Cyth1 (cytohesin 1) - Rat Genome Database

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Gene: Cyth1 (cytohesin 1) Mus musculus
Analyze
Symbol: Cyth1
Name: cytohesin 1
RGD ID: 736055
MGI Page MGI
Description: Enables guanyl-nucleotide exchange factor activity. Acts upstream of or within establishment of epithelial cell polarity. Located in bicellular tight junction; cytoplasmic side of plasma membrane; and cytosol. Is expressed in brain; sciatic nerve; and spinal cord. Orthologous to human CYTH1 (cytohesin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CLM; CLM1; CTH-1; CYTIP; cytohesin-1; KIAA4240; mKIAA4240; mSec7-1; PH, SEC7 and coiled-coil domain-containing protein 1; pleckstrin homology, Sec7 and coiled-coil domains 1; Psc; Pscd1; SEC7 homolog A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911118,054,996 - 118,139,452 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11118,022,845 - 118,139,386 (-)EnsemblGRCm39 Ensembl
GRCm3811118,164,170 - 118,248,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11118,132,019 - 118,248,592 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711118,025,480 - 118,109,906 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,980,265 - 118,064,650 (-)NCBIMGSCv36mm8
Celera11129,909,098 - 129,993,513 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9744817   PMID:9745014   PMID:9825957   PMID:10349636   PMID:10978522   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12606567   PMID:14610273   PMID:15102471  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:17244351   PMID:18042453   PMID:18799693   PMID:19346499   PMID:20080746   PMID:21267068   PMID:21677750   PMID:22815959   PMID:23012656  
PMID:23517829   PMID:28378742   PMID:28671696   PMID:29420262   PMID:30674481   PMID:32325033   PMID:32554809   PMID:32873638   PMID:34474245  


Genomics

Comparative Map Data
Cyth1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911118,054,996 - 118,139,452 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11118,022,845 - 118,139,386 (-)EnsemblGRCm39 Ensembl
GRCm3811118,164,170 - 118,248,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11118,132,019 - 118,248,592 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711118,025,480 - 118,109,906 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611117,980,265 - 118,064,650 (-)NCBIMGSCv36mm8
Celera11129,909,098 - 129,993,513 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.96NCBI
CYTH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,674,048 - 78,782,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,674,048 - 78,782,297 (-)EnsemblGRCh38hg38GRCh38
GRCh371776,670,130 - 76,778,355 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361774,181,725 - 74,289,971 (-)NCBINCBI36Build 36hg18NCBI36
Build 341774,181,726 - 74,289,971NCBI
Celera1773,266,644 - 73,376,096 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1772,092,940 - 72,200,967 (-)NCBIHuRef
CHM1_11776,733,895 - 76,842,282 (-)NCBICHM1_1
T2T-CHM13v2.01779,568,970 - 79,677,073 (-)NCBIT2T-CHM13v2.0
Cyth1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810103,901,376 - 103,984,496 (-)NCBIGRCr8
mRatBN7.210103,402,727 - 103,485,826 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10103,366,145 - 103,485,760 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10108,504,648 - 108,586,066 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010107,967,775 - 108,049,197 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010103,325,189 - 103,406,482 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010107,197,983 - 107,281,285 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10107,197,989 - 107,281,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,832,873 - 106,916,383 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,189,311 - 108,253,419 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110108,203,814 - 108,267,923 (-)NCBI
Celera10101,964,776 - 102,046,060 (-)NCBICelera
Cytogenetic Map10q32.2-q32.3NCBI
Cyth1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555063,920,807 - 3,984,146 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555063,920,803 - 3,997,012 (+)NCBIChiLan1.0ChiLan1.0
CYTH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21994,722,058 - 94,830,553 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11799,551,796 - 99,660,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01772,749,310 - 72,857,992 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11778,295,437 - 78,358,662 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1778,295,437 - 78,358,735 (-)Ensemblpanpan1.1panPan2
CYTH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.192,636,553 - 2,677,356 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl92,605,084 - 2,675,661 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,256,600 - 3,334,363 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.093,250,463 - 3,328,274 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl93,250,242 - 3,326,578 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.193,273,781 - 3,351,532 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.093,398,418 - 3,476,204 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.093,479,378 - 3,557,189 (+)NCBIUU_Cfam_GSD_1.0
