Mitf (melanogenesis associated transcription factor) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Mitf (melanogenesis associated transcription factor) Mus musculus
Analyze
Symbol: Mitf
Name: melanogenesis associated transcription factor
RGD ID: 735983
MGI Page MGI
Description: Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; E-box binding activity; and protein dimerization activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including osteoclast differentiation; regulation of DNA-templated transcription; and regulation of osteoclast differentiation. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; integumental system; mesenchyme derived from neural crest; and sensory organ. Used to study Tietz syndrome; Waardenburg syndrome (multiple); ocular albinism with sensorineural deafness; osteosclerosis (multiple); and polycystic kidney disease. Human ortholog(s) of this gene implicated in Tietz syndrome; Tietze's syndrome; Waardenburg syndrome; Waardenburg syndrome type 2A; and familial melanoma. Orthologous to human MITF (melanocyte inducing transcription factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BCC2; bHLHe3; bHLHe32; black eyed white; bw; Gsfbcc; Gsfbcc2; m; MGC124309; MGC124310; mi; microphtalmia-associated transcription factor; microphthalmia-associated transcription factor; vit; Vitiligo; Wh
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,783,966 - 97,998,321 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl697,784,013 - 97,998,310 (+)EnsemblGRCm39 Ensembl
GRCm38697,807,002 - 98,021,360 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,807,052 - 98,021,349 (+)EnsemblGRCm38mm10GRCm38
MGSCv37697,757,052 - 97,971,352 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36697,957,255 - 97,984,170 (+)NCBIMGSCv36mm8
Celera699,672,554 - 99,880,690 (+)NCBICelera
Cytogenetic Map6D3NCBI
cM Map645.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinic acid  (ISO)
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinal  (ISO)
9-cis-retinoic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
afzelin  (ISO)
Alisol B  (EXP)
all-trans-retinoic acid  (EXP,ISO)
alpha-melanocyte stimulating hormone  (EXP)
alpha-pinene  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbaryl  (ISO)
carbon nanotube  (EXP)
celecoxib  (ISO)
CGP 52608  (ISO)
chaetocin  (EXP)
chlorpromazine  (ISO)
ciguatoxin CTX1B  (EXP)
ciprofloxacin  (ISO)
cisplatin  (ISO)
colforsin daropate hydrochloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
cordycepin  (EXP)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyanamide  (ISO)
cycloheximide  (EXP,ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
DDE  (ISO)
DDT  (ISO)
disodium selenite  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
emodin  (ISO)
entinostat  (ISO)
fenofibrate  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
ivermectin  (ISO)
lawsone  (EXP)
lead diacetate  (EXP)
lithium chloride  (ISO)
loliolide  (EXP)
LY294002  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melphalan  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylseleninic acid  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP)
N-acetyl-L-cysteine  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP,ISO)
N-phenylthiourea  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nonanedioic acid  (EXP)
oxidopamine  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
permethrin  (ISO)
phenylmercury acetate  (ISO)
phytol  (EXP)
pifithrin-alpha hydrobromide  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
progesterone  (ISO)
Ptaquiloside  (EXP)
quercetin  (EXP,ISO)
resorcinol  (EXP)
resveratrol  (EXP,ISO)
rotenone  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
stilbenoid  (EXP)
Sweroside  (EXP)
tamoxifen  (EXP)
taurine  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
theophylline  (EXP)
thioacetamide  (ISO)
thymol  (EXP)
thymol sulfate(1-)  (EXP)
torcetrapib  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vemurafenib  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO,ISS)
lysosomal membrane  (ISO,ISS)
nucleoplasm  (TAS)
nucleus  (IBA,IC,IDA,ISO)
protein-containing complex  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal choroid pigmentation  (IAGP)
abnormal ciliary body morphology  (IAGP)
abnormal ciliary process morphology  (IAGP)
abnormal coat/hair pigmentation  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cochlear hair cell morphology  (IAGP)
abnormal epiphyseal plate morphology  (IAGP)
abnormal estrous cycle  (IAGP)
abnormal eye development  (IAGP)
abnormal eye morphology  (IAGP)
abnormal eye physiology  (IAGP)
abnormal eye pigmentation  (IAGP)
abnormal eye size  (IAGP)
abnormal eyelid morphology  (IEA)
abnormal fertility/fecundity  (IAGP)
