Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | atrial fibrillation | | ISO | CYTH1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29892015 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | atrial fibrillation | | ISO | CYTH1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29892015 | |
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# | Reference Title | Reference Citation |
1. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | PID Annotation Import Pipeline | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:9744817 | PMID:9745014 | PMID:9825957 | PMID:10349636 | PMID:10978522 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12477932 | PMID:12606567 | PMID:14610273 | PMID:15102471 |
PMID:15782199 | PMID:16141072 | PMID:16141073 | PMID:17244351 | PMID:18042453 | PMID:18799693 | PMID:19346499 | PMID:20080746 | PMID:21267068 | PMID:21677750 | PMID:22815959 | PMID:23012656 |
PMID:23517829 | PMID:28378742 | PMID:28671696 | PMID:29420262 | PMID:30674481 | PMID:32325033 | PMID:32554809 | PMID:32873638 | PMID:34474245 |
Cyth1 (Mus musculus - house mouse) |
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CYTH1 (Homo sapiens - human) |
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Cyth1 (Rattus norvegicus - Norway rat) |
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Cyth1 (Chinchilla lanigera - long-tailed chinchilla) |
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CYTH1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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CYTH1 (Canis lupus familiaris - dog) |
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Cyth1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CYTH1 (Sus scrofa - pig) |
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CYTH1 (Chlorocebus sabaeus - green monkey) |
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Cyth1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Cyth1
2727 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RefSeq Transcripts | NM_001112699 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001112700 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001378885 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001378886 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001378887 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001378888 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_011180 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_166155 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006532519 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011248805 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_001779921 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_003949350 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AA268675 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AB013464 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AB013465 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AB035537 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AB035538 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF051337 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK078502 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK135303 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK158216 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK172296 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK210975 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK219437 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK220302 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL591109 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL591204 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL591404 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY126516 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC006658 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC057974 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY204859 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466558 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CJ131185 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000017276 ⟹ ENSMUSP00000017276 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000100181 ⟹ ENSMUSP00000097756 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000106302 ⟹ ENSMUSP00000101909 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000106305 ⟹ ENSMUSP00000101912 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000131115 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000141243 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000151165 ⟹ ENSMUSP00000114792 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001112699 ⟹ NP_001106169 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001112700 ⟹ NP_001106170 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001378885 ⟹ NP_001365814 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001378886 ⟹ NP_001365815 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001378887 ⟹ NP_001365816 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001378888 ⟹ NP_001365817 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_011180 ⟹ NP_035310 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_166155 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006532519 ⟹ XP_006532582 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011248805 ⟹ XP_011247107 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XR_001779921 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XR_003949350 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001106169 | (Get FASTA) | NCBI Sequence Viewer |
NP_001106170 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001365814 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001365815 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001365816 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001365817 | (Get FASTA) | NCBI Sequence Viewer | |
NP_035310 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006532582 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011247107 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAC71694 | (Get FASTA) | NCBI Sequence Viewer |
AAH57974 | (Get FASTA) | NCBI Sequence Viewer | |
AAM95454 | (Get FASTA) | NCBI Sequence Viewer | |
