PMID:20379614  
PMID:20503266   PMID:20540798   PMID:20628086   PMID:20634892   PMID:20647544   PMID:20664520   PMID:20732872   PMID:20734779   PMID:20816195   PMID:20819076   PMID:20837708   PMID:20952536  
PMID:21319273   PMID:21516116   PMID:21611147   PMID:21642993   PMID:21652625   PMID:21677445   PMID:21786629   PMID:21832049   PMID:21873635   PMID:21876611   PMID:21903937   PMID:21989204  
PMID:22045424   PMID:22274584   PMID:22464250   PMID:22464252   PMID:22558309   PMID:22610502   PMID:22771915   PMID:22863883   PMID:22882844   PMID:22908311   PMID:22975349   PMID:23033274  
PMID:23043190   PMID:23076369   PMID:23120769   PMID:23135027   PMID:23241943   PMID:23251661   PMID:23266473   PMID:23466835   PMID:23535729   PMID:23536305   PMID:23648065   PMID:23778321  
PMID:23786009   PMID:23799094   PMID:23806656   PMID:23852788   PMID:23863764   PMID:24142618   PMID:24203977   PMID:24365247   PMID:24485247   PMID:24657165   PMID:24705354   PMID:24732776  
PMID:24926854   PMID:25064455   PMID:25101859   PMID:25122068   PMID:25129146   PMID:25149359   PMID:25416956   PMID:25546709   PMID:25659891   PMID:25680530   PMID:25775568   PMID:26004910  
PMID:26181301   PMID:26211680   PMID:26257302   PMID:26345966   PMID:26371509   PMID:26496610   PMID:26521189   PMID:26575822   PMID:26658094   PMID:26671126   PMID:26763073   PMID:26782593  
PMID:27383270   PMID:27432908   PMID:27503909   PMID:27542412   PMID:27546041   PMID:27595237   PMID:27683107   PMID:27759001   PMID:28069443   PMID:28092671   PMID:28191858   PMID:28225001  
PMID:28514442   PMID:28515031   PMID:28562233   PMID:28611215   PMID:28753810   PMID:29016851   PMID:29117863   PMID:29234926   PMID:29499646   PMID:29507755   PMID:29783161   PMID:30202044  
PMID:30485936   PMID:30582852   PMID:30655611   PMID:30672438   PMID:31138891   PMID:31324945   PMID:31469783   PMID:31653176   PMID:32093112   PMID:32296183   PMID:32460013   PMID:33005030  


Genomics

Comparative Map Data
PDE4D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl558,969,038 - 60,522,120 (-)EnsemblGRCh38hg38GRCh38
GRCh38558,969,038 - 60,524,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37558,264,865 - 59,792,113 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36558,300,622 - 59,225,378 (-)NCBINCBI36hg18NCBI36
Build 34558,302,467 - 58,918,032NCBI
Celera555,205,298 - 56,725,032 (-)NCBI
Cytogenetic Map5q11.2-q12.1NCBI
HuRef555,222,770 - 56,741,723 (-)ENTREZGENEHuRef
CHM1_1558,265,111 - 59,783,530 (-)NCBICHM1_1
Pde4d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913108,790,711 - 110,092,503 (+)NCBIGRCm39mm39
GRCm39 Ensembl13108,586,482 - 110,089,995 (+)Ensembl
GRCm3813108,654,177 - 109,955,969 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13108,449,948 - 109,953,461 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713109,444,371 - 110,741,682 (+)NCBIGRCm37mm9NCBIm37
MGSCv3613109,775,041 - 111,072,352 (+)NCBImm8
Celera13112,976,414 - 114,285,878 (+)NCBICelera
Cytogenetic Map13D2.1NCBI
cM Map1359.69NCBI
Pde4d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2240,014,933 - 41,529,190 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl240,019,933 - 41,525,884 (+)Ensembl
Rnor_6.0240,219,999 - 41,468,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl240,554,146 - 41,464,264 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0259,292,847 - 59,860,049 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0260,035,104 - 60,521,358 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4240,196,097 - 41,311,012 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1241,035,303 - 41,231,381NCBI
Celera236,258,764 - 37,353,786 (+)NCBICelera
Cytogenetic Map2q14NCBI
Pde4d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554468,211,877 - 9,252,653 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554467,914,326 - 9,252,527 (+)NCBIChiLan1.0ChiLan1.0
PDE4D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1555,749,248 - 56,675,724 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl555,749,214 - 56,670,111 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0553,510,287 - 55,039,181 (+)NCBIMhudiblu_PPA_v0panPan3
PDE4D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1245,843,767 - 47,245,263 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl245,846,294 - 46,949,912 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha242,920,230 - 44,321,074 (-)NCBI
ROS_Cfam_1.0246,331,498 - 47,722,409 (-)NCBI
UMICH_Zoey_3.1243,375,010 - 44,793,218 (-)NCBI
UNSW_CanFamBas_1.0244,204,482 - 45,049,239 (-)NCBI
UU_Cfam_GSD_1.0245,031,308 - 46,431,653 (-)NCBI
Pde4d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213199,501,304 - 200,299,009 (+)NCBI
SpeTri2.0NW_0049364808,123,437 - 9,235,586 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDE4D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1637,897,300 - 39,154,586 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11637,897,300 - 39,406,534 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21640,637,293 - 40,680,968 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103221883
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1455,148,012 - 56,665,684 (-)NCBI
ChlSab1.1 Ensembl455,153,563 - 55,390,027 (-)Ensembl
Vero_WHO_p1.0NW_0236660494,132,259 - 4,425,088 (-)NCBI

Position Markers
D5S2500  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,697,193 - 58,697,344UniSTSGRCh37
Build 36558,732,950 - 58,733,101RGDNCBI36
Celera555,637,511 - 55,637,662RGD
Cytogenetic Map5q12UniSTS
HuRef555,654,940 - 55,655,111UniSTS
Marshfield Genetic Map569.23RGD