abnormal foot pigmentation  (IAGP)
abnormal hair follicle melanocyte morphology  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair shaft melanin granule morphology  (IEA)
abnormal Harderian gland pigmentation  (IAGP)
abnormal hearing physiology  (IAGP)
abnormal incisor morphology  (IEA)
abnormal inner ear morphology  (IAGP)
abnormal iris morphology  (IAGP)
abnormal iris pigmentation  (IAGP)
abnormal iris stromal pigmentation  (IEA)
abnormal kidney pelvis morphology  (IAGP)
abnormal Langerhans cell physiology  (IAGP)
abnormal lens morphology  (IAGP)
abnormal long bone epiphyseal plate morphology  (IAGP)
abnormal long bone metaphysis morphology  (IAGP)
abnormal loop of Henle morphology  (IAGP)
abnormal mast cell physiology  (IAGP)
abnormal melanoblast migration  (IAGP)
abnormal melanoblast morphology  (IAGP)
abnormal melanocyte morphology  (IAGP)
abnormal nursing  (IAGP)
abnormal ocular fundus morphology  (IAGP)
abnormal optic choroid morphology  (IAGP)
abnormal optic cup morphology  (IAGP)
abnormal optic fissure closure  (IAGP)
abnormal optic stalk morphology  (IAGP)
abnormal osteoclast morphology  (IAGP)
abnormal osteoclast physiology  (IAGP)
abnormal photoreceptor inner segment morphology  (IAGP)
abnormal pinna reflex  (IAGP)
abnormal posterior eye segment morphology  (IAGP)
abnormal retina development  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retina neuronal layer morphology  (IAGP)
abnormal retina photoreceptor morphology  (IAGP)
abnormal retina pigment epithelium morphology  (IAGP)
abnormal retina pigmentation  (IAGP)
abnormal rod electrophysiology  (IAGP)
abnormal scala media morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skin pigmentation  (IAGP)
abnormal spleen germinal center morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen red pulp morphology  (IAGP)
abnormal spleen white pulp morphology  (IAGP)
abnormal stria vascularis morphology  (IAGP)
abnormal vestibular saccule morphology  (IAGP)
abnormal vitreous body morphology  (IAGP)
absent coat pigmentation  (IAGP)
absent eye pigmentation  (IAGP)
absent hair follicle melanin granules  (IAGP)
absent optic nerve  (IAGP)
absent photoreceptor outer segment  (IAGP)
absent pinna reflex  (IAGP)
absent retina cone cells  (IAGP)
absent retina rod cells  (IAGP)
absent skin pigmentation  (IEA)
absent strial intermediate cells  (IAGP)
anophthalmia  (IAGP)
belly spot  (IAGP)
cataract  (IAGP)
ciliary body hypoplasia  (IAGP)
coloboma  (IAGP)
darkened coat color  (IAGP)
decreased bleeding time  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased ear pigmentation  (IAGP)
decreased eye pigmentation  (IAGP)
decreased length of long bones  (IAGP)
decreased litter size  (IAGP)
decreased mast cell number  (IAGP)
decreased melanocyte number  (IAGP)
decreased osteoclast cell number  (IAGP)
decreased serotonin level  (IAGP)
decreased survivor rate  (IAGP)
decreased tail pigmentation  (IAGP)
delayed tooth eruption  (IAGP)
dilated renal tubule  (IAGP)
diluted coat color  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
exostosis  (IAGP)
eyelids fail to open  (IAGP)
failure of tooth eruption  (IAGP)
female infertility  (IAGP)
fetal growth retardation  (IAGP)
head spot  (IAGP)
hypopigmentation  (IEA)
impaired pupillary reflex  (IEA)
increased circulating creatinine level  (IAGP)
increased glomerular capsule space  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased osteoclast cell number  (IAGP)
increased susceptibility to age-related retinal degeneration  (IAGP)
increased trabecular bone connectivity density  (IAGP)
increased width of hypertrophic chondrocyte zone  (IAGP)
iris hypoplasia  (IAGP)
irregular coat pigmentation  (IAGP)
kidney inflammation  (IAGP)
lens vacuoles  (IEA)
liver cyst  (IAGP)
male infertility  (IAGP)
microphthalmia  (IAGP)
mydriasis  (IAGP)
no abnormal phenotype detected  (IAGP)
non-pigmented tail tip  (IEA)
ocular albinism  (IAGP)
osteopetrosis  (IAGP)
osteosclerosis  (IAGP)
pancreas cyst  (IAGP)
phenotypic reversion  (IAGP)
polycystic kidney  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IEA)
reduced fertility  (IAGP)
renal interstitial fibrosis  (IAGP)
renal tubule atrophy  (IAGP)
retina detachment  (IAGP)
retina photoreceptor degeneration  (IAGP)
thin stria vascularis  (IAGP)
variable body spotting  (IEA)
variable depigmentation  (IAGP)
variegated coat color  (IAGP)
white spotting  (IAGP)
yellow coat color  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Microphthalmia-associated transcription factor and tyrosinase as markers of melanoma cells in blood of patients with melanoma. Samija I, etal., Croat Med J. 2004 Apr;45(2):142-8.
11. Tietz syndrome (hypopigmentation/deafness) caused by mutation of MITF. Smith SD, etal., J Med Genet. 2000 Jun;37(6):446-8.
