Ptprz1 (protein tyrosine phosphatase, receptor type Z, polypeptide 1) - Rat Genome Database

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Gene: Ptprz1 (protein tyrosine phosphatase, receptor type Z, polypeptide 1) Mus musculus
Analyze
Symbol: Ptprz1
Name: protein tyrosine phosphatase, receptor type Z, polypeptide 1
RGD ID: 735761
MGI Page MGI
Description: Exhibits protein tyrosine phosphatase activity. Involved in several processes, including neurogenesis; peptidyl-tyrosine dephosphorylation; and regulation of myelination. Localizes to perineuronal net; plasma membrane; and synapse. Is expressed in forelimb; fronto-nasal process mesenchyme; genitourinary system; nervous system; and retina. Orthologous to human PTPRZ1 (protein tyrosine phosphatase receptor type Z1); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 3F8 chondroitin sulfate proteoglycan; 3H1 keratan sulfate proteoglycan; AI850339; DSD-1-; DSD-1-PG; pho; phosphacan; protein tyrosine phosphate, receptor type, Z; Pt; PTPb; PTPbeta; Ptprz; Ptpz; PTPzeta; R-PTP-zeta; receptor-type tyrosine-protein phosphatase zeta; RP; Rptp; Rptpbeta; RPTPz
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39622,875,302 - 23,052,915 (+)NCBIGRCm39mm39
GRCm39 Ensembl622,875,501 - 23,052,915 (+)Ensembl
GRCm38622,875,315 - 23,052,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl622,875,502 - 23,052,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv37622,825,502 - 23,002,916 (+)NCBIGRCm37mm9NCBIm37
MGSCv36622,825,503 - 23,002,917 (+)NCBImm8
Celera622,923,288 - 23,100,277 (+)NCBICelera
Cytogenetic Map6A3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-dichloroaniline  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetaldehyde  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
calcitriol  (ISO)
carbamazepine  (EXP,ISO)
carbon nanotube  (EXP)
chrysene  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dimethylarsinous acid  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
flutamide  (ISO)
furan  (ISO)
genistein  (EXP)
iron(III) nitrilotriacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
manganese(II) chloride  (ISO)
methyl beta-cyclodextrin  (ISO)
methylmercury chloride  (ISO)
miconazole  (EXP)
oxaliplatin  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
tacrolimus hydrate  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triclosan  (ISO)
Tungsten carbide  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Additional References at PubMed
PMID:1323835   PMID:8387522   PMID:8889548   PMID:9184108   PMID:9593903   PMID:9655611   PMID:9753681   PMID:10234020   PMID:10349636   PMID:10793198   PMID:10861539   PMID:10922068  
PMID:11003666   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12355066   PMID:12477932   PMID:12573468   PMID:12598897   PMID:12700241   PMID:14757526   PMID:15283989   PMID:15689543  
PMID:15708477   PMID:15870395   PMID:15890332   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16513268   PMID:16602821   PMID:16829211   PMID:16989954   PMID:17722031   PMID:17927663  
PMID:18178537   PMID:18287559   PMID:18308476   PMID:18474614   PMID:18647637   PMID:18713734   PMID:19141078   PMID:19373938   PMID:19428613   PMID:19641104   PMID:20133774   PMID:20689858  
PMID:20715155   PMID:21267068   PMID:21745462   PMID:21873635   PMID:21969550   PMID:22140262   PMID:22681904   PMID:22691363   PMID:22715095   PMID:22728091   PMID:22832403   PMID:22940073  
PMID:23060448   PMID:23084748   PMID:23144976   PMID:23624942   PMID:23744080   PMID:24029230   PMID:24154525   PMID:24952961   PMID:25250571   PMID:25369991   PMID:25737452   PMID:26338327  
PMID:26360410   PMID:27445335   PMID:27880917   PMID:28489004   PMID:28569747   PMID:28717188   PMID:28992190   PMID:29031500   PMID:29216327   PMID:29513653   PMID:29899142   PMID:30635555  
PMID:30667096   PMID:31194769   PMID:31202927   PMID:31277925   PMID:31416834   PMID:31430310   PMID:31822561   PMID:32238932   PMID:32325033  


Genomics

Comparative Map Data
Ptprz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39622,875,302 - 23,052,915 (+)NCBIGRCm39mm39
GRCm39 Ensembl622,875,501 - 23,052,915 (+)Ensembl
GRCm38622,875,315 - 23,052,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl622,875,502 - 23,052,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv37622,825,502 - 23,002,916 (+)NCBIGRCm37mm9NCBIm37
MGSCv36622,825,503 - 23,002,917 (+)NCBImm8
Celera622,923,288 - 23,100,277 (+)NCBICelera
Cytogenetic Map6A3.1NCBI
PTPRZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7121,873,089 - 122,062,036 (+)EnsemblGRCh38hg38GRCh38
GRCh387121,873,161 - 122,062,036 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377121,513,215 - 121,702,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367121,300,395 - 121,489,326 (+)NCBINCBI36hg18NCBI36
Build 347121,107,357 - 121,296,039NCBI
Celera7116,322,385 - 116,511,311 (+)NCBI
Cytogenetic Map7q31.32NCBI
HuRef7115,876,018 - 116,065,533 (+)NCBIHuRef
CHM1_17121,446,481 - 121,635,390 (+)NCBICHM1_1
CRA_TCAGchr7v27120,907,807 - 121,096,757 (+)NCBI
Ptprz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2451,397,316 - 51,595,220 (+)NCBI