Marshfield Genetic Map569.23UniSTS
deCODE Assembly Map575.18UniSTS
Whitehead-RH Map5193.8UniSTS
Whitehead-YAC Contig Map5 UniSTS
D5S2071  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,210,612 - 59,210,868UniSTSGRCh37
Build 36559,246,369 - 59,246,625RGDNCBI36
Celera556,150,763 - 56,151,019RGD
Cytogenetic Map5q12UniSTS
HuRef556,168,342 - 56,168,604UniSTS
Marshfield Genetic Map569.23RGD
Marshfield Genetic Map569.23UniSTS
Genethon Genetic Map569.7UniSTS
D5S2091  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,622,790 - 58,623,022UniSTSGRCh37
Build 36558,658,547 - 58,658,779RGDNCBI36
Celera555,563,112 - 55,563,338RGD
Cytogenetic Map5q12UniSTS
HuRef555,580,553 - 55,580,779UniSTS
Marshfield Genetic Map569.23UniSTS
Marshfield Genetic Map569.23RGD
Genethon Genetic Map569.8UniSTS
deCODE Assembly Map575.18UniSTS
D5S2080  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,028,190 - 59,028,448UniSTSGRCh37
Build 36559,063,947 - 59,064,205RGDNCBI36
Celera555,968,453 - 55,968,717RGD
Cytogenetic Map5q12UniSTS
HuRef555,985,896 - 55,986,160UniSTS
Marshfield Genetic Map569.23RGD
Marshfield Genetic Map569.23UniSTS
Genethon Genetic Map570.0UniSTS
deCODE Assembly Map575.37UniSTS
Whitehead-YAC Contig Map5 UniSTS
D5S468  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,511,360 - 58,511,459UniSTSGRCh37
Build 36558,547,117 - 58,547,216RGDNCBI36
Celera555,451,691 - 55,451,790RGD
Cytogenetic Map5q12UniSTS
HuRef555,469,075 - 55,469,174UniSTS
Marshfield Genetic Map569.23UniSTS
Marshfield Genetic Map569.23RGD
Genethon Genetic Map571.2UniSTS
deCODE Assembly Map575.18UniSTS
D5S1474  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37561,309,840 - 61,310,089UniSTSGRCh37
Build 36561,345,597 - 61,345,846RGDNCBI36
Celera558,305,746 - 58,305,995RGD
Cytogenetic Map5q12UniSTS
HuRef558,266,009 - 58,266,262UniSTS
Marshfield Genetic Map569.23RGD
Marshfield Genetic Map569.23UniSTS
deCODE Assembly Map576.58UniSTS
Stanford-G3 RH Map52258.0UniSTS
Whitehead-YAC Contig Map5 UniSTS
NCBI RH Map5277.7UniSTS
D5S431  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,800,700 - 58,800,880UniSTSGRCh37
Build 36558,836,457 - 58,836,637RGDNCBI36
Celera555,741,027 - 55,741,207RGD
Cytogenetic Map5q12UniSTS
HuRef555,758,449 - 55,758,621UniSTS
Marshfield Genetic Map569.23RGD
Marshfield Genetic Map569.23UniSTS
Genethon Genetic Map570.0UniSTS
deCODE Assembly Map575.18UniSTS
Whitehead-YAC Contig Map5 UniSTS
D5S398  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37557,568,994 - 57,569,106UniSTSGRCh37
GRCh37557,569,002 - 57,569,175UniSTSGRCh37
Build 36557,604,759 - 57,604,932RGDNCBI36
Celera554,513,611 - 54,513,792RGD
Celera554,513,603 - 54,513,723UniSTS
HuRef554,531,943 - 54,532,124UniSTS
HuRef554,531,935 - 54,532,055UniSTS
Marshfield Genetic Map568.03RGD
Genethon Genetic Map568.4UniSTS
deCODE Assembly Map574.18UniSTS
Stanford-G3 RH Map52123.0UniSTS
GeneMap99-GB4 RH Map5281.29UniSTS
Whitehead-YAC Contig Map5 UniSTS
NCBI RH Map5265.6UniSTS
GeneMap99-G3 RH Map52118.0UniSTS
D4S393  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374162,521,286 - 162,521,391UniSTSGRCh37
GRCh37558,614,952 - 58,615,177UniSTSGRCh37
GRCh374162,521,282 - 162,521,391UniSTSGRCh37
Build 364162,740,736 - 162,740,841RGDNCBI36
Celera4159,853,255 - 159,853,360RGD
Celera555,555,274 - 55,555,499UniSTS
Celera4159,853,251 - 159,853,360UniSTS
Cytogenetic Map5q12UniSTS
HuRef555,572,713 - 55,572,940UniSTS
HuRef4158,273,880 - 158,273,987UniSTS
HuRef4158,273,884 - 158,273,987UniSTS
Marshfield Genetic Map569.23UniSTS
Marshfield Genetic Map4161.91RGD
Genethon Genetic Map569.9UniSTS
TNG Radiation Hybrid Map496674.0UniSTS
deCODE Assembly Map575.18UniSTS
deCODE Assembly Map4155.67UniSTS
GeneMap99-GB4 RH Map4646.19UniSTS
Whitehead-YAC Contig Map4 UniSTS
GeneMap99-G3 RH Map48776.0UniSTS
RH65738  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,935,195 - 58,935,324UniSTSGRCh37
Build 36558,970,952 - 58,971,081RGDNCBI36
Celera555,875,450 - 55,875,579RGD
Cytogenetic Map5q12UniSTS
HuRef555,892,891 - 55,893,020UniSTS
GeneMap99-GB4 RH Map5292.81UniSTS
L28248  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,212,075 - 59,212,236UniSTSGRCh37
Build 36559,247,832 - 59,247,993RGDNCBI36
Celera556,152,226 - 56,152,387RGD
Cytogenetic Map5q12UniSTS
HuRef556,169,811 - 56,169,972UniSTS
L28370  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,136,404 - 59,136,652UniSTSGRCh37
Build 36559,172,161 - 59,172,409RGDNCBI36
Celera556,076,571 - 56,076,819RGD
Cytogenetic Map5q12UniSTS
HuRef556,094,138 - 56,094,386UniSTS
SHGC-14303  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,355,120 - 59,355,225UniSTSGRCh37
Build 36559,390,877 - 59,390,982RGDNCBI36
Celera556,295,307 - 56,295,412RGD
Cytogenetic Map5q12UniSTS
HuRef556,313,315 - 56,313,420UniSTS
TNG Radiation Hybrid Map526551.0UniSTS
Stanford-G3 RH Map52165.0UniSTS
NCBI RH Map5269.6UniSTS
D5S2376  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,270,112 - 58,270,430UniSTSGRCh37
Build 36558,305,869 - 58,306,187RGDNCBI36
Celera555,210,553 - 55,210,871RGD
Cytogenetic Map5q12UniSTS
HuRef555,228,021 - 55,228,335UniSTS
Stanford-G3 RH Map52141.0UniSTS
NCBI RH Map5267.3UniSTS
GeneMap99-G3 RH Map52136.0UniSTS
RH36510  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,498,406 - 58,498,607UniSTSGRCh37
Build 36558,534,163 - 58,534,364RGDNCBI36
Celera555,438,738 - 55,438,939RGD
Cytogenetic Map5q12UniSTS
HuRef555,456,130 - 55,456,331UniSTS
GeneMap99-GB4 RH Map5290.97UniSTS
D5S1765  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,503,327 - 59,503,527UniSTSGRCh37
Build 36559,539,084 - 59,539,284RGDNCBI36
