Mitf (melanogenesis associated transcription factor) - Rat Genome Database
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Gene: Mitf (melanogenesis associated transcription factor) Mus musculus
Analyze
Symbol: Mitf
Name: melanogenesis associated transcription factor
RGD ID: 735983
MGI Page MGI
Description: Exhibits several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; E-box binding activity; and protein dimerization activity. Involved in several processes, including canonical Wnt signaling pathway involved in negative regulation of apoptotic process; osteoclast differentiation; and regulation of osteoclast differentiation. Localizes to nucleus. Is expressed in several structures, including alimentary system; central nervous system; integumental system; mesenchyme derived from neural crest; and sensory organ. Used to study Tietz syndrome; Waardenburg's syndrome (multiple); ocular albinism with sensorineural deafness; and osteosclerosis (multiple). Human ortholog(s) of this gene implicated in Tietz syndrome; Tietze's syndrome; Waardenburg syndrome type 2A; Waardenburg's syndrome; and familial melanoma. Orthologous to human MITF (melanocyte inducing transcription factor).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BCC2; bHLHe3; bHLHe32; black eyed white; bw; Gsfbcc; Gsfbcc2; m; MGC124309; MGC124310; mi; microphtalmia-associated transcription factor; microphthalmia-associated transcription factor; vit; Vitiligo; Wh
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,783,966 - 97,998,321 (+)NCBIGRCm39mm39
GRCm38697,807,002 - 98,021,360 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,807,052 - 98,021,349 (+)EnsemblGRCm38mm10GRCm38
MGSCv37697,757,052 - 97,971,352 (+)NCBIGRCm37mm9NCBIm37
MGSCv36697,957,255 - 97,984,170 (+)NCBImm8
Celera699,672,554 - 99,880,690 (+)NCBICelera
Cytogenetic Map6D3NCBI
cM Map645.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinic acid  (ISO)
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinal  (ISO)
9-cis-retinoic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
afzelin  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbaryl  (ISO)
carbon nanotube  (EXP)
chaetocin  (EXP)
chlorpromazine  (ISO)
ciguatoxin CTX1B  (EXP)
ciprofloxacin  (ISO)
cisplatin  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyanamide  (ISO)
cycloheximide  (EXP,ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
DDT  (ISO)
disodium selenite  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
emodin  (ISO)
entinostat  (ISO)
fenofibrate  (EXP)
formaldehyde  (ISO)
lawsone  (EXP)
lead diacetate  (EXP)
lithium chloride  (ISO)
LY294002  (EXP)
melphalan  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methylseleninic acid  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP)
N-acetyl-L-cysteine  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-phenylthiourea  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nonanedioic acid  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
phytol  (EXP)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
progesterone  (ISO)
Ptaquiloside  (EXP)
quercetin  (EXP,ISO)
resorcinol  (EXP)
resveratrol  (EXP,ISO)
SB 203580  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
stilbenoid  (EXP)
Sweroside  (EXP)
tamoxifen  (EXP)
taurine  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
theophylline  (EXP)
thymol  (EXP)
thymol sulfate(1-)  (EXP)
torcetrapib  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vemurafenib  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (IBA,IC,IDA,ISO)
protein-containing complex  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal choroid pigmentation  (IAGP)
abnormal ciliary body morphology  (IAGP)
abnormal ciliary process morphology  (IAGP)
abnormal coat/hair pigmentation  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cochlear hair cell morphology  (IAGP)
abnormal epiphyseal plate morphology  (IAGP)
abnormal estrous cycle  (IAGP)
abnormal eye development  (IAGP)
abnormal eye morphology  (IAGP)
abnormal eye physiology  (IAGP)
abnormal eye pigmentation  (IAGP)
abnormal eye size  (IAGP)
abnormal eyelid morphology  (IEA)
abnormal fertility/fecundity  (IAGP)
abnormal foot pigmentation  (IAGP)
abnormal hair follicle melanocyte morphology  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair shaft melanin granule morphology  (IEA)