12. The mutational spectrum in Waardenburg syndrome. Tassabehji M, etal., Hum Mol Genet. 1995 Nov;4(11):2131-7.
Additional References at PubMed
PMID:870607   PMID:879046   PMID:1184950   PMID:1198094   PMID:1270792   PMID:1280821   PMID:1381628   PMID:1382713   PMID:1460250   PMID:1486944   PMID:1559545   PMID:1689261  
PMID:1764248   PMID:2040452   PMID:2246770   PMID:2310824   PMID:2379821   PMID:2494194   PMID:3443296   PMID:3525691   PMID:3578491   PMID:3665767   PMID:3994857   PMID:4015615  
PMID:4092923   PMID:4392283   PMID:4761674   PMID:4963367   PMID:5021438   PMID:5088022   PMID:5424503   PMID:6049665   PMID:6127714   PMID:6264778   PMID:6403657   PMID:6696991  
PMID:7042901   PMID:7152259   PMID:7495310   PMID:7517699   PMID:7522503   PMID:7524330   PMID:7524763   PMID:7556499   PMID:7558712   PMID:7588749   PMID:7629107   PMID:7720808  
PMID:7760812   PMID:7789413   PMID:7802662   PMID:7828669   PMID:7852195   PMID:7874167   PMID:7874168   PMID:7896277   PMID:7920028   PMID:7958932   PMID:7983371   PMID:8069297  
PMID:8082834   PMID:8088952   PMID:8206731   PMID:8238251   PMID:8318738   PMID:8343963   PMID:8402531   PMID:8407885   PMID:8446583   PMID:8479820   PMID:8513335   PMID:8530057  
PMID:8578601   PMID:8603923   PMID:8622664   PMID:8630510   PMID:8631154   PMID:8631625   PMID:8631626   PMID:8695840   PMID:8749302   PMID:8776879   PMID:8789737   PMID:8792932  
PMID:8812432   PMID:8837770   PMID:8839840   PMID:8947051   PMID:8983972   PMID:8987786   PMID:9108421   PMID:9119213   PMID:9199364   PMID:9207863   PMID:9223672   PMID:9227283  
PMID:9268589   PMID:9326226   PMID:9327738   PMID:9352446   PMID:9376586   PMID:9383334   PMID:9408245   PMID:9412510   PMID:9440696   PMID:9501313   PMID:9510032   PMID:9546825  
PMID:9558376   PMID:9593634   PMID:9630426   PMID:9647758   PMID:9677380   PMID:9680380   PMID:9731055   PMID:9806836   PMID:9819381   PMID:9825864   PMID:9870544   PMID:9918847  
PMID:9931354   PMID:9949161   PMID:10036191   PMID:10320095   PMID:10349636   PMID:10350149   PMID:10361115   PMID:10381505   PMID:10385706   PMID:10400990   PMID:10567402   PMID:10586063  
PMID:10623832   PMID:10711712   PMID:10760605   PMID:10790403   PMID:10828017   PMID:10886015   PMID:10898786   PMID:10903182   PMID:10982026   PMID:11042159   PMID:11076759   PMID:11076861  
PMID:11113541   PMID:11124539   PMID:11156606   PMID:11157480   PMID:11217851   PMID:11231058   PMID:11264169   PMID:11264174   PMID:11350962   PMID:11456441   PMID:11481336   PMID:11493524  
PMID:11520113   PMID:11543611   PMID:11543618   PMID:11588059   PMID:11684011   PMID:11709556   PMID:11748141   PMID:11751862   PMID:11764295   PMID:11792706   PMID:11853768   PMID:11929848  
PMID:11930005   PMID:11955610   PMID:12028584   PMID:12039954   PMID:12086670   PMID:12093801   PMID:12128226   PMID:12217379   PMID:12220516   PMID:12235125   PMID:12393515   PMID:12456501  
PMID:12466851   PMID:12477932   PMID:12586714   PMID:12652657   PMID:12695521   PMID:12753399   PMID:12756174   PMID:12756179   PMID:12771178   PMID:13162938   PMID:14421250   PMID:14527958  
PMID:14575270   PMID:14575687   PMID:14632202   PMID:14643677   PMID:14645519   PMID:14706856   PMID:14716319   PMID:14737107   PMID:14744763   PMID:14962802   PMID:15037118   PMID:15050900  
PMID:15081122   PMID:15147727   PMID:15158462   PMID:15172970   PMID:15226356   PMID:15254223   PMID:15277223   PMID:15277526   PMID:15304486   PMID:15305064   PMID:15375155   PMID:15459106  
PMID:15466381   PMID:15492754   PMID:15572665   PMID:15576400   PMID:15618488   PMID:15618518   PMID:15619674   PMID:15715979   PMID:15716956   PMID:15729346   PMID:15782199   PMID:15937937  
PMID:15983061   PMID:16029420   PMID:16034081   PMID:16038893   PMID:16076961   PMID:16117796   PMID:16129781   PMID:16140982   PMID:16141072   PMID:16141073   PMID:16185282   PMID:16186160  
PMID:16203745   PMID:16322470   PMID:16337607   PMID:16368885   PMID:16386209   PMID:16412618   PMID:16420417   PMID:16539717   PMID:16605125   PMID:16757562   PMID:16765103   PMID:16790476  
PMID:16822840   PMID:16854970   PMID:16919269   PMID:16959241   PMID:16998588   PMID:17000761   PMID:17011173   PMID:17083486   PMID:17085443   PMID:17105730   PMID:17182576   PMID:17202193  
PMID:17247639   PMID:17403683   PMID:17403896   PMID:17438132   PMID:17442941   PMID:17478475   PMID:17516925   PMID:17516926   PMID:18006687   PMID:18089649   PMID:18191835   PMID:18202372  
PMID:18272592   PMID:18281284   PMID:18287559   PMID:18313864   PMID:18353144   PMID:18397875   PMID:18424556   PMID:18454205   PMID:18557763   PMID:18582859   PMID:18627530   PMID:18703590  
PMID:18715234   PMID:18759249   PMID:18778700   PMID:18799693   PMID:18873488   PMID:18902556   PMID:18983533   PMID:18985738   PMID:19192212   PMID:19207217   PMID:19220779   PMID:19288495  
PMID:19321441   PMID:19346468   PMID:19416500   PMID:19435791   PMID:19436707   PMID:19469902   PMID:19493314   PMID:19515996   PMID:19553286   PMID:19587010   PMID:19596317   PMID:19635938  
PMID:19659570   PMID:19666824   PMID:19805117   PMID:19837037   PMID:19855129   PMID:19906857   PMID:19912887   PMID:19913010   PMID:20058232   PMID:20059953   PMID:20144603   PMID:20147377  
