Cct4 (chaperonin containing Tcp1, subunit 4 (delta)) - Rat Genome Database

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Gene: Cct4 (chaperonin containing Tcp1, subunit 4 (delta)) Mus musculus
Analyze
Symbol: Cct4
Name: chaperonin containing Tcp1, subunit 4 (delta)
RGD ID: 735766
MGI Page MGI
Description: Predicted to enable protein folding chaperone and unfolded protein binding activity. Acts upstream of or within binding activity of sperm to zona pellucida and toxin transport. Located in cell body. Part of chaperonin-containing T-complex and zona pellucida receptor complex. Is expressed in several structures, including adrenal gland; brain; cardiovascular system; genitourinary system; and gut. Orthologous to human CCT4 (chaperonin containing TCP1 subunit 4); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2610204B21Rik; A4; A45; C78323; CCT-delta; Cctd; chaperonin subunit 4 (delta); T complex protein 1, delta; T-complex protein 1 subunit delta; TCP-1 delta; TCP-1-delta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15495  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,940,593 - 22,953,336 (+)NCBIGRCm39mm39
GRCm39 Ensembl1122,940,519 - 22,953,780 (+)Ensembl
GRCm381122,990,593 - 23,003,336 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,990,519 - 23,003,780 (+)EnsemblGRCm38mm10GRCm38
MGSCv371122,890,593 - 22,903,336 (+)NCBIGRCm37mm9NCBIm37
MGSCv361122,890,593 - 22,903,336 (+)NCBImm8
Celera1125,126,226 - 25,138,969 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:7828721   PMID:7919332   PMID:8661059   PMID:8889548   PMID:9250675   PMID:10349636   PMID:10922068   PMID:10954701   PMID:11042159   PMID:11076861   PMID:11532003   PMID:11812828  
PMID:12174196   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18307411   PMID:18799693   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:21880732   PMID:22083510   PMID:22922362   PMID:23716698   PMID:23872636   PMID:24194600   PMID:24457600   PMID:25737280   PMID:25755282   PMID:26496610   PMID:28378742  
PMID:28671696   PMID:29530978   PMID:30333137   PMID:30457570   PMID:30562941   PMID:30595499   PMID:30713523   PMID:31162944   PMID:32325033   PMID:32434143  


Genomics

Comparative Map Data
Cct4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,940,593 - 22,953,336 (+)NCBIGRCm39mm39
GRCm39 Ensembl1122,940,519 - 22,953,780 (+)Ensembl
GRCm381122,990,593 - 23,003,336 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,990,519 - 23,003,780 (+)EnsemblGRCm38mm10GRCm38
MGSCv371122,890,593 - 22,903,336 (+)NCBIGRCm37mm9NCBIm37
MGSCv361122,890,593 - 22,903,336 (+)NCBImm8
Celera1125,126,226 - 25,138,969 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.25NCBI
CCT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl261,868,085 - 61,888,671 (-)EnsemblGRCh38hg38GRCh38
GRCh38261,868,085 - 61,888,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37262,095,220 - 62,115,806 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,948,766 - 61,969,295 (-)NCBINCBI36hg18NCBI36
Build 34262,006,913 - 62,027,442NCBI
Celera261,940,173 - 61,960,736 (-)NCBI
Cytogenetic Map2p15NCBI
HuRef261,835,217 - 61,855,722 (-)NCBIHuRef
CHM1_1262,025,224 - 62,045,751 (-)NCBICHM1_1
Cct4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21496,991,853 - 97,004,732 (+)NCBI
Rnor_6.0 Ensembl14107,767,392 - 107,780,270 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.014107,767,392 - 107,780,270 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014107,843,411 - 107,856,260 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414103,675,110 - 103,687,893 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114103,694,320 - 103,707,104 (+)NCBI
Celera1495,973,133 - 95,985,983 (+)NCBICelera
Cytogenetic Map14q22NCBI
Cct4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,088,949 - 22,108,514 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,088,949 - 22,108,514 (+)NCBIChiLan1.0ChiLan1.0
CCT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A63,084,090 - 63,104,530 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A63,084,090 - 63,105,216 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A61,950,477 - 61,970,783 (-)NCBIMhudiblu_PPA_v0panPan3
CCT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,859,148 - 61,874,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,859,245 - 61,874,389 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1061,748,927 - 61,763,778 (-)NCBI
ROS_Cfam_1.01062,867,889 - 62,882,584 (-)NCBI
UMICH_Zoey_3.11062,551,782 - 62,566,434 (-)NCBI
UNSW_CanFamBas_1.01062,855,534 - 62,870,428 (-)NCBI
UU_Cfam_GSD_1.01063,151,020 - 63,165,931 (-)NCBI
Cct4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,330,016 - 21,346,300 (+)NCBI
SpeTri2.0NW_0049364917,224,989 - 7,241,348 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl379,924,507 - 79,946,236 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1379,924,338 - 79,941,926 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2383,760,065 - 83,777,463 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,086,932 - 45,106,922 (+)NCBI
ChlSab1.1 Ensembl1445,086,920 - 45,111,271 (+)Ensembl
Vero_WHO_p1.0NW_02366604566,727,959 - 66,748,110 (-)NCBI
Cct4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483346,071 - 62,665 (+)NCBI