BAA33428 | (Get FASTA) | NCBI Sequence Viewer | |
BAB13509 | (Get FASTA) | NCBI Sequence Viewer | |
BAB13511 | (Get FASTA) | NCBI Sequence Viewer | |
BAD90227 | (Get FASTA) | NCBI Sequence Viewer | |
BAE34408 | (Get FASTA) | NCBI Sequence Viewer | |
BAE42931 | (Get FASTA) | NCBI Sequence Viewer | |
EDL34651 | (Get FASTA) | NCBI Sequence Viewer | |
EDL34652 | (Get FASTA) | NCBI Sequence Viewer | |
EDL34653 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000017276 | ||
ENSMUSP00000017276.8 | |||
ENSMUSP00000097756.5 | |||
ENSMUSP00000101909.3 | |||
ENSMUSP00000101912.3 | |||
ENSMUSP00000114792 | |||
ENSMUSP00000114792.2 | |||
GenBank Protein | Q9QX11 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_035310 ⟸ NM_011180 |
- Peptide Label: | isoform 1 |
- UniProtKB: | O88817 (UniProtKB/Swiss-Prot), Q76MU4 (UniProtKB/Swiss-Prot), Q9QX11 (UniProtKB/Swiss-Prot), Q3T9T9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001106169 ⟸ NM_001112699 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q8K3E8 (UniProtKB/TrEMBL), Q3T9T9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001106170 ⟸ NM_001112700 |
- Peptide Label: | isoform 3 |
- UniProtKB: | Q3TZ02 (UniProtKB/TrEMBL), Q3T9T9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006532582 ⟸ XM_006532519 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3T9T9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_011247107 ⟸ XM_011248805 |
- Peptide Label: | isoform X2 |
- Sequence: |
RefSeq Acc Id: | NP_001365814 ⟸ NM_001378885 |
- Peptide Label: | isoform 4 |
- UniProtKB: | Q3T9T9 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001365815 ⟸ NM_001378886 |
- Peptide Label: | isoform 5 |
- UniProtKB: | Q3T9T9 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001365816 ⟸ NM_001378887 |
- Peptide Label: | isoform 6 |
RefSeq Acc Id: | NP_001365817 ⟸ NM_001378888 |
- Peptide Label: | isoform 7 |
RefSeq Acc Id: | ENSMUSP00000101909 ⟸ ENSMUST00000106302 |
RefSeq Acc Id: | ENSMUSP00000101912 ⟸ ENSMUST00000106305 |
RefSeq Acc Id: | ENSMUSP00000114792 ⟸ ENSMUST00000151165 |
RefSeq Acc Id: | ENSMUSP00000017276 ⟸ ENSMUST00000017276 |
RefSeq Acc Id: | ENSMUSP00000097756 ⟸ ENSMUST00000100181 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9QX11-F1-model_v2 | AlphaFold | Q9QX11 | 1-398 | view protein structure |
RGD ID: | 6821619 | ||||||||
Promoter ID: | MM_KWN:10772 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_4Hour, Liver, Lung, Spleen | ||||||||
Transcripts: | ENSMUST00000106302, NM_001112700, OTTMUST00000008556, UC007MOR.1 | ||||||||
Position: |
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RGD ID: | 6820688 | ||||||||
Promoter ID: | MM_KWN:10774 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Spleen | ||||||||
Transcripts: | OTTMUST00000008558 | ||||||||
Position: |
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RGD ID: | 6821620 | ||||||||
Promoter ID: | MM_KWN:10775 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000106304, ENSMUST00000106305, NM_001112699, NM_011180, OTTMUST00000008555, UC007MOQ.1 | ||||||||
Position: |
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RGD ID: | 8677552 | ||||||||
Promoter ID: | EPDNEW_M16807 | ||||||||
Type: | initiation region | ||||||||
Name: | Cyth1_3 | ||||||||
Description: | Mus musculus cytohesin 1 , transcript variant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M16808 EPDNEW_M16809 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8677554 | ||||||||
Promoter ID: | EPDNEW_M16808 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Cyth1_1 | ||||||||
Description: | Mus musculus cytohesin 1 , transcript variant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M16807 EPDNEW_M16809 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8677556 | ||||||||
Promoter ID: | EPDNEW_M16809 | ||||||||
Type: | initiation region | ||||||||
Name: | Cyth1_2 | ||||||||
Description: | Mus musculus cytohesin 1 , transcript variant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M16807 EPDNEW_M16808 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1334257 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000017132 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000017276 | ENTREZGENE |
ENSMUST00000017276.14 | UniProtKB/Swiss-Prot | |
ENSMUST00000100181.11 | UniProtKB/TrEMBL | |
ENSMUST00000106302.9 | UniProtKB/TrEMBL | |
ENSMUST00000106305.9 | UniProtKB/Swiss-Prot | |
ENSMUST00000151165 | ENTREZGENE | |
ENSMUST00000151165.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.1000.11 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
1.10.220.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
2.30.29.30 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | PH-like_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PH_domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Sec7_C_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Sec7_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Sec7_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:19157 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGD | MGI:1334257 | ENTREZGENE |
NCBI Gene | 19157 | ENTREZGENE |
PANTHER | CYTOHESIN-1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GUANYL-NUCLEOTIDE EXCHANGE FACTOR | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | PF00169 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Sec7 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Cyth1 | PhenoGen |
PROSITE | PH_DOMAIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SEC7 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | Sec7 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SM00233 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | PH domain-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF48425 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | A2A517_MOUSE | UniProtKB/TrEMBL |
B1AQE4_MOUSE | UniProtKB/TrEMBL | |
CYH1_MOUSE | UniProtKB/Swiss-Prot | |
O88817 | ENTREZGENE | |
Q3T9T9 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3TZ02 | ENTREZGENE, UniProtKB/TrEMBL | |
Q570Y7_MOUSE | UniProtKB/TrEMBL | |
Q76MU4 | ENTREZGENE | |
Q8K3E8 | ENTREZGENE, UniProtKB/TrEMBL | |
Q9QX11 | ENTREZGENE | |
UniProt Secondary | O88817 | UniProtKB/Swiss-Prot |
Q76MU4 | UniProtKB/Swiss-Prot |