Celera556,443,532 - 56,443,732RGD
Cytogenetic Map5q12UniSTS
HuRef556,461,237 - 56,461,437UniSTS
Whitehead-RH Map5200.5UniSTS
Whitehead-YAC Contig Map5 UniSTS
RH102705  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,060,939 - 59,061,095UniSTSGRCh37
Build 36559,096,696 - 59,096,852RGDNCBI36
Celera556,001,101 - 56,001,257RGD
Cytogenetic Map5q12UniSTS
HuRef556,018,655 - 56,018,811UniSTS
GeneMap99-GB4 RH Map5266.3UniSTS
RH103654  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,959,958 - 58,960,142UniSTSGRCh37
Build 36558,995,715 - 58,995,899RGDNCBI36
Celera555,900,223 - 55,900,407RGD
Cytogenetic Map5q12UniSTS
HuRef555,917,667 - 55,917,851UniSTS
GeneMap99-GB4 RH Map5295.39UniSTS
SHGC-82787  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,724,375 - 59,724,721UniSTSGRCh37
Build 36559,760,132 - 59,760,478RGDNCBI36
Celera556,665,489 - 56,665,835RGD
Cytogenetic Map5q12UniSTS
HuRef556,682,166 - 56,682,512UniSTS
TNG Radiation Hybrid Map526800.0UniSTS
SHGC-79827  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,564,048 - 58,564,241UniSTSGRCh37
Build 36558,599,805 - 58,599,998RGDNCBI36
Celera555,504,370 - 55,504,563RGD
Cytogenetic Map5q12UniSTS
HuRef555,521,810 - 55,522,003UniSTS
TNG Radiation Hybrid Map526252.0UniSTS
RH120042  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,605,333 - 59,605,604UniSTSGRCh37
Build 36559,641,090 - 59,641,361RGDNCBI36
Celera556,545,614 - 56,545,885RGD
Cytogenetic Map5q12UniSTS
HuRef556,563,232 - 56,563,503UniSTS
TNG Radiation Hybrid Map526707.0UniSTS
RH122905  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,151,575 - 59,151,870UniSTSGRCh37
Build 36559,187,332 - 59,187,627RGDNCBI36
Celera556,091,742 - 56,092,037RGD
Cytogenetic Map5q12UniSTS
HuRef556,109,310 - 56,109,605UniSTS
TNG Radiation Hybrid Map526470.0UniSTS
RH122480  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,901,660 - 58,901,990UniSTSGRCh37
Build 36558,937,417 - 58,937,747RGDNCBI36
Celera555,841,882 - 55,842,212RGD
Cytogenetic Map5q12UniSTS
HuRef555,859,332 - 55,859,662UniSTS
TNG Radiation Hybrid Map526369.0UniSTS
RH122295  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,018,720 - 59,019,016UniSTSGRCh37
Build 36559,054,477 - 59,054,773RGDNCBI36
Celera555,958,982 - 55,959,278RGD
Cytogenetic Map5q12UniSTS
HuRef555,976,429 - 55,976,725UniSTS
TNG Radiation Hybrid Map526409.0UniSTS
D5S524  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,798,459 - 58,798,640UniSTSGRCh37
Build 36558,834,216 - 58,834,397RGDNCBI36
Celera555,738,792 - 55,738,967RGD
Cytogenetic Map5q12UniSTS
HuRef555,756,187 - 55,756,362UniSTS
D5S1371  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,618,143 - 59,618,641UniSTSGRCh37
Build 36559,653,900 - 59,654,398RGDNCBI36
Celera556,559,153 - 56,559,654RGD
Cytogenetic Map5q12UniSTS
HuRef556,576,041 - 56,576,527UniSTS
D5S2201E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,919,875 - 58,920,017UniSTSGRCh37
Build 36558,955,632 - 58,955,774RGDNCBI36
Celera555,860,125 - 55,860,267RGD
Cytogenetic Map5q12UniSTS
HuRef555,877,567 - 55,877,709UniSTS
SHGC-104922  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,697,509 - 58,697,850UniSTSGRCh37
Build 36558,733,266 - 58,733,607RGDNCBI36
Celera555,637,827 - 55,638,168RGD
Cytogenetic Map5q12UniSTS
HuRef555,655,276 - 55,655,617UniSTS
TNG Radiation Hybrid Map526272.0UniSTS
SHGC-105334  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,957,670 - 58,957,979UniSTSGRCh37
Build 36558,993,427 - 58,993,736RGDNCBI36
Celera555,897,935 - 55,898,244RGD
Cytogenetic Map5q12UniSTS
HuRef555,915,379 - 55,915,688UniSTS
TNG Radiation Hybrid Map526395.0UniSTS
SHGC-142103  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,068,877 - 59,069,160UniSTSGRCh37
Build 36559,104,634 - 59,104,917RGDNCBI36
Celera556,009,048 - 56,009,331RGD
Cytogenetic Map5q12UniSTS
HuRef556,026,620 - 56,026,903UniSTS
TNG Radiation Hybrid Map526423.0UniSTS
SHGC-142295  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,259,078 - 59,259,387UniSTSGRCh37
Build 36559,294,835 - 59,295,144RGDNCBI36
Celera556,199,236 - 56,199,545RGD
Cytogenetic Map5q12UniSTS
HuRef556,216,848 - 56,217,157UniSTS
TNG Radiation Hybrid Map526510.0UniSTS
SHGC-142883  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,469,439 - 58,469,709UniSTSGRCh37
Build 36558,505,196 - 58,505,466RGDNCBI36
Celera555,409,685 - 55,409,955RGD
Cytogenetic Map5q12UniSTS
HuRef555,427,034 - 55,427,304UniSTS
TNG Radiation Hybrid Map526201.0UniSTS
SHGC-141822  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,733,282 - 59,733,595UniSTSGRCh37
Build 36559,769,039 - 59,769,352RGDNCBI36
Celera556,674,396 - 56,674,709RGD
Cytogenetic Map5q12UniSTS
HuRef556,691,081 - 56,691,394UniSTS
TNG Radiation Hybrid Map526797.0UniSTS
SHGC-146424  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,319,072 - 58,319,348UniSTSGRCh37
Build 36558,354,829 - 58,355,105RGDNCBI36
Celera555,259,452 - 55,259,726RGD
Cytogenetic Map5q12UniSTS
HuRef555,276,795 - 55,277,069UniSTS
TNG Radiation Hybrid Map526156.0UniSTS
SHGC-12987  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,670,280 - 59,670,378UniSTSGRCh37
Build 36559,706,037 - 59,706,135RGDNCBI36
Celera556,611,391 - 56,611,489RGD
Cytogenetic Map5q12UniSTS
HuRef556,628,171 - 56,628,269UniSTS
Stanford-G3 RH Map52184.0UniSTS
NCBI RH Map5271.4UniSTS
L31464  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,629,401 - 58,629,638UniSTSGRCh37
Build 36558,665,158 - 58,665,395RGDNCBI36
Celera555,569,717 - 55,569,954RGD
Cytogenetic Map5q12UniSTS
HuRef555,587,158 - 55,587,395UniSTS
L28295  
Human AssemblyChrPosition (strand)SourceJBrowse
