Gria1 (glutamate receptor, ionotropic, AMPA1 (alpha 1)) - Rat Genome Database

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Gene: Gria1 (glutamate receptor, ionotropic, AMPA1 (alpha 1)) Mus musculus
Analyze
Symbol: Gria1
Name: glutamate receptor, ionotropic, AMPA1 (alpha 1)
RGD ID: 735685
MGI Page MGI
Description: Enables AMPA glutamate receptor activity; neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration; and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Involved in several processes, including long-term memory; receptor internalization; and synapse assembly. Acts upstream of or within cellular response to ammonium ion; chemical synaptic transmission; and long-term synaptic depression. Located in several cellular components, including neuron spine; perisynaptic space; and postsynaptic density membrane. Part of AMPA glutamate receptor complex. Is active in dendritic spine membrane and excitatory synapse. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and sensory organ. Used to study schizoaffective disorder. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder and autosomal recessive intellectual developmental disorder 76. Orthologous to human GRIA1 (glutamate ionotropic receptor AMPA type subunit 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900051M01Rik; AI853806; AMPA-selective glutamate receptor 1; Gl; Glr; Glr-1; Glr1; Glu; GluA1; Glur; Glur-1; GluR-A; gluR-K1; Glur1; GluRA; glutamate receptor 1; glutamate receptor A; glutamate receptor ionotropic, AMPA 1; HI; HIPA1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,902,342 - 57,221,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1156,902,213 - 57,221,070 (+)EnsemblGRCm39 Ensembl
GRCm381157,011,571 - 57,330,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,011,387 - 57,330,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371156,825,193 - 57,143,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361156,855,379 - 57,146,439 (+)NCBIMGSCv36mm8
Celera1161,935,002 - 62,079,468 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1134.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(S)-AMPA  (ISO)
1-(4-methoxybenzyl)-3-(5-nitro-1,3-thiazol-2-yl)urea  (ISO)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
1-bromopropane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,3-Dioxo-6-nitro-7-sulfamoylbenzo(f)quinoxaline  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-methyl-6-(phenylethynyl)pyridine  (ISO)
2-tert-butylhydroquinone  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-[1-hydroxy-2-[4-(phenylmethyl)-1-piperidinyl]propyl]phenol  (ISO)
6-Cyano-7-nitroquinoxaline-2,3-dione  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsane  (EXP)
arsenic acid  (ISO)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
atrazine  (ISO)
azoxystrobin  (ISO)
Bay-K-8644  (EXP)
benzo[a]pyrene  (ISO)
benzoates  (ISO)
beta-naphthoflavone  (ISO)
bicuculline  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
capsaicin  (ISO)
carbon nanotube  (EXP)
celecoxib  (EXP)
CGP 52608  (ISO)
chaetocin  (ISO)
chlorpyrifos  (ISO)
citalopram  (ISO)
Citreoviridin  (EXP)
cocaine  (EXP,ISO)
corticosterone  (EXP)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cypermethrin  (EXP)
decabromodiphenyl ether  (ISO)
Diacetoxyscirpenol  (EXP)
diarsenic trioxide  (EXP)
diazinon  (ISO)
dichloroacetic acid  (EXP)
dieldrin  (ISO)
dizocilpine maleate  (ISO)
domoic acid  (ISO)
dopamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (EXP,ISO)
excitatory amino acid agonist  (ISO)
flavonoids  (ISO)
fluoxetine  (EXP,ISO)
genistein  (EXP,ISO)
glycine  (ISO)
glyphosate  (ISO)
haloperidol  (ISO)
imidacloprid  (ISO)
istradefylline  (ISO)
kainic acid  (EXP,ISO)
ketamine  (EXP)
KN-93  (ISO)