abnormal Harderian gland pigmentation  (IAGP)
abnormal hearing physiology  (IAGP)
abnormal incisor morphology  (IEA)
abnormal inner ear morphology  (IAGP)
abnormal iris morphology  (IAGP)
abnormal iris pigmentation  (IAGP)
abnormal iris stromal pigmentation  (IEA)
abnormal kidney pelvis morphology  (IAGP)
abnormal Langerhans cell physiology  (IAGP)
abnormal lens morphology  (IAGP)
abnormal long bone epiphyseal plate morphology  (IAGP)
abnormal long bone metaphysis morphology  (IAGP)
abnormal loop of Henle morphology  (IAGP)
abnormal mast cell physiology  (IAGP)
abnormal melanoblast migration  (IAGP)
abnormal melanoblast morphology  (IAGP)
abnormal melanocyte morphology  (IAGP)
abnormal nursing  (IAGP)
abnormal ocular fundus morphology  (IAGP)
abnormal optic choroid morphology  (IAGP)
abnormal optic cup morphology  (IAGP)
abnormal optic fissure closure  (IAGP)
abnormal optic stalk morphology  (IAGP)
abnormal osteoclast morphology  (IAGP)
abnormal osteoclast physiology  (IAGP)
abnormal photoreceptor inner segment morphology  (IAGP)
abnormal pinna reflex  (IAGP)
abnormal posterior eye segment morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retinal development  (IAGP)
abnormal retinal neuronal layer morphology  (IAGP)
abnormal retinal photoreceptor morphology  (IAGP)
abnormal retinal pigment epithelium morphology  (IAGP)
abnormal retinal pigmentation  (IAGP)
abnormal rod electrophysiology  (IAGP)
abnormal scala media morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skin pigmentation  (IAGP)
abnormal spleen germinal center morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen red pulp morphology  (IAGP)
abnormal spleen white pulp morphology  (IAGP)
abnormal stria vascularis morphology  (IAGP)
abnormal vestibular saccule morphology  (IAGP)
abnormal vitreous body morphology  (IAGP)
absent coat pigmentation  (IAGP)
absent eye pigmentation  (IAGP)
absent hair follicle melanin granules  (IAGP)
absent optic nerve  (IAGP)
absent photoreceptor outer segment  (IAGP)
absent pinna reflex  (IAGP)
absent retinal cone cells  (IAGP)
absent retinal rod cells  (IAGP)
absent skin pigmentation  (IEA)
absent strial intermediate cells  (IAGP)
anophthalmia  (IAGP)
belly spot  (IAGP)
cataract  (IAGP)
ciliary body hypoplasia  (IAGP)
coloboma  (IAGP)
darkened coat color  (IAGP)
decreased bleeding time  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased ear pigmentation  (IAGP)
decreased eye pigmentation  (IAGP)
decreased length of long bones  (IAGP)
decreased litter size  (IAGP)
decreased mast cell number  (IAGP)
decreased melanocyte number  (IAGP)
decreased osteoclast cell number  (IAGP)
decreased serotonin level  (IAGP)
decreased survivor rate  (IAGP)
decreased tail pigmentation  (IAGP)
delayed tooth eruption  (IAGP)
dilated renal tubules  (IAGP)
diluted coat color  (IAGP)
exostosis  (IAGP)
eyelids fail to open  (IAGP)
failure of tooth eruption  (IAGP)
female infertility  (IAGP)
fetal growth retardation  (IAGP)
head spot  (IAGP)
hypopigmentation  (IEA)
impaired pupillary reflex  (IEA)
increased circulating creatinine level  (IAGP)
increased glomerular capsule space  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased osteoclast cell number  (IAGP)
increased trabecular bone connectivity density  (IAGP)
increased width of hypertrophic chondrocyte zone  (IAGP)
iris hypoplasia  (IAGP)
irregular coat pigmentation  (IAGP)
kidney inflammation  (IAGP)
liver cysts  (IAGP)
male infertility  (IAGP)
microphthalmia  (IAGP)
mydriasis  (IAGP)
no abnormal phenotype detected  (IAGP)
non-pigmented tail tip  (IEA)
ocular albinism  (IAGP)
osteopetrosis  (IAGP)
osteosclerosis  (IAGP)
pancreas cysts  (IAGP)
phenotypic reversion  (IAGP)
polycystic kidney  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IEA)
reduced fertility  (IAGP)
renal interstitial fibrosis  (IAGP)
renal tubule atrophy  (IAGP)
retinal degeneration  (IAGP)
retinal detachment  (IAGP)
retinal photoreceptor degeneration  (IAGP)
thin stria vascularis  (IAGP)
vacuolated lens  (IEA)
variable body spotting  (IEA)
variable depigmentation  (IAGP)
variegated coat color  (IAGP)
white spotting  (IAGP)
yellow coat color  (IEA)
References

Additional References at PubMed