PMID:20150232   PMID:20211142   PMID:20214879   PMID:20237281   PMID:20362542   PMID:20374522   PMID:20437053   PMID:20530484   PMID:20550935   PMID:20644734   PMID:20819186   PMID:20890044  
PMID:21138975   PMID:21203491   PMID:21205789   PMID:21267068   PMID:21273305   PMID:21297615   PMID:21324898   PMID:21398290   PMID:21501420   PMID:21576358   PMID:21610032   PMID:21768379  
PMID:21779340   PMID:21791431   PMID:21823251   PMID:21873635   PMID:21886788   PMID:21932325   PMID:21949878   PMID:21996743   PMID:22138449   PMID:22186729   PMID:22290434   PMID:22367038  
PMID:22401855   PMID:22563733   PMID:22564683   PMID:22570637   PMID:22573620   PMID:22627278   PMID:22711280   PMID:22771905   PMID:22792072   PMID:22927467   PMID:22967998   PMID:23020089  
PMID:23028343   PMID:23098757   PMID:23147794   PMID:23207919   PMID:23240058   PMID:23277114   PMID:23382837   PMID:23389444   PMID:23426374   PMID:23515312   PMID:23555005   PMID:23595746  
PMID:23610061   PMID:23615280   PMID:23624311   PMID:23720040   PMID:23787126   PMID:23858437   PMID:23871207   PMID:23913827   PMID:23935512   PMID:23980096   PMID:24080013   PMID:24257758  
PMID:24304702   PMID:24324671   PMID:24333333   PMID:24335901   PMID:24421398   PMID:24722296   PMID:24730534   PMID:24753163   PMID:24769727   PMID:24824743   PMID:24875170   PMID:24884952  
PMID:24924521   PMID:24925909   PMID:24952961   PMID:25045707   PMID:25065405   PMID:25079316   PMID:25155577   PMID:25444235   PMID:25451153   PMID:25466249   PMID:25502142   PMID:25689933  
PMID:25715397   PMID:25803486   PMID:25875108   PMID:25927996   PMID:26025865   PMID:26062936   PMID:26212662   PMID:26218069   PMID:26284703   PMID:26341476   PMID:26388265   PMID:26440048  
PMID:26475433   PMID:26522736   PMID:26530832   PMID:26545946   PMID:26628093   PMID:26670829   PMID:26814135   PMID:26876013   PMID:26930598   PMID:26952979   PMID:27097562   PMID:27151576  
PMID:27220989   PMID:27345838   PMID:27543340   PMID:27616714   PMID:27701636   PMID:27871875   PMID:28030585   PMID:28158928   PMID:28249010   PMID:28376192   PMID:28402857   PMID:28431046  
PMID:28579317   PMID:28607030   PMID:28666097   PMID:28684471   PMID:28729440   PMID:28778798   PMID:29044103   PMID:29080681   PMID:29091026   PMID:29117559   PMID:29166577   PMID:29240767  
PMID:29249622   PMID:29277702   PMID:29385729   PMID:29486165   PMID:29496358   PMID:29723194   PMID:29803170   PMID:30076217   PMID:30169530   PMID:30273664   PMID:30333037   PMID:30348676  
PMID:30352686   PMID:30471646   PMID:30590377   PMID:30595499   PMID:30651300   PMID:31017901   PMID:31336386   PMID:31527310   PMID:31562697   PMID:31659211   PMID:31777941   PMID:31801063  
PMID:31877112   PMID:31924792   PMID:31949107   PMID:31978189   PMID:32169553   PMID:32193365   PMID:32290105   PMID:32361183   PMID:32531202   PMID:32797202   PMID:33075808   PMID:33323974  
PMID:33428890   PMID:33795534   PMID:34160901   PMID:34233163   PMID:34274976   PMID:34757798   PMID:34787639   PMID:34849815   PMID:35108651   PMID:35348289   PMID:35372344   PMID:35442159  
PMID:35568059   PMID:36326727   PMID:36627143   PMID:36649236   PMID:36933392   PMID:37190767   PMID:37236596   PMID:37259952   PMID:37510362   PMID:37522516   PMID:37577930   PMID:37751417  
PMID:38054639   PMID:38405598   PMID:38444862   PMID:39169200   PMID:39461968   PMID:39555938  


Genomics

Comparative Map Data
Mitf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,783,966 - 97,998,321 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl697,784,013 - 97,998,310 (+)EnsemblGRCm39 Ensembl
GRCm38697,807,002 - 98,021,360 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,807,052 - 98,021,349 (+)EnsemblGRCm38mm10GRCm38
MGSCv37697,757,052 - 97,971,352 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36697,957,255 - 97,984,170 (+)NCBIMGSCv36mm8
Celera699,672,554 - 99,880,690 (+)NCBICelera
Cytogenetic Map6D3NCBI
cM Map645.05NCBI
MITF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38369,739,464 - 69,968,332 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl369,739,456 - 69,968,336 (+)EnsemblGRCh38hg38GRCh38
GRCh37369,788,615 - 70,017,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36369,871,323 - 70,100,177 (+)NCBINCBI36Build 36hg18NCBI36
Build 34370,010,945 - 70,100,176NCBI
Celera369,715,972 - 69,944,858 (+)NCBICelera
Cytogenetic Map3p13NCBI
HuRef369,788,411 - 70,016,737 (+)NCBIHuRef
CHM1_1369,739,823 - 69,968,702 (+)NCBICHM1_1
T2T-CHM13v2.0369,776,362 - 70,005,284 (+)NCBIT2T-CHM13v2.0
Mitf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84131,965,676 - 132,177,790 (+)NCBIGRCr8
mRatBN7.24130,409,020 - 130,621,145 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4130,409,217 - 130,621,145 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4135,833,861 - 136,047,084 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04131,614,906 - 131,828,127 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04130,232,868 - 130,446,103 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04130,172,484 - 130,425,496 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4130,172,727 - 130,425,532 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04194,667,943 - 194,921,498 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44132,534,187 - 132,745,669 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14132,971,000 - 132,989,691 (+)NCBI