L-ascorbic acid  (EXP)
lactacystin  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
maleic acid  (ISO)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (EXP)
mifepristone  (ISO)
minocycline  (ISO)
morphine  (EXP,ISO)
N,N-diethyl-m-toluamide  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nifedipine  (EXP)
nitrofen  (ISO)
ochratoxin A  (ISO)
Ondansetron  (ISO)
ozone  (EXP)
paclitaxel  (ISO)
panobinostat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (ISO)
pirinixic acid  (EXP)
poly(cytidylic acid)  (ISO)
progesterone  (ISO)
quinpirole  (EXP)
resveratrol  (EXP)
rifampicin  (ISO)
rimonabant  (EXP,ISO)
SB 431542  (ISO)
sevoflurane  (EXP)
SL-327  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sterigmatocystin  (ISO)
sulfur dioxide  (ISO)
tadalafil  (EXP)
tetrachloromethane  (ISO)
tetrodotoxin  (ISO)
thiabendazole  (ISO)
thioacetamide  (EXP)
titanium dioxide  (EXP)
triazolam  (EXP)
tributylstannane  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
venlafaxine hydrochloride  (ISO)
vorinostat  (ISO)
WIN 55212-2  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
behavioral response to pain  (ISO)
cellular response to amine stimulus  (ISO)
cellular response to amino acid stimulus  (ISO)
cellular response to ammonium ion  (IDA)
cellular response to brain-derived neurotrophic factor stimulus  (ISO)
cellular response to dsRNA  (ISO)
cellular response to growth factor stimulus  (ISO)
cellular response to organic cyclic compound  (ISO)
cellular response to peptide hormone stimulus  (ISO)
cerebral cortex development  (ISO)
chemical synaptic transmission  (IGI)
long-term memory  (IMP,ISO)
long-term synaptic depression  (IGI)
long-term synaptic potentiation  (ISO)
modulation of chemical synaptic transmission  (IBA,ISO)
monoatomic ion transmembrane transport  (IEA)
monoatomic ion transport  (IEA)
neuronal action potential  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of membrane potential  (ISO)
positive regulation of synaptic transmission  (ISO)
receptor internalization  (IMP,ISO)
regulation of postsynaptic membrane potential  (IMP)
regulation of receptor recycling  (ISO)
regulation of synaptic plasticity  (ISO)
response to arsenic-containing substance  (ISO)
response to cocaine  (ISO)
response to electrical stimulus  (ISO)
response to estradiol  (ISO)
response to fungicide  (ISO)
response to lithium ion  (ISO)
response to morphine  (ISO)
response to organic cyclic compound  (ISO)
response to peptide hormone  (ISO)
response to toxic substance  (ISO)
response to xenobiotic stimulus  (ISO)
spinal cord development  (ISO)
synapse assembly  (IMP)
synaptic transmission, glutamatergic  (IBA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal associative learning  (IAGP)
abnormal behavioral response to xenobiotic  (IAGP)
abnormal dendrite morphology  (IAGP)
abnormal emotion/affect behavior  (IAGP)
abnormal excitatory postsynaptic potential  (IAGP)
abnormal freezing behavior  (IEA)
abnormal gait  (IEA)
abnormal glutamate-mediated receptor currents  (IAGP)
abnormal locomotor behavior  (IAGP)
abnormal long-term potentiation  (IAGP)
abnormal long-term spatial reference memory  (IAGP)
abnormal miniature excitatory postsynaptic currents  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal nociception after inflammation  (IAGP)
abnormal response to new environment  (IAGP)
abnormal serotonin level  (IAGP)
abnormal sexual interaction  (IAGP)
abnormal social investigation  (IAGP)
abnormal spatial working memory  (IAGP)
abnormal spinal cord morphology  (IAGP)
absent long-term depression  (IAGP)
decreased aggression towards male mice  (IAGP)
decreased anxiety-related response  (IAGP)
decreased behavioral withdrawal response  (IAGP)
decreased body size  (IAGP)