PMID:870607   PMID:879046   PMID:1184950   PMID:1198094   PMID:1270792   PMID:1280821   PMID:1381628   PMID:1382713   PMID:1460250   PMID:1486944   PMID:1559545   PMID:1689261  
PMID:1764248   PMID:2040452   PMID:2246770   PMID:2310824   PMID:2379821   PMID:2494194   PMID:3443296   PMID:3525691   PMID:3578491   PMID:3665767   PMID:3994857   PMID:4015615  
PMID:4092923   PMID:4392283   PMID:4761674   PMID:4963367   PMID:5021438   PMID:5088022   PMID:5424503   PMID:6049665   PMID:6127714   PMID:6264778   PMID:6403657   PMID:6696991  
PMID:7042901   PMID:7152259   PMID:7495310   PMID:7517699   PMID:7522503   PMID:7524330   PMID:7524763   PMID:7556499   PMID:7558712   PMID:7588749   PMID:7629107   PMID:7720808  
PMID:7760812   PMID:7789413   PMID:7802662   PMID:7828669   PMID:7852195   PMID:7874167   PMID:7874168   PMID:7896277   PMID:7920028   PMID:7958932   PMID:7983371   PMID:8069297  
PMID:8082834   PMID:8088952   PMID:8206731   PMID:8238251   PMID:8318738   PMID:8343963   PMID:8402531   PMID:8407885   PMID:8446583   PMID:8479820   PMID:8513335   PMID:8530057  
PMID:8578601   PMID:8603923   PMID:8622664   PMID:8630510   PMID:8631154   PMID:8631625   PMID:8631626   PMID:8695840   PMID:8749302   PMID:8776879   PMID:8789737   PMID:8792932  
PMID:8812432   PMID:8837770   PMID:8839840   PMID:8947051   PMID:8983972   PMID:8987786   PMID:9108421   PMID:9119213   PMID:9199364   PMID:9207863   PMID:9223672   PMID:9227283  
PMID:9268589   PMID:9326226   PMID:9327738   PMID:9352446   PMID:9376586   PMID:9383334   PMID:9408245   PMID:9412510   PMID:9440696   PMID:9501313   PMID:9510032   PMID:9546825  
PMID:9558376   PMID:9593634   PMID:9630426   PMID:9647758   PMID:9677380   PMID:9680380   PMID:9731055   PMID:9806836   PMID:9819381   PMID:9825864   PMID:9870544   PMID:9918847  
PMID:9931354   PMID:9949161   PMID:10036191   PMID:10320095   PMID:10349636   PMID:10350149   PMID:10361115   PMID:10381505   PMID:10385706   PMID:10400990   PMID:10567402   PMID:10586063  
PMID:10623832   PMID:10711712   PMID:10760605   PMID:10790403   PMID:10828017   PMID:10886015   PMID:10898786   PMID:10903182   PMID:10982026   PMID:11042159   PMID:11076759   PMID:11076861  
PMID:11113541   PMID:11124539   PMID:11156606   PMID:11157480   PMID:11217851   PMID:11231058   PMID:11264169   PMID:11264174   PMID:11350962   PMID:11456441   PMID:11481336   PMID:11493524  
PMID:11520113   PMID:11543611   PMID:11543618   PMID:11588059   PMID:11684011   PMID:11709556   PMID:11748141   PMID:11751862   PMID:11764295   PMID:11792706   PMID:11853768   PMID:11929848  
PMID:11930005   PMID:11955610   PMID:12028584   PMID:12039954   PMID:12086670   PMID:12093801   PMID:12128226   PMID:12217379   PMID:12220516   PMID:12235125   PMID:12393515   PMID:12456501  
PMID:12466851   PMID:12477932   PMID:12586714   PMID:12652657   PMID:12695521   PMID:12753399   PMID:12756174   PMID:12756179   PMID:12771178   PMID:13162938   PMID:14421250   PMID:14527958  
PMID:14575270   PMID:14575687   PMID:14632202   PMID:14643677   PMID:14645519   PMID:14706856   PMID:14716319   PMID:14737107   PMID:14744763   PMID:14962802   PMID:15037118   PMID:15050900  
PMID:15081122   PMID:15147727   PMID:15158462   PMID:15172970   PMID:15226356   PMID:15254223   PMID:15277223   PMID:15277526   PMID:15304486   PMID:15305064   PMID:15375155   PMID:15459106  
PMID:15466381   PMID:15492754   PMID:15572665   PMID:15576400   PMID:15618488   PMID:15618518   PMID:15619674   PMID:15715979   PMID:15716956   PMID:15729346   PMID:15782199   PMID:15937937  
PMID:15983061   PMID:16029420   PMID:16034081   PMID:16038893   PMID:16076961   PMID:16117796   PMID:16129781   PMID:16140982   PMID:16141072   PMID:16141073   PMID:16185282   PMID:16186160  
PMID:16203745   PMID:16322470   PMID:16337607   PMID:16368885   PMID:16386209   PMID:16412618   PMID:16420417   PMID:16539717   PMID:16605125   PMID:16757562   PMID:16765103   PMID:16790476  
PMID:16822840   PMID:16854970   PMID:16919269   PMID:16959241   PMID:16998588   PMID:17000761   PMID:17011173   PMID:17083486   PMID:17085443   PMID:17105730   PMID:17182576   PMID:17202193  
PMID:17247639   PMID:17403683   PMID:17403896   PMID:17438132   PMID:17442941   PMID:17478475   PMID:17516925   PMID:17516926   PMID:18089649   PMID:18191835   PMID:18202372   PMID:18272592  