Celera4119,282,401 - 119,497,938 (+)NCBICelera
Cytogenetic Map4q34NCBI
Mitf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542117,947,277 - 18,154,090 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542117,948,117 - 18,157,379 (-)NCBIChiLan1.0ChiLan1.0
MITF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2269,693,359 - 69,921,387 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1369,698,199 - 69,926,175 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0369,674,064 - 69,902,078 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1371,037,671 - 71,265,445 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl371,037,665 - 71,265,445 (+)Ensemblpanpan1.1panPan2
MITF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12021,772,147 - 21,873,545 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2021,612,927 - 21,870,578 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2021,826,585 - 21,857,697 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02021,883,312 - 22,101,930 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2021,886,050 - 22,101,945 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12021,572,611 - 21,603,715 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02021,921,161 - 21,952,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02021,991,588 - 22,022,704 (-)NCBIUU_Cfam_GSD_1.0
Mitf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049421,682,409 - 1,858,295 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366031,682,513 - 1,858,173 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366031,682,411 - 1,858,295 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MITF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1351,178,203 - 51,422,093 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11351,177,356 - 51,422,096 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21356,593,519 - 56,594,255 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MITF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12230,747,747 - 30,971,951 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2230,748,440 - 30,972,168 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041135,815,967 - 136,039,769 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mitf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247734,346,007 - 4,562,969 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247734,346,072 - 4,561,218 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mitf
10551 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:2255
Count of miRNA genes:677
Interacting mature miRNAs:894
Transcripts:ENSMUST00000043628, ENSMUST00000043637, ENSMUST00000101123, ENSMUST00000113339, ENSMUST00000139462, ENSMUST00000144641, ENSMUST00000148233
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69258428798235894Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675424566104480516Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675584287109584431Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686783787113521563Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676440930110441074Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675693484109693678Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92584287111981699Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681476981102176961Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse

Markers in Region
AI451023  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38698,020,889 - 98,020,969UniSTSGRCm38
MGSCv37697,970,883 - 97,970,963UniSTSGRCm37
Celera699,880,221 - 99,880,301UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
Whitehead/MRC_RH6993.71UniSTS
Z23066  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38698,018,479 - 98,018,658UniSTSGRCm38
MGSCv37697,968,473 - 97,968,652UniSTSGRCm37
Celera699,877,811 - 99,877,990UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
Whitehead_YAC6 UniSTS
Mitf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38697,991,094 - 97,991,289UniSTSGRCm38
MGSCv37697,941,088 - 97,941,283UniSTSGRCm37
Celera699,850,367 - 99,850,564UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
cM Map640.0UniSTS
Mitf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38697,941,081 - 97,941,220UniSTSGRCm38
MGSCv37697,891,075 - 97,891,214UniSTSGRCm37
Celera699,800,307 - 99,800,446UniSTS
Cytogenetic Map6D3UniSTS
cM Map640.0UniSTS
Mitf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D3UniSTS
Mitf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38697,993,132 - 97,994,415UniSTSGRCm38
MGSCv37697,943,126 - 97,944,409UniSTSGRCm37
Celera699,852,412 - 99,853,695UniSTS