Rnor_6.0 Ensembl449,941,304 - 50,140,762 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0449,941,046 - 50,140,764 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0449,730,302 - 49,927,328 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4449,267,521 - 49,468,692 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1449,498,094 - 49,699,266 (+)NCBI
Celera446,598,237 - 46,787,500 (+)NCBICelera
Cytogenetic Map4q22NCBI
Ptprz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554793,624,993 - 3,733,183 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554793,611,658 - 3,734,225 (+)NCBIChiLan1.0ChiLan1.0
PTPRZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17126,569,630 - 126,758,155 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7126,569,630 - 126,758,155 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07113,882,557 - 114,073,283 (+)NCBIMhudiblu_PPA_v0panPan3
PTPRZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11459,769,553 - 59,944,111 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1459,827,650 - 59,943,315 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1459,203,408 - 59,361,617 (+)NCBI
ROS_Cfam_1.01459,825,102 - 59,979,392 (+)NCBI
UMICH_Zoey_3.11459,916,795 - 60,071,051 (+)NCBI
UNSW_CanFamBas_1.01459,543,462 - 59,698,673 (+)NCBI
UU_Cfam_GSD_1.01459,919,950 - 60,076,006 (+)NCBI
Ptprz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511848,835,842 - 49,007,255 (+)NCBI
SpeTri2.0NW_0049366053,195,893 - 3,368,102 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1825,045,727 - 25,228,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11825,046,027 - 25,228,276 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21826,650,579 - 26,832,837 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRZ1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12190,686,091 - 90,877,538 (+)NCBI
ChlSab1.1 Ensembl2190,686,167 - 90,877,649 (+)Ensembl
Ptprz1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478313,911,525 - 14,105,403 (-)NCBI

Position Markers
AI850339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38623,003,568 - 23,003,681UniSTSGRCm38
MGSCv37622,953,568 - 22,953,681UniSTSGRCm37
Celera623,050,932 - 23,051,045UniSTS
Cytogenetic Map6A3.1UniSTS
Whitehead/MRC_RH6152.97UniSTS
Ptprz1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38623,051,977 - 23,052,167UniSTSGRCm38
MGSCv37623,001,977 - 23,002,167UniSTSGRCm37
Celera623,099,338 - 23,099,528UniSTS
Cytogenetic Map6A3.1UniSTS
cM Map6 UniSTS
PMC84149P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6A3.1UniSTS
Cytogenetic Map9FUniSTS
cM Map970.6UniSTS
PMC164283P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811109,011,652 - 109,011,747UniSTSGRCm38
MGSCv3711108,872,966 - 108,873,061UniSTSGRCm37
Celera11120,747,027 - 120,747,122UniSTS
Cytogenetic Map6A3.1UniSTS
UniSTS:225108  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811109,011,946 - 109,012,097UniSTSGRCm38
MGSCv3711108,873,260 - 108,873,411UniSTSGRCm37
Celera11120,747,321 - 120,747,472UniSTS
Cytogenetic Map6A3.1UniSTS
PMC343947P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811109,011,652 - 109,011,747UniSTSGRCm38
MGSCv3711108,872,966 - 108,873,061UniSTSGRCm37
Celera11120,747,027 - 120,747,122UniSTS
Cytogenetic Map6A3.1UniSTS
Ptprz1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38623,052,002 - 23,052,072UniSTSGRCm38
MGSCv37623,002,002 - 23,002,072UniSTSGRCm37
Celera623,099,363 - 23,099,433UniSTS
Cytogenetic Map6A3.1UniSTS
Ptprz1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38623,052,699 - 23,052,788UniSTSGRCm38
MGSCv37623,002,699 - 23,002,788UniSTSGRCm37
Celera623,100,060 - 23,100,149UniSTS
Cytogenetic Map6A3.1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144496Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144496Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144496Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633535476335Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920738249326Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751334Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345314181Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348726677Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348726677Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348726677Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707543297169Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797246118070Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122246751334Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122246751334Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61770000053500000Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61773466351734784Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1773466351734784Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61773466351734784Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61963941153639411Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61963941153639411Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61963941153639411Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62007289554072895Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:135
Interacting mature miRNAs:145
Transcripts:ENSMUST00000090568
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001311064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02055189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ133130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC157965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ174817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000090568   ⟹   ENSMUSP00000088056