PMID:18281284   PMID:18287559   PMID:18313864   PMID:18353144   PMID:18397875   PMID:18424556   PMID:18454205   PMID:18557763   PMID:18582859   PMID:18627530   PMID:18703590   PMID:18715234  
PMID:18759249   PMID:18778700   PMID:18799693   PMID:18873488   PMID:18902556   PMID:18983533   PMID:18985738   PMID:19192212   PMID:19207217   PMID:19220779   PMID:19288495   PMID:19321441  
PMID:19346468   PMID:19416500   PMID:19435791   PMID:19436707   PMID:19469902   PMID:19493314   PMID:19515996   PMID:19553286   PMID:19587010   PMID:19596317   PMID:19635938   PMID:19659570  
PMID:19666824   PMID:19805117   PMID:19837037   PMID:19855129   PMID:19906857   PMID:19912887   PMID:19913010   PMID:20058232   PMID:20059953   PMID:20144603   PMID:20147377   PMID:20150232  
PMID:20211142   PMID:20214879   PMID:20237281   PMID:20362542   PMID:20374522   PMID:20437053   PMID:20530484   PMID:20550935   PMID:20644734   PMID:20819186   PMID:20890044   PMID:21138975  
PMID:21203491   PMID:21205789   PMID:21267068   PMID:21273305   PMID:21297615   PMID:21324898   PMID:21398290   PMID:21501420   PMID:21576358   PMID:21610032   PMID:21768379   PMID:21779340  
PMID:21791431   PMID:21823251   PMID:21873635   PMID:21886788   PMID:21932325   PMID:21949878   PMID:21996743   PMID:22138449   PMID:22186729   PMID:22290434   PMID:22367038   PMID:22401855  
PMID:22563733   PMID:22564683   PMID:22570637   PMID:22573620   PMID:22627278   PMID:22711280   PMID:22771905   PMID:22792072   PMID:22927467   PMID:22967998   PMID:23020089   PMID:23028343  
PMID:23098757   PMID:23207919   PMID:23240058   PMID:23277114   PMID:23382837   PMID:23389444   PMID:23426374   PMID:23515312   PMID:23555005   PMID:23595746   PMID:23610061   PMID:23615280  
PMID:23624311   PMID:23720040   PMID:23787126   PMID:23858437   PMID:23871207   PMID:23913827   PMID:23935512   PMID:23980096   PMID:24080013   PMID:24257758   PMID:24304702   PMID:24324671  
PMID:24333333   PMID:24335901   PMID:24730534   PMID:24753163   PMID:24769727   PMID:24824743   PMID:24875170   PMID:24884952   PMID:24924521   PMID:24925909   PMID:24952961   PMID:25045707  
PMID:25065405   PMID:25079316   PMID:25155577   PMID:25444235   PMID:25451153   PMID:25502142   PMID:25715397   PMID:25803486   PMID:25875108   PMID:25927996   PMID:26025865   PMID:26062936  
PMID:26212662   PMID:26218069   PMID:26284703   PMID:26341476   PMID:26388265   PMID:26440048   PMID:26475433   PMID:26522736   PMID:26530832   PMID:26545946   PMID:26628093   PMID:26670829  
PMID:26814135   PMID:26876013   PMID:26930598   PMID:26952979   PMID:27097562   PMID:27151576   PMID:27220989   PMID:27345838   PMID:27543340   PMID:27616714   PMID:27701636   PMID:27871875  
PMID:28030585   PMID:28158928   PMID:28249010   PMID:28376192   PMID:28402857   PMID:28431046   PMID:28579317   PMID:28607030   PMID:28666097   PMID:28684471   PMID:28729440   PMID:28778798  
PMID:29044103   PMID:29080681   PMID:29091026   PMID:29117559   PMID:29166577   PMID:29240767   PMID:29249622   PMID:29277702   PMID:29385729   PMID:29486165   PMID:29496358   PMID:29723194  
PMID:29803170   PMID:30076217   PMID:30169530   PMID:30273664   PMID:30333037   PMID:30348676   PMID:30352686   PMID:30471646   PMID:30590377   PMID:30595499   PMID:30651300   PMID:31017901  
PMID:31527310   PMID:31562697   PMID:31659211   PMID:31777941   PMID:31801063   PMID:31877112   PMID:31924792   PMID:31949107   PMID:31978189   PMID:32169553   PMID:32193365   PMID:32290105  
PMID:32531202   PMID:32797202  


Genomics

Comparative Map Data
Mitf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,783,966 - 97,998,321 (+)NCBIGRCm39mm39
GRCm38697,807,002 - 98,021,360 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,807,052 - 98,021,349 (+)EnsemblGRCm38mm10GRCm38
MGSCv37697,757,052 - 97,971,352 (+)NCBIGRCm37mm9NCBIm37
MGSCv36697,957,255 - 97,984,170 (+)NCBImm8
Celera699,672,554 - 99,880,690 (+)NCBICelera
Cytogenetic Map6D3NCBI
cM Map645.05NCBI
MITF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl369,739,435 - 69,968,337 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl369,739,464 - 69,968,336 (+)EnsemblGRCh38hg38GRCh38
GRCh38369,739,464 - 69,968,332 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37369,788,586 - 70,017,488 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37369,788,615 - 70,017,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36369,871,323 - 70,100,177 (+)NCBINCBI36hg18NCBI36