Cytogenetic Map6D3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001178049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB009397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB018704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB061769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB221657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF222344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH009583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY632571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY632573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY632575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY964998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY152267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF733424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L22958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U19874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U19875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000043628   ⟹   ENSMUSP00000044459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl697,968,753 - 97,995,668 (+)Ensembl
GRCm38.p6 Ensembl697,991,792 - 98,018,707 (+)Ensembl
Ensembl Acc Id: ENSMUST00000043637   ⟹   ENSMUSP00000044938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl697,784,019 - 97,998,310 (+)Ensembl
GRCm38.p6 Ensembl697,807,058 - 98,021,349 (+)Ensembl
Ensembl Acc Id: ENSMUST00000101123   ⟹   ENSMUSP00000098683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl697,906,760 - 97,995,668 (+)Ensembl
GRCm38.p6 Ensembl697,929,799 - 98,018,707 (+)Ensembl
Ensembl Acc Id: ENSMUST00000113339   ⟹   ENSMUSP00000108965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl697,917,879 - 97,995,668 (+)Ensembl
GRCm38.p6 Ensembl697,940,918 - 98,018,707 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139462   ⟹   ENSMUSP00000123433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl697,968,780 - 97,995,458 (+)Ensembl
GRCm38.p6 Ensembl697,991,819 - 98,018,497 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl697,784,019 - 97,919,140 (+)Ensembl
GRCm38.p6 Ensembl697,807,058 - 97,942,179 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203884   ⟹   ENSMUSP00000145132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl697,784,013 - 97,995,554 (+)Ensembl
GRCm38.p6 Ensembl697,807,052 - 98,018,593 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203938   ⟹   ENSMUSP00000144988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl697,968,882 - 97,995,136 (+)Ensembl
GRCm38.p6 Ensembl697,991,921 - 98,018,175 (+)Ensembl
RefSeq Acc Id: NM_001113198   ⟹   NP_001106669
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,784,019 - 97,998,310 (+)NCBI
GRCm38697,807,058 - 98,021,358 (+)NCBI
MGSCv37697,757,052 - 97,971,352 (+)RGD
Celera699,672,554 - 99,880,690 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001178049   ⟹   NP_001171520
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,906,815 - 97,998,310 (+)NCBI
GRCm38697,929,817 - 98,021,358 (+)NCBI
MGSCv37697,757,052 - 97,971,352 (+)RGD
Celera699,672,554 - 99,880,690 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001410051   ⟹   NP_001396980
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,784,019 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_001410052   ⟹   NP_001396981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,784,019 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_001410053   ⟹   NP_001396982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,906,815 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_001410054   ⟹   NP_001396983
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,784,019 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_001410055   ⟹   NP_001396984
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,804,246 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_001410056   ⟹   NP_001396985
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,784,019 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_001410057   ⟹   NP_001396986
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,784,019 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_001410058   ⟹   NP_001396987
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,784,019 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_001410059   ⟹   NP_001396988
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,968,744 - 97,998,310 (+)NCBI
RefSeq Acc Id: NM_008601   ⟹   NP_032627
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,968,744 - 97,998,310 (+)NCBI
GRCm38697,991,783 - 98,021,358 (+)NCBI
MGSCv37697,757,052 - 97,971,352 (+)RGD
Celera699,672,554 - 99,880,690 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505689   ⟹   XP_006505752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,906,790 - 97,998,321 (+)NCBI
GRCm38697,929,742 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505691   ⟹   XP_006505754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,850,697 - 97,998,321 (+)NCBI
GRCm38697,873,727 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505692   ⟹   XP_006505755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,847,299 - 97,998,321 (+)NCBI
GRCm38697,873,103 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505694   ⟹   XP_006505757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,915,460 - 97,998,321 (+)NCBI
GRCm38697,938,499 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505695   ⟹   XP_006505758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,968,151 - 97,998,321 (+)NCBI
GRCm38697,991,701 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321428   ⟹   XP_017176917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,850,697 - 97,998,321 (+)NCBI