Celera555,662,309 - 55,662,614RGD
Cytogenetic Map5q12UniSTS
HuRef555,679,780 - 55,680,085UniSTS
SHGC-79022  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,781,815 - 58,782,091UniSTSGRCh37
Build 36558,817,572 - 58,817,848RGDNCBI36
Celera555,722,149 - 55,722,425RGD
Cytogenetic Map5q12UniSTS
HuRef555,739,613 - 55,739,889UniSTS
TNG Radiation Hybrid Map526308.0UniSTS
SHGC-79957  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,530,744 - 59,531,014UniSTSGRCh37
Build 36559,566,501 - 59,566,771RGDNCBI36
Celera556,471,041 - 56,471,311RGD
Cytogenetic Map5q12UniSTS
HuRef556,488,657 - 56,488,927UniSTS
TNG Radiation Hybrid Map526742.0UniSTS
BB520687  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,480,519 - 59,480,632UniSTSGRCh37
Build 36559,516,276 - 59,516,389RGDNCBI36
Celera556,420,718 - 56,420,831RGD
HuRef556,438,413 - 56,438,526UniSTS
WI-16881  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,051,710 - 59,051,811UniSTSGRCh37
Build 36559,087,467 - 59,087,568RGDNCBI36
Celera555,991,981 - 55,992,082RGD
Cytogenetic Map5q12UniSTS
HuRef556,009,428 - 56,009,529UniSTS
GeneMap99-GB4 RH Map5292.97UniSTS
Whitehead-RH Map5195.0UniSTS
G16934  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,033,221 - 59,033,381UniSTSGRCh37
Build 36559,068,978 - 59,069,138RGDNCBI36
Celera555,973,490 - 55,973,650RGD
Cytogenetic Map5q12UniSTS
HuRef555,990,933 - 55,991,093UniSTS
D5S516E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,079,595 - 59,079,684UniSTSGRCh37
Build 36559,115,352 - 59,115,441RGDNCBI36
Celera556,019,768 - 56,019,857RGD
HuRef556,037,340 - 56,037,429UniSTS
D5S612  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,315,658 - 58,315,866UniSTSGRCh37
Build 36558,351,415 - 58,351,623RGDNCBI36
Celera555,256,042 - 55,256,246RGD
Cytogenetic Map5q12UniSTS
HuRef555,273,390 - 55,273,590UniSTS
G09934  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,570,802 - 59,570,997UniSTSGRCh37
Build 36559,606,559 - 59,606,754RGDNCBI36
Celera556,511,082 - 56,511,277RGD
Cytogenetic Map5q12UniSTS
HuRef556,528,697 - 56,528,892UniSTS
WI-16394  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,386,662 - 58,386,811UniSTSGRCh37
Build 36558,422,419 - 58,422,568RGDNCBI36
Celera555,327,020 - 55,327,169RGD
Cytogenetic Map5q12UniSTS
HuRef555,344,356 - 55,344,506UniSTS
GeneMap99-GB4 RH Map5290.97UniSTS
Whitehead-RH Map5192.2UniSTS
D7S1938  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37780,802,232 - 80,802,312UniSTSGRCh37
GRCh37558,987,965 - 58,988,045UniSTSGRCh37
Build 36559,023,722 - 59,023,802RGDNCBI36
Celera555,928,234 - 55,928,314RGD
Celera775,503,661 - 75,503,741UniSTS
Cytogenetic Map5q12UniSTS
HuRef775,406,393 - 75,406,473UniSTS
HuRef555,945,681 - 55,945,761UniSTS
CRA_TCAGchr7v2780,134,390 - 80,134,470UniSTS
RH36173  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,956,342 - 58,956,454UniSTSGRCh37
Build 36558,992,099 - 58,992,211RGDNCBI36
Celera555,896,604 - 55,896,716RGD
Cytogenetic Map5q12UniSTS
HuRef555,914,043 - 55,914,155UniSTS
GeneMap99-GB4 RH Map5292.28UniSTS
L28399  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,547,734 - 59,547,971UniSTSGRCh37
Build 36559,583,491 - 59,583,728RGDNCBI36
Celera556,488,020 - 56,488,257RGD
Cytogenetic Map5q12UniSTS
HuRef556,505,632 - 56,505,869UniSTS
STS-N30417  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,533,373 - 58,533,493UniSTSGRCh37
Build 36558,569,130 - 58,569,250RGDNCBI36
Celera555,473,705 - 55,473,825RGD
Cytogenetic Map5q12UniSTS
HuRef555,491,089 - 55,491,209UniSTS
GeneMap99-GB4 RH Map5264.93UniSTS
RH17464  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,265,029 - 58,265,178UniSTSGRCh37
Build 36558,300,786 - 58,300,935RGDNCBI36
Celera555,205,462 - 55,205,611RGD
Cytogenetic Map5q12UniSTS
HuRef555,222,934 - 55,223,083UniSTS
GeneMap99-GB4 RH Map5286.96UniSTS
UniSTS:50606  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37559,050,723 - 59,050,830UniSTSGRCh37
Build 36559,086,480 - 59,086,587RGDNCBI36
Celera555,990,994 - 55,991,101RGD
HuRef556,008,441 - 56,008,548UniSTS
RH48896  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,445,335 - 58,445,472UniSTSGRCh37
Build 36558,481,092 - 58,481,229RGDNCBI36
Celera555,385,696 - 55,385,833RGD
Cytogenetic Map5q12UniSTS
HuRef555,402,940 - 55,403,077UniSTS
GeneMap99-GB4 RH Map5290.42UniSTS
RH78454  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,265,031 - 58,265,168UniSTSGRCh37
Build 36558,300,788 - 58,300,925RGDNCBI36
Celera555,205,464 - 55,205,601RGD
Cytogenetic Map5q12UniSTS
HuRef555,222,936 - 55,223,073UniSTS
GeneMap99-GB4 RH Map5289.05UniSTS
RH69750  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,913,924 - 58,914,075UniSTSGRCh37
Build 36558,949,681 - 58,949,832RGDNCBI36
Celera555,854,174 - 55,854,325RGD
Cytogenetic Map5q12UniSTS
HuRef555,871,616 - 55,871,767UniSTS
GeneMap99-GB4 RH Map5294.48UniSTS
PDE4D_4140  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,269,576 - 58,270,373UniSTSGRCh37
Build 36558,305,333 - 58,306,130RGDNCBI36
Celera555,210,010 - 55,210,814RGD
HuRef555,227,478 - 55,228,278UniSTS
ha3092  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371092,170,885 - 92,171,219UniSTSGRCh37
GRCh37558,667,870 - 58,668,089UniSTSGRCh37
Celera555,608,186 - 55,608,405UniSTS
Celera1085,917,238 - 85,917,572UniSTS
HuRef1141,734,907 - 141,734,999UniSTS
HuRef555,625,620 - 55,625,839UniSTS
PDE4D  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37558,267,112 - 58,267,320UniSTSGRCh37
Celera555,207,547 - 55,207,755UniSTS
HuRef555,225,019 - 55,225,227UniSTS
D5S398  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5pUniSTS