decreased bone mineral content  (IEA)
decreased chemical nociceptive threshold  (IAGP)
decreased exploration in new environment  (IEA)
decreased freezing behavior  (IEA)
decreased glycosylated hemoglobin level  (IEA)
decreased prepulse inhibition  (IEA)
decreased startle reflex  (IEA)
decreased vertical activity  (IEA)
enhanced conditioned place preference behavior  (IAGP)
hyperactivity  (IAGP)
hypoalgesia  (IEA)
impaired ability to fire action potentials  (IAGP)
impaired contextual conditioning behavior  (IEA)
impaired cued conditioning behavior  (IEA)
impaired synaptic plasticity  (IAGP)
increased anxiety-related response  (IAGP)
increased blood urea nitrogen level  (IEA)
increased circulating alkaline phosphatase level  (IEA)
increased circulating amylase level  (IEA)
increased circulating iron level  (IEA)
increased circulating serum albumin level  (IEA)
increased exploration in new environment  (IAGP)
increased locomotor activity  (IEA)
increased mechanical nociceptive threshold  (IEA)
increased vertical activity  (IAGP)
induced hyperactivity  (IAGP)
no abnormal phenotype detected  (IAGP)
reduced AMPA-mediated synaptic currents  (IAGP)
reduced long-term potentiation  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Modification of ionotropic glutamate receptor-mediated processes in the rat hippocampus following repeated, brief seizures. Borbely S, etal., Neuroscience. 2009 Mar 3;159(1):358-68. Epub 2008 Dec 27.
2. Early-onset epilepsy and postnatal lethality associated with an editing-deficient GluR-B allele in mice. Brusa R, etal., Science 1995 Dec 8;270(5242):1677-80.
3. Cocaine-seeking behaviour is differentially expressed in male and female mice exposed to maternal separation and is associated with alterations in AMPA receptors subunits in the medial prefrontal cortex. Castro-Zavala A, etal., Prog Neuropsychopharmacol Biol Psychiatry. 2021 Jul 13;109:110262. doi: 10.1016/j.pnpbp.2021.110262. Epub 2021 Jan 23.
4. Phosphorylation of GluR1, ERK, and CREB during spontaneous withdrawal from chronic heroin self-administration. Edwards S, etal., Synapse. 2009 Mar;63(3):224-35. doi: 10.1002/syn.20601.
5. Viral-like brain inflammation during development causes increased seizure susceptibility in adult rats. Galic MA, etal., Neurobiol Dis. 2009 Nov;36(2):343-51. Epub 2009 Aug 4.
6. Persistent pain maintains morphine-seeking behavior after morphine withdrawal through reduced MeCP2 repression of GluA1 in rat central amygdala. Hou YY, etal., J Neurosci. 2015 Feb 25;35(8):3689-700. doi: 10.1523/JNEUROSCI.3453-14.2015.
7. CaMKII-dependent dendrite ramification and spine generation promote spatial training-induced memory improvement in a rat model of sporadic Alzheimer's disease. Jiang X, etal., Neurobiol Aging. 2015 Feb;36(2):867-76. doi: 10.1016/j.neurobiolaging.2014.10.018. Epub 2014 Oct 16.
8. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
9. The role of reelin in adult synaptic function and the genetic and epigenetic regulation of the reelin gene. Levenson JM, etal., Biochim Biophys Acta. 2008 Aug;1779(8):422-31. Epub 2008 Jan 12.
10. Mechanisms of CaMKII action in long-term potentiation. Lisman J, etal., Nat Rev Neurosci. 2012 Feb 15;13(3):169-82. doi: 10.1038/nrn3192.
11. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
12. MGDs mouse GO annotations MGD data from the GO Consortium
13. MGD IEA MGD IEA
14. Transport of AMPA receptors during long-term potentiation is impaired in rats with hepatic encephalopathy. Monfort P, etal., Neurochem Int. 2009 Dec;55(7):514-20. Epub 2009 May 18.
15. AMPA receptor down-regulation induced by ischaemia/reperfusion is attenuated by age and blocked by meloxicam. Montori S, etal., Neuropathol Appl Neurobiol. 2010 Apr 8.