Build 34370,010,945 - 70,100,176NCBI
Celera369,715,972 - 69,944,858 (+)NCBI
Cytogenetic Map3p13NCBI
HuRef369,788,411 - 70,016,737 (+)NCBIHuRef
CHM1_1369,739,823 - 69,968,702 (+)NCBICHM1_1
Mitf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24130,409,020 - 130,621,145 (+)NCBI
Rnor_6.0 Ensembl4130,172,727 - 130,425,532 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04130,172,484 - 130,425,496 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04194,667,943 - 194,921,498 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44132,534,187 - 132,745,669 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14132,971,000 - 132,989,691 (+)NCBI
Celera4119,282,401 - 119,497,938 (+)NCBICelera
Cytogenetic Map4q34NCBI
Mitf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542117,947,277 - 18,154,090 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542117,948,117 - 18,157,379 (-)NCBIChiLan1.0ChiLan1.0
MITF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1371,037,671 - 71,265,445 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl371,037,665 - 71,265,445 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0369,674,064 - 69,902,078 (+)NCBIMhudiblu_PPA_v0panPan3
MITF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2021,612,927 - 21,870,578 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12021,772,147 - 21,873,545 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Mitf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366031,682,411 - 1,858,295 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MITF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1351,178,203 - 51,422,096 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11351,177,356 - 51,422,096 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21356,593,519 - 56,594,255 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MITF
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12230,747,747 - 30,971,951 (+)NCBI
ChlSab1.1 Ensembl2230,748,440 - 30,972,168 (+)Ensembl
Mitf
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247734,346,072 - 4,561,218 (+)NCBI

Position Markers
AI451023  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38698,020,889 - 98,020,969UniSTSGRCm38
MGSCv37697,970,883 - 97,970,963UniSTSGRCm37
Celera699,880,221 - 99,880,301UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
Whitehead/MRC_RH6993.71UniSTS
Z23066  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38698,018,479 - 98,018,658UniSTSGRCm38
MGSCv37697,968,473 - 97,968,652UniSTSGRCm37
Celera699,877,811 - 99,877,990UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
Whitehead_YAC6 UniSTS
Mitf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38697,991,094 - 97,991,289UniSTSGRCm38
MGSCv37697,941,088 - 97,941,283UniSTSGRCm37
Celera699,850,367 - 99,850,564UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
cM Map640.0UniSTS
Mitf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38697,941,081 - 97,941,220UniSTSGRCm38
MGSCv37697,891,075 - 97,891,214UniSTSGRCm37
Celera699,800,307 - 99,800,446UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
Mitf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D3UniSTS
Mitf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38697,993,132 - 97,994,415UniSTSGRCm38
MGSCv37697,943,126 - 97,944,409UniSTSGRCm37
Celera699,852,412 - 99,853,695UniSTS
Cytogenetic Map6D3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69260730698258933Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir148bmmu-miR-148b-3pOncomiRDBexternal_infoNANA20644734
Mir148ammu-miR-148a-3pOncomiRDBexternal_infoNANA20644734
Mir137mmu-miR-137-5pOncomiRDBexternal_infoNANA21051724
Mir137mmu-miR-137-5pOncomiRDBexternal_infoNANA18316599

Predicted Target Of
Summary Value
Count of predictions:2255
Count of miRNA genes:677
Interacting mature miRNAs:894
Transcripts:ENSMUST00000043628, ENSMUST00000043637, ENSMUST00000101123, ENSMUST00000113339, ENSMUST00000139462, ENSMUST00000144641, ENSMUST00000148233