Cytogenetic Map5q12UniSTS
Marshfield Genetic Map568.03UniSTS
Genethon Genetic Map568.4UniSTS
deCODE Assembly Map574.18UniSTS
Whitehead-YAC Contig Map5 UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7404
Count of miRNA genes:1441
Interacting mature miRNAs:1984
Transcripts:ENST00000309641, ENST00000317118, ENST00000340635, ENST00000358923, ENST00000360047, ENST00000405053, ENST00000405755, ENST00000502484, ENST00000502575, ENST00000503258, ENST00000503947, ENST00000504624, ENST00000505453, ENST00000505507, ENST00000506024, ENST00000506510, ENST00000507116, ENST00000509355, ENST00000509368, ENST00000511382, ENST00000512069, ENST00000514231, ENST00000514552, ENST00000515011, ENST00000515324, ENST00000515835, ENST00000546160
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 622 818 99 6 124 6 1411 853 102 90 247 440 2 80 1381 1
Low 1796 2083 1301 445 1659 287 2925 1305 3533 322 1129 1143 168 1124 1407 3
Below cutoff 16 85 326 171 154 172 20 34 84 7 80 28 4 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_027957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001104631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001165899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC008791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC012315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC020924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC026693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC027322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC034234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC092343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC109486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF012073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF012074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF536975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF536976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF536977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF536980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ250852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ250854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ250855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY245866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY245867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY388960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF197530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI492585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB230503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM005449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC876980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC876983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF510265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF510911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L20970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U79571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000309641   ⟹   ENSP00000308485
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,974,921 - 59,768,509 (-)Ensembl
RefSeq Acc Id: ENST00000317118   ⟹   ENSP00000321739
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,974,018 - 58,999,932 (-)Ensembl
RefSeq Acc Id: ENST00000340635   ⟹   ENSP00000345502
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,969,038 - 59,893,726 (-)Ensembl
RefSeq Acc Id: ENST00000358923   ⟹   ENSP00000351800
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,973,772 - 59,039,512 (-)Ensembl
RefSeq Acc Id: ENST00000360047   ⟹   ENSP00000353152
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,973,688 - 59,586,499 (-)Ensembl
RefSeq Acc Id: ENST00000405053
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,993,425 - 59,893,285 (-)Ensembl
RefSeq Acc Id: ENST00000405755   ⟹   ENSP00000384806
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,974,563 - 59,356,975 (-)Ensembl
RefSeq Acc Id: ENST00000502484   ⟹   ENSP00000423094
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,974,657 - 60,488,076 (-)Ensembl
RefSeq Acc Id: ENST00000502575   ⟹   ENSP00000425917
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,157,066 - 59,768,636 (-)Ensembl
RefSeq Acc Id: ENST00000503258   ⟹   ENSP00000425605
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,974,561 - 59,276,119 (-)Ensembl
RefSeq Acc Id: ENST00000504624
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,988,235 - 59,988,704 (-)Ensembl
RefSeq Acc Id: ENST00000505453   ⟹   ENSP00000421013
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,974,921 - 59,586,393 (-)Ensembl
RefSeq Acc Id: ENST00000505507   ⟹   ENSP00000425910
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,988,517 - 60,488,063 (-)Ensembl
RefSeq Acc Id: ENST00000506024
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,988,321 - 60,448,707 (-)Ensembl
RefSeq Acc Id: ENST00000506510
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,988,361 - 60,522,120 (-)Ensembl
RefSeq Acc Id: ENST00000507116   ⟹   ENSP00000424852
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,973,688 - 59,768,645 (-)Ensembl
RefSeq Acc Id: ENST00000509355
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,988,159 - 60,488,098 (-)Ensembl
RefSeq Acc Id: ENST00000509368   ⟹   ENSP00000423555
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,986,398 - 60,262,559 (-)Ensembl
RefSeq Acc Id: ENST00000511382
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,988,441 - 60,488,065 (-)Ensembl
RefSeq Acc Id: ENST00000512069
