Homer3 (homer scaffolding protein 3) - Rat Genome Database
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Gene: Homer3 (homer scaffolding protein 3) Mus musculus
Analyze
Symbol: Homer3
Name: homer scaffolding protein 3
RGD ID: 735853
MGI Page MGI
Description: Exhibits protein C-terminus binding activity and protein domain specific binding activity. Involved in regulation of postsynaptic neurotransmitter receptor activity. Localizes to several cellular components, including basal part of cell; glutamatergic synapse; and postsynaptic density. Orthologous to human HOMER3 (homer scaffold protein 3); PARTICIPATES IN glutamate signaling pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AW146114; homer homolog 3; homer protein homolog 3; homer, neuronal immediate early gene, 3; homer-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,735,529 - 70,747,011 (+)NCBIGRCm39mm39
GRCm38870,282,880 - 70,294,361 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,282,827 - 70,294,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,806,898 - 72,818,260 (+)NCBIGRCm37mm9NCBIm37
MGSCv36873,212,039 - 73,223,342 (+)NCBImm8
Celera872,839,497 - 72,850,859 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:9808459   PMID:10349636   PMID:10493740   PMID:11042159   PMID:11076861   PMID:11418862   PMID:12477932   PMID:12520002   PMID:12860966   PMID:14610273   PMID:15116392  
PMID:15294147   PMID:15489334   PMID:15782199   PMID:16098226   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16602821   PMID:16944949   PMID:16959763   PMID:16979624   PMID:18218901  
PMID:18387811   PMID:18480293   PMID:18799693   PMID:19554387   PMID:21677750   PMID:21873635   PMID:22486777   PMID:22561452   PMID:23911326   PMID:24530450   PMID:26748090   PMID:27507650  
PMID:28671696   PMID:29111324   PMID:29467473   PMID:31040226   PMID:31319381   PMID:32070057   PMID:32325033  


Genomics

Comparative Map Data
Homer3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,735,529 - 70,747,011 (+)NCBIGRCm39mm39
GRCm38870,282,880 - 70,294,361 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,282,827 - 70,294,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,806,898 - 72,818,260 (+)NCBIGRCm37mm9NCBIm37
MGSCv36873,212,039 - 73,223,342 (+)NCBImm8
Celera872,839,497 - 72,850,859 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
HOMER3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1918,929,201 - 18,941,261 (-)EnsemblGRCh38hg38GRCh38
GRCh381918,929,201 - 18,941,258 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371919,040,010 - 19,052,041 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,901,012 - 18,912,983 (-)NCBINCBI36hg18NCBI36
Build 341918,901,011 - 18,912,983NCBI
Celera1918,944,833 - 18,956,865 (-)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1918,604,424 - 18,624,135 (-)NCBIHuRef
CHM1_11919,039,677 - 19,051,708 (-)NCBICHM1_1
Homer3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,880,447 - 20,890,968 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,881,518 - 20,890,949 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,732,220 - 20,742,730 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,617,526 - 19,624,915 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11619,617,523 - 19,624,913 (-)NCBI
Celera1619,323,520 - 19,330,908 (-)NCBICelera
Cytogenetic Map16p14NCBI
Homer3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,755,367 - 2,760,198 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,754,970 - 2,760,198 (+)NCBIChiLan1.0ChiLan1.0
HOMER3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11919,374,442 - 19,386,161 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,374,442 - 19,385,392 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01918,367,191 - 18,379,454 (-)NCBIMhudiblu_PPA_v0panPan3
HOMER3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2044,179,153 - 44,186,814 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12044,179,145 - 44,186,814 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Homer3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365962,406,427 - 2,413,651 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOMER3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,913,979 - 58,922,475 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,913,949 - 58,922,474 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,714,495 - 58,721,277 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOMER3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,385,176 - 17,396,506 (-)NCBI
ChlSab1.1 Ensembl617,385,175 - 17,394,319 (-)Ensembl
Homer3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,970,739 - 1,977,750 (-)NCBI