Cyth1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,259,592 - 3,295,412 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365943,116,541 - 3,152,361 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365943,116,547 - 3,147,992 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYTH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,356,245 - 3,432,641 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,356,265 - 3,432,644 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2123,396,111 - 3,464,765 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYTH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,652,979 - 70,755,697 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1670,652,860 - 70,713,199 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607741,782,888 - 41,885,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cyth1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248018,064,012 - 8,165,701 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248018,064,205 - 8,165,672 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cyth1
2727 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3768
Count of miRNA genes:690
Interacting mature miRNAs:911
Transcripts:ENSMUST00000017276, ENSMUST00000100181, ENSMUST00000106302, ENSMUST00000106305, ENSMUST00000131115, ENSMUST00000141243, ENSMUST00000151165
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001112699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001112700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA268675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB013464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB013465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB035537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB035538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF051337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY126516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY204859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ131185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000017276   ⟹   ENSMUSP00000017276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,055,001 - 118,139,386 (-)Ensembl
GRCm38.p6 Ensembl11118,164,175 - 118,248,560 (-)Ensembl
RefSeq Acc Id: ENSMUST00000100181   ⟹   ENSMUSP00000097756
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,022,845 - 118,139,328 (-)Ensembl
GRCm38.p6 Ensembl11118,132,019 - 118,248,502 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106302   ⟹   ENSMUSP00000101909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,054,992 - 118,103,568 (-)Ensembl
GRCm38.p6 Ensembl11118,164,166 - 118,212,742 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106305   ⟹   ENSMUSP00000101912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,054,992 - 118,139,418 (-)Ensembl
GRCm38.p6 Ensembl11118,164,166 - 118,248,592 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,076,253 - 118,109,851 (-)Ensembl
GRCm38.p6 Ensembl11118,185,427 - 118,219,025 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,075,798 - 118,117,805 (-)Ensembl
GRCm38.p6 Ensembl11118,184,972 - 118,226,979 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151165   ⟹   ENSMUSP00000114792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,054,992 - 118,103,568 (-)Ensembl
GRCm38.p6 Ensembl11118,185,446 - 118,212,742 (-)Ensembl
RefSeq Acc Id: NM_001112699   ⟹   NP_001106169
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,139,384 (-)NCBI
GRCm3811118,164,170 - 118,248,558 (-)NCBI
MGSCv3711118,025,480 - 118,109,906 (-)RGD
Celera11129,909,098 - 129,993,513 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001112700   ⟹   NP_001106170
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,103,557 (-)NCBI
GRCm3811118,164,170 - 118,212,731 (-)NCBI
MGSCv3711118,025,480 - 118,109,906 (-)RGD
Celera11129,909,098 - 129,993,513 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001378885   ⟹   NP_001365814
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,103,557 (-)NCBI
GRCm3811118,164,170 - 118,212,731 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378886   ⟹   NP_001365815
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,093,556 (-)NCBI
GRCm3811118,164,170 - 118,202,730 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378887   ⟹   NP_001365816
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,071,925 - 118,139,384 (-)NCBI
GRCm3811118,181,099 - 118,248,558 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378888   ⟹   NP_001365817
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,071,925 - 118,093,556 (-)NCBI
GRCm3811118,181,099 - 118,202,730 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011180   ⟹   NP_035310
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,139,384 (-)NCBI
GRCm3811118,164,170 - 118,248,558 (-)NCBI
MGSCv3711118,025,480 - 118,109,906 (-)RGD
Celera11129,909,098 - 129,993,513 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166155
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,093,556 (-)NCBI
GRCm3811118,164,170 - 118,202,730 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532519   ⟹   XP_006532582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,117,822 (-)NCBI