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl622,875,502 - 23,052,916 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200769
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl623,048,272 - 23,051,503 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201827
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl622,986,309 - 22,999,397 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202102   ⟹   ENSMUSP00000143902
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl622,875,777 - 23,052,617 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202341
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl622,972,505 - 22,972,939 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202579   ⟹   ENSMUSP00000144605
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl622,875,722 - 23,004,678 (+)Ensembl
RefSeq Acc Id: NM_001081306   ⟹   NP_001074775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,501 - 23,052,915 (+)NCBI
GRCm38622,875,502 - 23,052,916 (+)NCBI
MGSCv37622,825,502 - 23,002,916 (+)RGD
Celera622,923,288 - 23,100,277 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001311064   ⟹   NP_001297993
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,501 - 23,052,915 (+)NCBI
GRCm38622,875,502 - 23,052,916 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361349   ⟹   NP_001348278
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,501 - 23,052,915 (+)NCBI
GRCm38622,875,502 - 23,052,916 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011219   ⟹   NP_035349
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,501 - 23,004,683 (+)NCBI
GRCm38622,875,502 - 23,004,684 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505012   ⟹   XP_006505075
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,302 - 23,052,915 (+)NCBI
GRCm38622,875,320 - 23,052,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505013   ⟹   XP_006505076
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,302 - 23,052,915 (+)NCBI
GRCm38622,875,315 - 23,052,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505014   ⟹   XP_006505077
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,302 - 23,052,915 (+)NCBI
GRCm38622,875,315 - 23,052,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505015   ⟹   XP_006505078
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,302 - 23,052,915 (+)NCBI
GRCm38622,875,315 - 23,052,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505017   ⟹   XP_006505080
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39622,875,302 - 23,052,915 (+)NCBI
GRCm38622,875,315 - 23,052,916 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001074775   ⟸   NM_001081306
- Peptide Label: isoform 3 precursor
- UniProtKB: B9EKR1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505078   ⟸   XM_006505015
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006505080   ⟸   XM_006505017
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006505075   ⟸   XM_006505012
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505076   ⟸   XM_006505013
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006505077   ⟸   XM_006505014
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001297993   ⟸   NM_001311064
- Peptide Label: isoform 4 precursor
- UniProtKB: B2RXS8 (UniProtKB/TrEMBL),   Q8C4M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001348278   ⟸   NM_001361349
- Peptide Label: isoform 5 precursor
RefSeq Acc Id: NP_035349   ⟸   NM_011219
- Peptide Label: isoform 1 precursor
RefSeq Acc Id: ENSMUSP00000088056   ⟸   ENSMUST00000090568
RefSeq Acc Id: ENSMUSP00000144605   ⟸   ENSMUST00000202579
RefSeq Acc Id: ENSMUSP00000143902   ⟸   ENSMUST00000202102
Promoters
RGD ID:6889092
Promoter ID:EPDNEW_M7997
Type:initiation region
Name:Ptprz1_1
Description:Mus musculus protein tyrosine phosphatase, receptor type Z, polypeptide1 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38622,875,531 - 22,875,591EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97816 AgrOrtholog
Ensembl Genes ENSMUSG00000068748 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000088056 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000143902 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144605 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000090568 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000202102 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000202579 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.10.200.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro alpha_CARP_receptor-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19283 UniProtKB/Swiss-Prot
MGD MGI:97816 ENTREZGENE
NCBI Gene 19283 ENTREZGENE
Pfam Carb_anhydrase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptprz1 PhenoGen
PRINTS PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51069 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YVD2_MOUSE UniProtKB/TrEMBL
  B2RXS8 ENTREZGENE, UniProtKB/TrEMBL
  B9EKR1 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3URX0_MOUSE UniProtKB/TrEMBL
  Q810U6_MOUSE UniProtKB/TrEMBL
  Q8BJY4_MOUSE UniProtKB/TrEMBL
  Q8C4M8 ENTREZGENE, UniProtKB/TrEMBL
  Q99LN6_MOUSE UniProtKB/TrEMBL
  Q9WUT8_MOUSE UniProtKB/TrEMBL