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,558,560 - 59,988,704 (-)Ensembl
RefSeq Acc Id: ENST00000514231
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,215,454 - 59,988,632 (-)Ensembl
RefSeq Acc Id: ENST00000514552   ⟹   ENSP00000421829
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,988,536 - 60,372,714 (-)Ensembl
RefSeq Acc Id: ENST00000515011
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,974,655 - 59,039,515 (-)Ensembl
RefSeq Acc Id: ENST00000515324
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,174,350 - 59,215,935 (-)Ensembl
RefSeq Acc Id: ENST00000515835   ⟹   ENSP00000424281
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,988,602 - 60,488,063 (-)Ensembl
RefSeq Acc Id: ENST00000546160   ⟹   ENSP00000442734
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,969,045 - 59,217,316 (-)Ensembl
RefSeq Acc Id: ENST00000621323
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,164,947 - 59,215,968 (-)Ensembl
RefSeq Acc Id: ENST00000636120   ⟹   ENSP00000490821
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl558,970,287 - 59,430,600 (-)Ensembl
RefSeq Acc Id: ENST00000638939   ⟹   ENSP00000492052
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl559,180,593 - 59,216,826 (-)Ensembl
RefSeq Acc Id: NM_001104631   ⟹   NP_001098101
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,893,726 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
Build 36558,300,622 - 59,225,378 (-)NCBI Archive
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 59,189,260 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001165899   ⟹   NP_001159371
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,488,065 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 59,783,530 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001197218   ⟹   NP_001184147
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,768,848 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 59,064,092 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001197219   ⟹   NP_001184148
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,356,970 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 58,652,458 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001197220   ⟹   NP_001184149
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,276,115 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 58,571,683 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001197221   ⟹   NP_001184150
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,039,476 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 58,335,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001197222   ⟹   NP_001184151
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,039,476 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 58,335,539 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001197223   ⟹   NP_001184152
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 58,999,898 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 58,295,950 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001349241   ⟹   NP_001336170
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,488,065 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001349242   ⟹   NP_001336171
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,586,504 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001349243   ⟹   NP_001336172
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,488,065 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001364599   ⟹   NP_001351528
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,496,286 (-)NCBI
RefSeq Acc Id: NM_001364600   ⟹   NP_001351529
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,156,720 - 60,372,663 (-)NCBI
RefSeq Acc Id: NM_001364601   ⟹   NP_001351530
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,213,183 - 59,768,848 (-)NCBI
RefSeq Acc Id: NM_001364602   ⟹   NP_001351531
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,156,720 - 59,768,848 (-)NCBI
RefSeq Acc Id: NM_001364603   ⟹   NP_001351532
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,768,848 (-)NCBI
RefSeq Acc Id: NM_001364604   ⟹   NP_001351533
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,587,625 (-)NCBI
RefSeq Acc Id: NM_006203   ⟹   NP_006194
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,586,504 (-)NCBI
GRCh37558,264,865 - 59,783,925 (-)ENTREZGENE
Build 36558,300,622 - 58,918,081 (-)NCBI Archive
HuRef555,222,770 - 56,741,723 (-)ENTREZGENE
CHM1_1558,265,111 - 58,881,982 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011543469   ⟹   XP_011541771
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,249,014 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011543470   ⟹   XP_011541772
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,188,318 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011543471   ⟹   XP_011541773
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,188,413 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011543473   ⟹   XP_011541775
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,448,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017009565   ⟹   XP_016865054
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,278,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017009566   ⟹   XP_016865055
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,488,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017009567   ⟹   XP_016865056
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 59,995,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024446110   ⟹   XP_024301878