GRCm38697,873,727 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255210   ⟹   XP_030111070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,967 - 97,998,321 (+)NCBI
GRCm38697,807,002 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255213   ⟹   XP_030111073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,804,511 - 97,998,321 (+)NCBI
GRCm38697,827,545 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255214   ⟹   XP_030111074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,969 - 97,998,321 (+)NCBI
GRCm38697,807,004 - 98,021,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165905   ⟹   XP_036021798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,783,966 - 97,998,321 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165906   ⟹   XP_036021799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,933,970 - 97,998,321 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165907   ⟹   XP_036021800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39697,933,970 - 97,998,321 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001106669 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171520 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396980 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396981 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396982 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396983 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396984 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396985 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396986 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396987 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396988 (Get FASTA)   NCBI Sequence Viewer  
  NP_032627 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505752 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505754 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505755 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505757 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505758 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176917 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111070 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111073 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111074 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021798 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021799 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021800 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB47773 (Get FASTA)   NCBI Sequence Viewer  
  AAC52155 (Get FASTA)   NCBI Sequence Viewer  
  AAC52156 (Get FASTA)   NCBI Sequence Viewer  
  AAF63466 (Get FASTA)   NCBI Sequence Viewer  
  AAF81266 (Get FASTA)   NCBI Sequence Viewer  
  AAF81271 (Get FASTA)   NCBI Sequence Viewer  
  AAF81272 (Get FASTA)   NCBI Sequence Viewer  
  AAI08977 (Get FASTA)   NCBI Sequence Viewer  
  AAI08978 (Get FASTA)   NCBI Sequence Viewer  
  AAV34581 (Get FASTA)   NCBI Sequence Viewer  
  AAV34582 (Get FASTA)   NCBI Sequence Viewer  
  BAA32329 (Get FASTA)   NCBI Sequence Viewer  
  BAB85120 (Get FASTA)   NCBI Sequence Viewer  
  BAC35192 (Get FASTA)   NCBI Sequence Viewer  
  BAE33209 (Get FASTA)   NCBI Sequence Viewer  
  CAA80600 (Get FASTA)   NCBI Sequence Viewer  
  EDK99359 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000044459
  ENSMUSP00000044459.7
  ENSMUSP00000044938
  ENSMUSP00000044938.8
  ENSMUSP00000098683
  ENSMUSP00000098683.4
  ENSMUSP00000108965
  ENSMUSP00000108965.2
  ENSMUSP00000123433.2
  ENSMUSP00000144988
  ENSMUSP00000144988.2
  ENSMUSP00000145132
  ENSMUSP00000145132.2
GenBank Protein Q08874 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032627   ⟸   NM_008601
- Peptide Label: isoform 2
- UniProtKB: Q32MU7 (UniProtKB/TrEMBL),   A0A0N4SV79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106669   ⟸   NM_001113198
- Peptide Label: isoform 1
- UniProtKB: Q9JIJ6 (UniProtKB/Swiss-Prot),   Q9JIJ5 (UniProtKB/Swiss-Prot),   Q9JIJ4 (UniProtKB/Swiss-Prot),   Q9JIJ3 (UniProtKB/Swiss-Prot),   Q9JIJ2 (UniProtKB/Swiss-Prot),   Q9JIJ1 (UniProtKB/Swiss-Prot),   Q9JIJ0 (UniProtKB/Swiss-Prot),   Q60782 (UniProtKB/Swiss-Prot),   Q60781 (UniProtKB/Swiss-Prot),   Q3U2D2 (UniProtKB/Swiss-Prot),   Q08843 (UniProtKB/Swiss-Prot),   O88203 (UniProtKB/Swiss-Prot),   O08885 (UniProtKB/Swiss-Prot),   A0A0N4SVJ5 (UniProtKB/Swiss-Prot),   Q9JKX9 (UniProtKB/Swiss-Prot),   Q08874 (UniProtKB/Swiss-Prot),   E9PZ28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171520   ⟸   NM_001178049
- Peptide Label: isoform 3
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505755   ⟸   XM_006505692
- Peptide Label: isoform X8
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505754   ⟸   XM_006505691
- Peptide Label: isoform X6
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505752   ⟸   XM_006505689
- Peptide Label: isoform X4
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505757   ⟸   XM_006505694
- Peptide Label: isoform X8
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505758   ⟸   XM_006505695
- Peptide Label: isoform X10
- UniProtKB: A0A0N4SV79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176917   ⟸   XM_017321428
- Peptide Label: isoform X7