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001178049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB009397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB018704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB061769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB221657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF222344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH009583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY632571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY632573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY632575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY964998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY152267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF733424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L22958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U19874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U19875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000043628   ⟹   ENSMUSP00000044459
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl697,991,792 - 98,018,707 (+)Ensembl
RefSeq Acc Id: ENSMUST00000043637   ⟹   ENSMUSP00000044938
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl697,807,058 - 98,021,349 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101123   ⟹   ENSMUSP00000098683
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl697,929,799 - 98,018,707 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113339   ⟹   ENSMUSP00000108965
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl697,940,918 - 98,018,707 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139462   ⟹   ENSMUSP00000123433
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl697,991,819 - 98,018,497 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148233
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl697,807,058 - 97,942,179 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203884   ⟹   ENSMUSP00000145132
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl697,807,052 - 98,018,593 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203938   ⟹   ENSMUSP00000144988
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl697,991,921 - 98,018,175 (+)Ensembl
RefSeq Acc Id: NM_001113198   ⟹   NP_001106669
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,784,019 - 97,998,319 (+)NCBI
GRCm38697,807,058 - 98,021,358 (+)NCBI
MGSCv37697,757,052 - 97,971,352 (+)RGD
Celera699,672,554 - 99,880,690 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001178049   ⟹   NP_001171520
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,906,778 - 97,998,319 (+)NCBI
GRCm38697,929,817 - 98,021,358 (+)NCBI
MGSCv37697,757,052 - 97,971,352 (+)RGD
Celera699,672,554 - 99,880,690 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_008601   ⟹   NP_032627
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,968,744 - 97,998,319 (+)NCBI
GRCm38697,991,783 - 98,021,358 (+)NCBI
MGSCv37697,757,052 - 97,971,352 (+)RGD
Celera699,672,554 - 99,880,690 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505684   ⟹   XP_006505747
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,967 - 97,998,321 (+)NCBI
GRCm38697,807,003 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505685   ⟹   XP_006505748
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,967 - 97,998,321 (+)NCBI
GRCm38697,807,002 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505689   ⟹   XP_006505752
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,906,790 - 97,998,321 (+)NCBI
GRCm38697,929,742 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505691   ⟹   XP_006505754
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,850,697 - 97,998,321 (+)NCBI
GRCm38697,873,727 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505692   ⟹   XP_006505755
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,847,299 - 97,998,321 (+)NCBI
GRCm38697,873,103 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505694   ⟹   XP_006505757
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,915,460 - 97,998,321 (+)NCBI
GRCm38697,938,499 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505695   ⟹   XP_006505758
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,968,151 - 97,998,321 (+)NCBI
GRCm38697,991,701 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321428   ⟹   XP_017176917
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,850,697 - 97,998,321 (+)NCBI
GRCm38697,873,727 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255210   ⟹   XP_030111070
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,967 - 97,998,321 (+)NCBI