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,524,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024446112   ⟹   XP_024301880
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,969,038 - 60,524,329 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001098101 (Get FASTA)   NCBI Sequence Viewer  
  NP_001159371 (Get FASTA)   NCBI Sequence Viewer  
  NP_001184147 (Get FASTA)   NCBI Sequence Viewer  
  NP_001184148 (Get FASTA)   NCBI Sequence Viewer  
  NP_001184149 (Get FASTA)   NCBI Sequence Viewer  
  NP_001184150 (Get FASTA)   NCBI Sequence Viewer  
  NP_001184151 (Get FASTA)   NCBI Sequence Viewer  
  NP_001184152 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336170 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336171 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336172 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351528 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351529 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351530 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351531 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351532 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351533 (Get FASTA)   NCBI Sequence Viewer  
  NP_006194 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541771 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541772 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541773 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541775 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865054 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865055 (Get FASTA)   NCBI Sequence Viewer  
  XP_016865056 (Get FASTA)   NCBI Sequence Viewer  
  XP_024301878 (Get FASTA)   NCBI Sequence Viewer  
  XP_024301880 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA03592 (Get FASTA)   NCBI Sequence Viewer  
  AAA97890 (Get FASTA)   NCBI Sequence Viewer  
  AAA97891 (Get FASTA)   NCBI Sequence Viewer  
  AAA97892 (Get FASTA)   NCBI Sequence Viewer  
  AAC00069 (Get FASTA)   NCBI Sequence Viewer  
  AAC00070 (Get FASTA)   NCBI Sequence Viewer  
  AAC13745 (Get FASTA)   NCBI Sequence Viewer  
  AAC51928 (Get FASTA)   NCBI Sequence Viewer  
  AAH08390 (Get FASTA)   NCBI Sequence Viewer  
  AAH36319 (Get FASTA)   NCBI Sequence Viewer  
  AAN10117 (Get FASTA)   NCBI Sequence Viewer  
  AAN10118 (Get FASTA)   NCBI Sequence Viewer  
  AAN10119 (Get FASTA)   NCBI Sequence Viewer  
  AAP36062 (Get FASTA)   NCBI Sequence Viewer  
  AAP75760 (Get FASTA)   NCBI Sequence Viewer  
  AAP75761 (Get FASTA)   NCBI Sequence Viewer  
  AAQ90404 (Get FASTA)   NCBI Sequence Viewer  
  AEE61047 (Get FASTA)   NCBI Sequence Viewer  
  CAC03756 (Get FASTA)   NCBI Sequence Viewer  
  CAC03757 (Get FASTA)   NCBI Sequence Viewer  
  CAC03758 (Get FASTA)   NCBI Sequence Viewer  
  EAW54982 (Get FASTA)   NCBI Sequence Viewer  
  EAW54983 (Get FASTA)   NCBI Sequence Viewer  
  EAW54984 (Get FASTA)   NCBI Sequence Viewer  
  EAW54985 (Get FASTA)   NCBI Sequence Viewer  
  EAW54986 (Get FASTA)   NCBI Sequence Viewer  
  EAW54987 (Get FASTA)   NCBI Sequence Viewer  
  EAW54988 (Get FASTA)   NCBI Sequence Viewer  
  EAW54989 (Get FASTA)   NCBI Sequence Viewer  
  EAW54990 (Get FASTA)   NCBI Sequence Viewer  
  EAW54991 (Get FASTA)   NCBI Sequence Viewer  
  EAW54992 (Get FASTA)   NCBI Sequence Viewer  
  Q08499 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001159371   ⟸   NM_001165899
- Peptide Label: isoform PDE4D7
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001098101   ⟸   NM_001104631
- Peptide Label: isoform PDE4D4
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot),   A0A140VJR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001184147   ⟸   NM_001197218
- Peptide Label: isoform PDE4D5
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_006194   ⟸   NM_006203
- Peptide Label: isoform PDE4D3
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001184148   ⟸   NM_001197219
- Peptide Label: isoform PDE4D8
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001184149   ⟸   NM_001197220
- Peptide Label: isoform PDE4D9
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001184150   ⟸   NM_001197221
- Peptide Label: isoform PDE4D2
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001184151   ⟸   NM_001197222
- Peptide Label: isoform PDE4D1
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001184152   ⟸   NM_001197223
- Peptide Label: isoform PDE4D6
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011541775   ⟸   XM_011543473
- Peptide Label: isoform X2
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011541771   ⟸   XM_011543469
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011541773   ⟸   XM_011543471
- Peptide Label: isoform X2
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011541772   ⟸   XM_011543470
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016865055   ⟸   XM_017009566
- Peptide Label: isoform X2
- UniProtKB: Q08499 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016865054   ⟸   XM_017009565
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016865056   ⟸   XM_017009567
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_024301880   ⟸   XM_024446112
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024301878   ⟸   XM_024446110
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001336172   ⟸   NM_001349243
- Peptide Label: isoform 12
- Sequence:
RefSeq Acc Id: NP_001336170   ⟸   NM_001349241
- Peptide Label: isoform 10
- Sequence:
RefSeq Acc Id: NP_001336171   ⟸   NM_001349242
- Peptide Label: isoform 11
- Sequence:
RefSeq Acc Id: NP_001351528   ⟸   NM_001364599