Position Markers
UniSTS:236537  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,004,236 - 23,004,333UniSTSGRCm38
MGSCv371122,904,236 - 22,904,333UniSTSGRCm37
Celera1125,139,869 - 25,139,966UniSTS
Cytogenetic Map11A3.2UniSTS
RH126346  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,005,580 - 23,005,810UniSTSGRCm38
MGSCv371122,905,580 - 22,905,810UniSTSGRCm37
Celera1125,141,213 - 25,141,443UniSTS
Cytogenetic Map11A3.2UniSTS
UniSTS:225331  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,003,203 - 23,003,284UniSTSGRCm38
MGSCv371122,903,203 - 22,903,284UniSTSGRCm37
Celera1125,138,836 - 25,138,917UniSTS
Cytogenetic Map11A3.2UniSTS
Cct4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.2UniSTS
cM Map1113.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123930487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11126026374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11126026374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11126026374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1127705234277232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11272035536721472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11330000034600000Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11330000044200000Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11470000046400000Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11530000035200000Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11693027733966219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11842212142422260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11895609742956218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11906178043061942Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111100123245001464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111100123245001464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111231863740060013Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111868778952687889Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111868778952687889Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111868778952687889Mouse
12801460Intim2_mintima modifier 2 (mouse)111868778952687889Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111939175053391888Mouse
14746971Manh70_mmandible shape 70 (mouse)112001506354015063Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2127257955272579Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1967
Count of miRNA genes:721
Interacting mature miRNAs:931
Transcripts:ENSMUST00000020562, ENSMUST00000145912, ENSMUST00000173853, ENSMUST00000173867, ENSMUST00000174047, ENSMUST00000174244, ENSMUST00000174659, ENSMUST00000174689, ENSMUST00000174746
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB022157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX001008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L25913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z31554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020562   ⟹   ENSMUSP00000020562
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1122,990,650 - 23,003,151 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145912
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1123,000,937 - 23,001,619 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173853   ⟹   ENSMUSP00000133677
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1122,990,626 - 22,994,389 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173867   ⟹   ENSMUSP00000133523
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1122,990,519 - 23,003,780 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174047   ⟹   ENSMUSP00000134248
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1122,990,650 - 22,997,096 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174244
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1122,990,639 - 22,999,876 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174659   ⟹   ENSMUSP00000133667
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1122,990,652 - 22,997,149 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174689
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1123,001,934 - 23,002,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174746
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1122,995,624 - 22,997,101 (+)Ensembl
RefSeq Acc Id: NM_009837   ⟹   NP_033967
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391122,940,593 - 22,953,336 (+)NCBI
GRCm381122,990,593 - 23,003,336 (+)ENTREZGENE
MGSCv371122,890,593 - 22,903,336 (+)RGD
Celera1125,126,226 - 25,138,969 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033967   ⟸   NM_009837
- UniProtKB: P80315 (UniProtKB/Swiss-Prot),   Q564F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000020562   ⟸   ENSMUST00000020562
RefSeq Acc Id: ENSMUSP00000133667   ⟸   ENSMUST00000174659
RefSeq Acc Id: ENSMUSP00000134248   ⟸   ENSMUST00000174047
RefSeq Acc Id: ENSMUSP00000133677   ⟸   ENSMUST00000173853
RefSeq Acc Id: ENSMUSP00000133523   ⟸   ENSMUST00000173867

Promoters
RGD ID:6820587
Promoter ID:MM_KWN:6652
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_009837,   UC007IEN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361122,890,259 - 22,890,759 (+)MPROMDB
RGD ID:8674094
Promoter ID:EPDNEW_M15078
Type:initiation region
Name:Cct4_1
Description:Mus musculus chaperonin containing Tcp1, subunit 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381122,990,626 - 22,990,686EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104689 AgrOrtholog
Ensembl Genes ENSMUSG00000007739 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000020562 UniProtKB/TrEMBL
  ENSMUSP00000133523 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000133667 UniProtKB/TrEMBL
  ENSMUSP00000133677 UniProtKB/TrEMBL
  ENSMUSP00000134248 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020562 UniProtKB/TrEMBL
  ENSMUST00000173853 UniProtKB/TrEMBL
  ENSMUST00000173867 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000174047 UniProtKB/TrEMBL
  ENSMUST00000174659 UniProtKB/TrEMBL
Gene3D-CATH 1.10.560.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.50.7.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chap_CCT_delta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chaperone_TCP-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chaperonin_TCP-1_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cpn60/TCP-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GroEL-like_apical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GROEL-like_equatorial_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP-1-like_intermed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12464 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104689 ENTREZGENE
NCBI Gene 12464 ENTREZGENE
Pfam Cpn60_TCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cct4 PhenoGen
PRINTS TCOMPLEXTCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TCP1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCP1_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48592 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52029 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54849 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs chap_CCT_delta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UXF3_MOUSE UniProtKB/TrEMBL
  G3UXG2_MOUSE UniProtKB/TrEMBL
  G3UYW5_MOUSE UniProtKB/TrEMBL
  G5E839_MOUSE UniProtKB/TrEMBL
  P80315 ENTREZGENE
  Q3TII0_MOUSE UniProtKB/TrEMBL
  Q3UJZ8_MOUSE UniProtKB/TrEMBL
  Q564F4 ENTREZGENE, UniProtKB/TrEMBL
  TCPD_MOUSE UniProtKB/Swiss-Prot