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030111070   ⟸   XM_030255210
- Peptide Label: isoform X3
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030111074   ⟸   XM_030255214
- Peptide Label: isoform X9
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030111073   ⟸   XM_030255213
- Peptide Label: isoform X8
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000144988   ⟸   ENSMUST00000203938
Ensembl Acc Id: ENSMUSP00000145132   ⟸   ENSMUST00000203884
Ensembl Acc Id: ENSMUSP00000123433   ⟸   ENSMUST00000139462
Ensembl Acc Id: ENSMUSP00000108965   ⟸   ENSMUST00000113339
Ensembl Acc Id: ENSMUSP00000098683   ⟸   ENSMUST00000101123
Ensembl Acc Id: ENSMUSP00000044938   ⟸   ENSMUST00000043637
Ensembl Acc Id: ENSMUSP00000044459   ⟸   ENSMUST00000043628
RefSeq Acc Id: XP_036021798   ⟸   XM_036165905
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036021800   ⟸   XM_036165907
- Peptide Label: isoform X12
- UniProtKB: A0A0N4SV79 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036021799   ⟸   XM_036165906
- Peptide Label: isoform X12
- UniProtKB: A0A0N4SV79 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396983   ⟸   NM_001410054
- Peptide Label: isoform 7
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396981   ⟸   NM_001410052
- Peptide Label: isoform 5
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL),   A0A5H1ZRM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396985   ⟸   NM_001410056
- Peptide Label: isoform 9
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396980   ⟸   NM_001410051
- Peptide Label: isoform 4
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396986   ⟸   NM_001410057
- Peptide Label: isoform 10
RefSeq Acc Id: NP_001396987   ⟸   NM_001410058
- Peptide Label: isoform 11
- UniProtKB: A0A0N4SV79 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396984   ⟸   NM_001410055
- Peptide Label: isoform 8
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396982   ⟸   NM_001410053
- Peptide Label: isoform 6
- UniProtKB: E9PZ28 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396988   ⟸   NM_001410059
- Peptide Label: isoform 12 precursor
- UniProtKB: A0A0N4SV79 (UniProtKB/TrEMBL),   I6L9I6 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08874-F1-model_v2 AlphaFold Q08874 1-526 view protein structure

Promoters
RGD ID:6890528
Promoter ID:EPDNEW_M8715
Type:initiation region
Name:Mitf_1
Description:Mus musculus melanogenesis associated transcription factor ,transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38697,807,058 - 97,807,118EPDNEW
RGD ID:6839636
Promoter ID:MM_KWN:47025
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:NM_008601,   UC009DBE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36697,940,996 - 97,941,496 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104554 AgrOrtholog
Ensembl Genes ENSMUSG00000035158 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043628 ENTREZGENE
  ENSMUST00000043628.13 UniProtKB/Swiss-Prot
  ENSMUST00000043637 ENTREZGENE
  ENSMUST00000043637.14 UniProtKB/Swiss-Prot
  ENSMUST00000101123 ENTREZGENE
  ENSMUST00000101123.10 UniProtKB/Swiss-Prot
  ENSMUST00000113339 ENTREZGENE
  ENSMUST00000113339.8 UniProtKB/TrEMBL
  ENSMUST00000139462.2 UniProtKB/TrEMBL
  ENSMUST00000203884 ENTREZGENE
  ENSMUST00000203884.3 UniProtKB/TrEMBL
  ENSMUST00000203938 ENTREZGENE
  ENSMUST00000203938.2 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MiT/TFE_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MiT/TFE_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17342 UniProtKB/Swiss-Prot
MGD MGI:104554 ENTREZGENE
NCBI Gene 17342 ENTREZGENE
PANTHER MIP04163P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45776:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MITF_TFEB_C_3_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mitf PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SV79 ENTREZGENE, UniProtKB/TrEMBL
  A0A0N4SVJ5 ENTREZGENE
  A0A5H1ZRM6 ENTREZGENE, UniProtKB/TrEMBL
  D6RCW2_MOUSE UniProtKB/TrEMBL
  E9PZ28 ENTREZGENE, UniProtKB/TrEMBL
  I6L9I6 ENTREZGENE, UniProtKB/TrEMBL
  MITF_MOUSE UniProtKB/Swiss-Prot
  O08885 ENTREZGENE
  O88203 ENTREZGENE
  Q08843 ENTREZGENE
  Q08874 ENTREZGENE
  Q32MU7 ENTREZGENE, UniProtKB/TrEMBL
  Q3U2D2 ENTREZGENE
  Q5C9J0_MOUSE UniProtKB/TrEMBL
  Q5C9J1_MOUSE UniProtKB/TrEMBL
  Q60781 ENTREZGENE
  Q60782 ENTREZGENE
  Q8C6Y4_MOUSE UniProtKB/TrEMBL
  Q8K421_MOUSE UniProtKB/TrEMBL
  Q8R5M9_MOUSE UniProtKB/TrEMBL
  Q9JIJ0 ENTREZGENE
  Q9JIJ1 ENTREZGENE
  Q9JIJ2 ENTREZGENE
  Q9JIJ3 ENTREZGENE
  Q9JIJ4 ENTREZGENE
  Q9JIJ5 ENTREZGENE
  Q9JIJ6 ENTREZGENE
  Q9JKX9 ENTREZGENE
UniProt Secondary A0A0N4SVJ5 UniProtKB/Swiss-Prot
  O08885 UniProtKB/Swiss-Prot
  O88203 UniProtKB/Swiss-Prot
  Q08843 UniProtKB/Swiss-Prot
  Q3U2D2 UniProtKB/Swiss-Prot
  Q60781 UniProtKB/Swiss-Prot
  Q60782 UniProtKB/Swiss-Prot
  Q9JIJ0 UniProtKB/Swiss-Prot
  Q9JIJ1 UniProtKB/Swiss-Prot
  Q9JIJ2 UniProtKB/Swiss-Prot
  Q9JIJ3 UniProtKB/Swiss-Prot
  Q9JIJ4 UniProtKB/Swiss-Prot
  Q9JIJ5 UniProtKB/Swiss-Prot
  Q9JIJ6 UniProtKB/Swiss-Prot
  Q9JKX9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Mitf  melanogenesis associated transcription factor  Mitf  microphthalmia-associated transcription factor  Symbol and/or name change 5135510 APPROVED