- Peptide Label: isoform PDE4D7
RefSeq Acc Id: NP_001351532   ⟸   NM_001364603
- Peptide Label: isoform PDE4D2
RefSeq Acc Id: NP_001351533   ⟸   NM_001364604
- Peptide Label: isoform 12
RefSeq Acc Id: NP_001351529   ⟸   NM_001364600
- Peptide Label: isoform 14
RefSeq Acc Id: NP_001351531   ⟸   NM_001364602
- Peptide Label: isoform 16
RefSeq Acc Id: NP_001351530   ⟸   NM_001364601
- Peptide Label: isoform 15
RefSeq Acc Id: ENSP00000425917   ⟸   ENST00000502575
RefSeq Acc Id: ENSP00000423094   ⟸   ENST00000502484
RefSeq Acc Id: ENSP00000425605   ⟸   ENST00000503258
RefSeq Acc Id: ENSP00000490821   ⟸   ENST00000636120
RefSeq Acc Id: ENSP00000425910   ⟸   ENST00000505507
RefSeq Acc Id: ENSP00000421013   ⟸   ENST00000505453
RefSeq Acc Id: ENSP00000308485   ⟸   ENST00000309641
RefSeq Acc Id: ENSP00000353152   ⟸   ENST00000360047
RefSeq Acc Id: ENSP00000492052   ⟸   ENST00000638939
RefSeq Acc Id: ENSP00000442734   ⟸   ENST00000546160
RefSeq Acc Id: ENSP00000424852   ⟸   ENST00000507116
RefSeq Acc Id: ENSP00000423555   ⟸   ENST00000509368
RefSeq Acc Id: ENSP00000384806   ⟸   ENST00000405755
RefSeq Acc Id: ENSP00000345502   ⟸   ENST00000340635
RefSeq Acc Id: ENSP00000321739   ⟸   ENST00000317118
RefSeq Acc Id: ENSP00000421829   ⟸   ENST00000514552
RefSeq Acc Id: ENSP00000424281   ⟸   ENST00000515835
RefSeq Acc Id: ENSP00000351800   ⟸   ENST00000358923
Protein Domains
PDE4_UCR   PDEase

Promoters
RGD ID:6803447
Promoter ID:HG_KWN:50181
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:UC003JRS.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36558,331,456 - 58,331,956 (-)MPROMDB
RGD ID:6803448
Promoter ID:HG_KWN:50183
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Lymphoblastoid,   NB4
Transcripts:UC003JRT.2,   UC003JRU.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36558,370,951 - 58,371,942 (-)MPROMDB
RGD ID:6803455
Promoter ID:HG_KWN:50184
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:UC010IWI.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36558,547,521 - 58,548,122 (-)MPROMDB
RGD ID:6803469
Promoter ID:HG_KWN:50187
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:UC003JRV.2,   UC003JSD.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36558,607,171 - 58,607,722 (-)MPROMDB
RGD ID:6803451
Promoter ID:HG_KWN:50188
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:UC003JRW.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36558,688,256 - 58,688,756 (-)MPROMDB
RGD ID:6803446
Promoter ID:HG_KWN:50189
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:NM_006203
Position:
Human AssemblyChrPosition (strand)Source
Build 36558,917,726 - 58,918,577 (-)MPROMDB
RGD ID:6869660
Promoter ID:EPDNEW_H7995
Type:initiation region
Name:PDE4D_11
Description:phosphodiesterase 4D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7996  EPDNEW_H7997  EPDNEW_H7998  EPDNEW_H7999  EPDNEW_H8000  EPDNEW_H8001  EPDNEW_H8003  EPDNEW_H8004  EPDNEW_H8005  EPDNEW_H8002  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38558,999,891 - 58,999,951EPDNEW
RGD ID:6869662
Promoter ID:EPDNEW_H7996
Type:initiation region
Name:PDE4D_5
Description:phosphodiesterase 4D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7995  EPDNEW_H7997  EPDNEW_H7998  EPDNEW_H7999  EPDNEW_H8000  EPDNEW_H8001  EPDNEW_H8003  EPDNEW_H8004  EPDNEW_H8005  EPDNEW_H8002  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,039,536 - 59,039,596EPDNEW
RGD ID:6803445
Promoter ID:HG_KWN:50191
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   Lymphoblastoid
Transcripts:ENST00000405053,   UC003JRY.2,   UC003JRZ.2,   UC003JSC.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36559,100,009 - 59,100,509 (-)MPROMDB
RGD ID:6869664
Promoter ID:EPDNEW_H7997
Type:initiation region
Name:PDE4D_8
Description:phosphodiesterase 4D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7995  EPDNEW_H7996  EPDNEW_H7998  EPDNEW_H7999  EPDNEW_H8000  EPDNEW_H8001  EPDNEW_H8003  EPDNEW_H8004  EPDNEW_H8005  EPDNEW_H8002  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,276,081 - 59,276,141EPDNEW
RGD ID:6869666
Promoter ID:EPDNEW_H7998
Type:initiation region
Name:PDE4D_7
Description:phosphodiesterase 4D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7995  EPDNEW_H7996  EPDNEW_H7997  EPDNEW_H7999  EPDNEW_H8000  EPDNEW_H8001  EPDNEW_H8003  EPDNEW_H8004  EPDNEW_H8005  EPDNEW_H8002  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,356,970 - 59,357,030EPDNEW
RGD ID:6869668
Promoter ID:EPDNEW_H7999
Type:multiple initiation site
Name:PDE4D_3
Description:phosphodiesterase 4D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7995  EPDNEW_H7996  EPDNEW_H7997  EPDNEW_H7998  EPDNEW_H8000  EPDNEW_H8001  EPDNEW_H8003  EPDNEW_H8004  EPDNEW_H8005  EPDNEW_H8002  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,586,504 - 59,586,564EPDNEW
RGD ID:6869670
Promoter ID:EPDNEW_H8000
Type:initiation region
Name:PDE4D_4
Description:phosphodiesterase 4D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7995  EPDNEW_H7996  EPDNEW_H7997  EPDNEW_H7998  EPDNEW_H7999  EPDNEW_H8001  EPDNEW_H8003  EPDNEW_H8004  EPDNEW_H8005  EPDNEW_H8002  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,768,536 - 59,768,596EPDNEW
RGD ID:6869672
Promoter ID:EPDNEW_H8001
Type:initiation region
Name:PDE4D_1
Description:phosphodiesterase 4D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7995  EPDNEW_H7996  EPDNEW_H7997  EPDNEW_H7998  EPDNEW_H7999  EPDNEW_H8000  EPDNEW_H8003  EPDNEW_H8004  EPDNEW_H8005  EPDNEW_H8002  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38559,768,645 - 59,768,705EPDNEW