GRCm38697,807,002 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255211   ⟹   XP_030111071
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,906,786 - 97,998,321 (+)NCBI
GRCm38697,929,741 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255212   ⟹   XP_030111072
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,969 - 97,998,321 (+)NCBI
GRCm38697,807,004 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255213   ⟹   XP_030111073
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,804,511 - 97,998,321 (+)NCBI
GRCm38697,827,545 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255214   ⟹   XP_030111074
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,969 - 97,998,321 (+)NCBI
GRCm38697,807,004 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165905   ⟹   XP_036021798
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,966 - 97,998,321 (+)NCBI
RefSeq Acc Id: XM_036165906   ⟹   XP_036021799
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,933,970 - 97,998,321 (+)NCBI
RefSeq Acc Id: XM_036165907   ⟹   XP_036021800
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,933,970 - 97,998,321 (+)NCBI
RefSeq Acc Id: XM_036165908   ⟹   XP_036021801
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,969 - 97,998,321 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001106669 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171520 (Get FASTA)   NCBI Sequence Viewer  
  NP_032627 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505747 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505748 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505752 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505754 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505755 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505757 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505758 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176917 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111070 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111071 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111072 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111073 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111074 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021798 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021799 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021800 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021801 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB47773 (Get FASTA)   NCBI Sequence Viewer  
  AAC52155 (Get FASTA)   NCBI Sequence Viewer  
  AAC52156 (Get FASTA)   NCBI Sequence Viewer  
  AAF63466 (Get FASTA)   NCBI Sequence Viewer  
  AAF81266 (Get FASTA)   NCBI Sequence Viewer  
  AAF81271 (Get FASTA)   NCBI Sequence Viewer  
  AAF81272 (Get FASTA)   NCBI Sequence Viewer  
  AAI08977 (Get FASTA)   NCBI Sequence Viewer  
  AAI08978 (Get FASTA)   NCBI Sequence Viewer  
  AAV34581 (Get FASTA)   NCBI Sequence Viewer  
  AAV34582 (Get FASTA)   NCBI Sequence Viewer  
  BAA32329 (Get FASTA)   NCBI Sequence Viewer  
  BAB85120 (Get FASTA)   NCBI Sequence Viewer  
  BAC35192 (Get FASTA)   NCBI Sequence Viewer  
  BAE33209 (Get FASTA)   NCBI Sequence Viewer  
  CAA80600 (Get FASTA)   NCBI Sequence Viewer  
  EDK99359 (Get FASTA)   NCBI Sequence Viewer  
  Q08874 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_032627   ⟸   NM_008601
- Peptide Label: isoform 2
- UniProtKB: Q08874 (UniProtKB/Swiss-Prot),   Q32MU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106669   ⟸   NM_001113198
- Peptide Label: isoform 1
- UniProtKB: Q08874 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171520   ⟸   NM_001178049
- Peptide Label: isoform 3
- UniProtKB: Q8C6Y4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505748   ⟸   XM_006505685
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006505747   ⟸   XM_006505684
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505755   ⟸   XM_006505692
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006505754   ⟸   XM_006505691
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006505752   ⟸   XM_006505689
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006505757   ⟸   XM_006505694
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006505758   ⟸   XM_006505695