GRCm3811118,164,170 - 118,227,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248805   ⟹   XP_011247107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,072,474 - 118,103,614 (-)NCBI
GRCm3811118,181,648 - 118,212,787 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779921
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,103,610 (-)NCBI
GRCm3811118,164,170 - 118,212,782 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949350
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,054,996 - 118,139,452 (-)NCBI
GRCm3811118,164,170 - 118,248,616 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035310   ⟸   NM_011180
- Peptide Label: isoform 1
- UniProtKB: O88817 (UniProtKB/Swiss-Prot),   Q76MU4 (UniProtKB/Swiss-Prot),   Q9QX11 (UniProtKB/Swiss-Prot),   Q3T9T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106169   ⟸   NM_001112699
- Peptide Label: isoform 2
- UniProtKB: Q8K3E8 (UniProtKB/TrEMBL),   Q3T9T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106170   ⟸   NM_001112700
- Peptide Label: isoform 3
- UniProtKB: Q3TZ02 (UniProtKB/TrEMBL),   Q3T9T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532582   ⟸   XM_006532519
- Peptide Label: isoform X1
- UniProtKB: Q3T9T9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247107   ⟸   XM_011248805
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001365814   ⟸   NM_001378885
- Peptide Label: isoform 4
- UniProtKB: Q3T9T9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365815   ⟸   NM_001378886
- Peptide Label: isoform 5
- UniProtKB: Q3T9T9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365816   ⟸   NM_001378887
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001365817   ⟸   NM_001378888
- Peptide Label: isoform 7
RefSeq Acc Id: ENSMUSP00000101909   ⟸   ENSMUST00000106302
RefSeq Acc Id: ENSMUSP00000101912   ⟸   ENSMUST00000106305
RefSeq Acc Id: ENSMUSP00000114792   ⟸   ENSMUST00000151165
RefSeq Acc Id: ENSMUSP00000017276   ⟸   ENSMUST00000017276
RefSeq Acc Id: ENSMUSP00000097756   ⟸   ENSMUST00000100181
Protein Domains
PH   SEC7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QX11-F1-model_v2 AlphaFold Q9QX11 1-398 view protein structure

Promoters
RGD ID:6821619
Promoter ID:MM_KWN:10772
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000106302,   NM_001112700,   OTTMUST00000008556,   UC007MOR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611118,073,816 - 118,074,327 (-)MPROMDB
RGD ID:6820688
Promoter ID:MM_KWN:10774
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000008558
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611118,088,166 - 118,088,666 (-)MPROMDB
RGD ID:6821620
Promoter ID:MM_KWN:10775
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106304,   ENSMUST00000106305,   NM_001112699,   NM_011180,   OTTMUST00000008555,   UC007MOQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611118,109,761 - 118,110,307 (-)MPROMDB
RGD ID:8677552
Promoter ID:EPDNEW_M16807
Type:initiation region
Name:Cyth1_3
Description:Mus musculus cytohesin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16808  EPDNEW_M16809  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811118,202,537 - 118,202,597EPDNEW
RGD ID:8677554
Promoter ID:EPDNEW_M16808
Type:multiple initiation site
Name:Cyth1_1
Description:Mus musculus cytohesin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16807  EPDNEW_M16809  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811118,212,731 - 118,212,791EPDNEW
RGD ID:8677556
Promoter ID:EPDNEW_M16809
Type:initiation region
Name:Cyth1_2
Description:Mus musculus cytohesin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16807  EPDNEW_M16808  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811118,248,556 - 118,248,616EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1334257 AgrOrtholog
Ensembl Genes ENSMUSG00000017132 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000017276 ENTREZGENE
  ENSMUST00000017276.14 UniProtKB/Swiss-Prot
  ENSMUST00000100181.11 UniProtKB/TrEMBL
  ENSMUST00000106302.9 UniProtKB/TrEMBL
  ENSMUST00000106305.9 UniProtKB/Swiss-Prot
  ENSMUST00000151165 ENTREZGENE
  ENSMUST00000151165.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1000.11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.220.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec7_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec7_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec7_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19157 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1334257 ENTREZGENE
NCBI Gene 19157 ENTREZGENE
PANTHER CYTOHESIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GUANYL-NUCLEOTIDE EXCHANGE FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cyth1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEC7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Sec7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48425 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A517_MOUSE UniProtKB/TrEMBL
  B1AQE4_MOUSE UniProtKB/TrEMBL
  CYH1_MOUSE UniProtKB/Swiss-Prot
  O88817 ENTREZGENE
  Q3T9T9 ENTREZGENE, UniProtKB/TrEMBL
  Q3TZ02 ENTREZGENE, UniProtKB/TrEMBL
  Q570Y7_MOUSE UniProtKB/TrEMBL
  Q76MU4 ENTREZGENE
  Q8K3E8 ENTREZGENE, UniProtKB/TrEMBL
  Q9QX11 ENTREZGENE
UniProt Secondary O88817 UniProtKB/Swiss-Prot
  Q76MU4 UniProtKB/Swiss-Prot