Position Markers
AW146114  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,293,221 - 70,293,370UniSTSGRCm38
MGSCv37872,817,120 - 72,817,269UniSTSGRCm37
Celera872,849,719 - 72,849,868UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8741.13UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2698
Count of miRNA genes:604
Interacting mature miRNAs:743
Transcripts:ENSMUST00000003669, ENSMUST00000087467, ENSMUST00000110124, ENSMUST00000135368, ENSMUST00000135692, ENSMUST00000140212, ENSMUST00000143528, ENSMUST00000155711
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001146153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF093261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU054773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU707796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN539202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX208892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000003669   ⟹   ENSMUSP00000003669
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,285,246 - 70,294,353 (+)Ensembl
RefSeq Acc Id: ENSMUST00000087467   ⟹   ENSMUSP00000084735
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,282,827 - 70,286,530 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110124   ⟹   ENSMUSP00000105751
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,282,999 - 70,294,361 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135368   ⟹   ENSMUSP00000137560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,291,076 - 70,293,469 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,289,174 - 70,291,603 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140212   ⟹   ENSMUSP00000117033
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,282,827 - 70,294,361 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143528
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,285,931 - 70,291,738 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155711
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,283,034 - 70,286,302 (+)Ensembl
RefSeq Acc Id: NM_001146153   ⟹   NP_001139625
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,649 - 70,747,011 (+)NCBI
GRCm38870,282,999 - 70,294,361 (+)NCBI
MGSCv37872,806,898 - 72,818,260 (+)RGD
Celera872,839,497 - 72,850,859 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011984   ⟹   NP_036114
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,649 - 70,747,011 (+)NCBI
GRCm38870,282,999 - 70,294,361 (+)NCBI
MGSCv37872,806,898 - 72,818,260 (+)RGD
Celera872,839,497 - 72,850,859 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509679   ⟹   XP_006509742
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,529 - 70,747,007 (+)NCBI
GRCm38870,282,989 - 70,294,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006509680   ⟹   XP_006509743
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,763 - 70,747,007 (+)NCBI
GRCm38870,283,113 - 70,294,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006509681   ⟹   XP_006509744
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,534 - 70,747,007 (+)NCBI
GRCm38870,282,880 - 70,294,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243587   ⟹   XP_030099447
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,742 - 70,747,007 (+)NCBI
GRCm38870,283,092 - 70,294,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243588   ⟹   XP_030099448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,543 - 70,747,007 (+)NCBI
GRCm38870,282,888 - 70,294,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243589   ⟹   XP_030099449
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,529 - 70,747,007 (+)NCBI
GRCm38870,282,996 - 70,294,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154060   ⟹   XP_036009953
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,761 - 70,747,007 (+)NCBI
RefSeq Acc Id: XM_036154061   ⟹   XP_036009954
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,763 - 70,747,007 (+)NCBI
RefSeq Acc Id: XM_036154062   ⟹   XP_036009955
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,761 - 70,747,007 (+)NCBI
RefSeq Acc Id: XM_036154063   ⟹   XP_036009956
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,529 - 70,747,007 (+)NCBI
RefSeq Acc Id: XM_036154064   ⟹   XP_036009957
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,759 - 70,747,007 (+)NCBI
RefSeq Acc Id: XR_003947286
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,543 - 70,747,007 (+)NCBI
GRCm38870,282,888 - 70,294,357 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934832
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,761 - 70,747,007 (+)NCBI
RefSeq Acc Id: XR_004934833
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,763 - 70,747,007 (+)NCBI
RefSeq Acc Id: XR_004934834
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39870,735,529 - 70,747,007 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_036114   ⟸   NM_011984
- Peptide Label: isoform 2
- UniProtKB: Q99JP6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001139625   ⟸   NM_001146153
- Peptide Label: isoform 1
- UniProtKB: Q99JP6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509744   ⟸   XM_006509681
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006509742   ⟸   XM_006509679
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006509743   ⟸   XM_006509680
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030099448   ⟸   XM_030243588
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030099449   ⟸   XM_030243589
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030099447   ⟸   XM_030243587
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000105751   ⟸   ENSMUST00000110124
RefSeq Acc Id: ENSMUSP00000084735   ⟸   ENSMUST00000087467
RefSeq Acc Id: ENSMUSP00000137560   ⟸   ENSMUST00000135368
RefSeq Acc Id: ENSMUSP00000003669   ⟸   ENSMUST00000003669
RefSeq Acc Id: ENSMUSP00000117033   ⟸   ENSMUST00000140212
RefSeq Acc Id: XP_036009956   ⟸   XM_036154063
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036009957   ⟸   XM_036154064
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036009953   ⟸   XM_036154060
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036009955   ⟸   XM_036154062
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036009954   ⟸   XM_036154061
- Peptide Label: isoform X3
Protein Domains
WH1

Promoters
RGD ID:8667293
Promoter ID:EPDNEW_M11678
Type:initiation region
Name:Homer3_1
Description:Mus musculus homer scaffolding protein 3 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,283,029 - 70,283,089EPDNEW
RGD ID:6843294
Promoter ID:MM_KWN:54687
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001146153,   OTTMUST00000052955,   OTTMUST00000052957,   OTTMUST00000052958
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,806,496 - 72,807,037 (+)MPROMDB
RGD ID:6843296
Promoter ID:MM_KWN:54690
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:OTTMUST00000074360
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,813,251 - 72,813,751 (+)MPROMDB
RGD ID:6843295
Promoter ID:MM_KWN:54691
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000067557
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,814,201 - 72,815,417 (+)MPROMDB
RGD ID:6848302
Promoter ID:MM_ACW:47817
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:HOMER3.JSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36872,816,796 - 72,817,457 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347359 AgrOrtholog
Ensembl Genes ENSMUSG00000003573 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000003669 UniProtKB/Swiss-Prot
  ENSMUSP00000084735 UniProtKB/TrEMBL
  ENSMUSP00000105751 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117033 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000137560 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000003669 UniProtKB/Swiss-Prot
  ENSMUST00000087467 UniProtKB/TrEMBL
  ENSMUST00000110124 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000135368 UniProtKB/TrEMBL
  ENSMUST00000140212 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homer_EVH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH1/EVH1_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26558 UniProtKB/Swiss-Prot
MGD MGI:1347359 ENTREZGENE
NCBI Gene 26558 ENTREZGENE
Pfam WH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Homer3 PhenoGen
PROSITE WH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.388127 ENTREZGENE
  Mm.440659 ENTREZGENE
UniProt HOME3_MOUSE UniProtKB/Swiss-Prot
  J3QQ00_MOUSE UniProtKB/TrEMBL
  Q501M9_MOUSE UniProtKB/TrEMBL
  Q99JP6 ENTREZGENE
UniProt Secondary D3Z6N9 UniProtKB/Swiss-Prot
  Q9Z215 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Homer3  homer scaffolding protein 3    homer homolog 3 (Drosophila)  Symbol and/or name change 5135510 APPROVED