- Peptide Label: isoform X10
- UniProtKB: Q08874 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017176917   ⟸   XM_017321428
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_030111070   ⟸   XM_030255210
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030111072   ⟸   XM_030255212
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030111074   ⟸   XM_030255214
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030111073   ⟸   XM_030255213
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030111071   ⟸   XM_030255211
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000144988   ⟸   ENSMUST00000203938
RefSeq Acc Id: ENSMUSP00000145132   ⟸   ENSMUST00000203884
RefSeq Acc Id: ENSMUSP00000123433   ⟸   ENSMUST00000139462
RefSeq Acc Id: ENSMUSP00000108965   ⟸   ENSMUST00000113339
RefSeq Acc Id: ENSMUSP00000098683   ⟸   ENSMUST00000101123
RefSeq Acc Id: ENSMUSP00000044938   ⟸   ENSMUST00000043637
RefSeq Acc Id: ENSMUSP00000044459   ⟸   ENSMUST00000043628
RefSeq Acc Id: XP_036021798   ⟸   XM_036165905
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036021801   ⟸   XM_036165908
- Peptide Label: isoform X13
RefSeq Acc Id: XP_036021800   ⟸   XM_036165907
- Peptide Label: isoform X12
RefSeq Acc Id: XP_036021799   ⟸   XM_036165906
- Peptide Label: isoform X12
Protein Domains
bHLH   MITF_TFEB_C_3_N

Promoters
RGD ID:6890528
Promoter ID:EPDNEW_M8715
Type:initiation region
Name:Mitf_1
Description:Mus musculus melanogenesis associated transcription factor ,transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38697,807,058 - 97,807,118EPDNEW
RGD ID:6839636
Promoter ID:MM_KWN:47025
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:NM_008601,   UC009DBE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36697,940,996 - 97,941,496 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104554 AgrOrtholog
Ensembl Genes ENSMUSG00000035158 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000044459 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000044938 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000098683 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108965 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000123433 UniProtKB/TrEMBL
  ENSMUSP00000144988 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000145132 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043628 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000043637 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101123 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113339 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000139462 UniProtKB/TrEMBL
  ENSMUST00000203884 UniProtKB/TrEMBL
  ENSMUST00000203938 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MiT/TFE_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MiT/TFE_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MITF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17342 UniProtKB/Swiss-Prot
MGD MGI:104554 ENTREZGENE
NCBI Gene 17342 ENTREZGENE
PANTHER PTHR45776:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MITF_TFEB_C_3_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mitf PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SV79_MOUSE UniProtKB/TrEMBL
  A0A5H1ZRM6_MOUSE UniProtKB/TrEMBL
  D6RCW2_MOUSE UniProtKB/TrEMBL
  E9PZ28_MOUSE UniProtKB/TrEMBL
  I6L9I6_MOUSE UniProtKB/TrEMBL
  MITF_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q32MU7 ENTREZGENE, UniProtKB/TrEMBL
  Q5C9J0_MOUSE UniProtKB/TrEMBL
  Q5C9J1_MOUSE UniProtKB/TrEMBL
  Q8C6Y4 ENTREZGENE, UniProtKB/TrEMBL
  Q8K421_MOUSE UniProtKB/TrEMBL
  Q8R5M9_MOUSE UniProtKB/TrEMBL
UniProt Secondary A0A0N4SVJ5 UniProtKB/Swiss-Prot
  O08885 UniProtKB/Swiss-Prot
  O88203 UniProtKB/Swiss-Prot
  Q08843 UniProtKB/Swiss-Prot
  Q3U2D2 UniProtKB/Swiss-Prot
  Q60781 UniProtKB/Swiss-Prot
  Q60782 UniProtKB/Swiss-Prot
  Q9JIJ0 UniProtKB/Swiss-Prot
  Q9JIJ1 UniProtKB/Swiss-Prot
  Q9JIJ2 UniProtKB/Swiss-Prot
  Q9JIJ3 UniProtKB/Swiss-Prot
  Q9JIJ4 UniProtKB/Swiss-Prot
  Q9JIJ5 UniProtKB/Swiss-Prot
  Q9JIJ6 UniProtKB/Swiss-Prot
  Q9JKX9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Mitf  melanogenesis associated transcription factor  Mitf  microphthalmia-associated transcription factor  Symbol and/or name change 5135510 APPROVED