16. Physical exercise improves learning by modulating hippocampal mossy fiber sprouting and related gene expression in a developmental rat model of penicillin-induced recurrent epilepticus. Ni H, etal., Toxicol Lett. 2009 Dec 1;191(1):26-32. Epub 2009 Aug 8.
17. Cortical neurons from intrauterine growth retardation rats exhibit lower response to neurotrophin BDNF. Ninomiya M, etal., Neurosci Lett. 2010 May 31;476(2):104-9. Epub 2010 Apr 14.
18. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
19. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
20. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
21. Mouse MP Annotation Import Pipeline RGD automated import pipeline
22. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
24. Myo-inositol treatment prevents biochemical changes triggered by kainate-induced status epilepticus. Solomonia R, etal., Neurosci Lett. 2010 Jan 14;468(3):277-81. Epub 2009 Nov 13.
Additional References at PubMed
PMID:1310861   PMID:1319477   PMID:1699805   PMID:7504359   PMID:7626895   PMID:8230318   PMID:8406478   PMID:8421494   PMID:8464923   PMID:8889548   PMID:9016303   PMID:9051806  
PMID:9070927   PMID:9221927   PMID:9482932   PMID:9619499   PMID:9651535   PMID:9882498   PMID:10325223   PMID:10331083   PMID:10349636   PMID:10364547   PMID:10407040   PMID:10581402  
PMID:10688364   PMID:10767319   PMID:10846166   PMID:11042159   PMID:11076861   PMID:11161476   PMID:11172053   PMID:11404432   PMID:11431570   PMID:11516402   PMID:11751897   PMID:11754364  
PMID:12032353   PMID:12183685   PMID:12195431   PMID:12204345   PMID:12414093   PMID:12477932   PMID:12500308   PMID:12574434   PMID:12588844   PMID:12628184   PMID:12692557   PMID:12700243  
PMID:12736365   PMID:12802202   PMID:12839988   PMID:12871650   PMID:12878757   PMID:12897243   PMID:12897788   PMID:14555717   PMID:14561864   PMID:14572467   PMID:14573529   PMID:14681479  
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PMID:15723058   PMID:15745962   PMID:15774536   PMID:15869941   PMID:15883194   PMID:15932595   PMID:15937080   PMID:16000628   PMID:16007085   PMID:16051435   PMID:16104378   PMID:16120638  
PMID:16129400   PMID:16141072   PMID:16141073   PMID:16242627   PMID:16266699   PMID:16336634   PMID:16421200   PMID:16436600   PMID:16511345   PMID:16580093   PMID:16600857   PMID:16601687  
PMID:16602821   PMID:16606358   PMID:16635246   PMID:16707115   PMID:16707791   PMID:16814779   PMID:16837587   PMID:16880397   PMID:16957075   PMID:16987237   PMID:17018287   PMID:17093100  
PMID:17207779   PMID:17229826   PMID:17296559   PMID:17482902   PMID:17507556   PMID:17592947   PMID:17684498   PMID:17689977   PMID:17828255   PMID:17880895   PMID:17898222   PMID:17923095  
PMID:17928436   PMID:17953485   PMID:17972919   PMID:17976577   PMID:18045915   PMID:18085873   PMID:18088278   PMID:18184638   PMID:18198214   PMID:18199763   PMID:18250082   PMID:18279310  
PMID:18283118   PMID:18292343   PMID:18297067   PMID:18341993   PMID:18353676   PMID:18367087   PMID:18394473   PMID:18455244   PMID:18458101   PMID:18565157   PMID:18598267   PMID:18667617  
PMID:18701074   PMID:18760699   PMID:18776896   PMID:18815255   PMID:18829953   PMID:18840692   PMID:18842882   PMID:18922769   PMID:18958186   PMID:19004011   PMID:19022416   PMID:19070590  
PMID:19109486   PMID:19141300   PMID:19208628   PMID:19217926   PMID:19240035   PMID:19244531   PMID:19302150   PMID:19403825   PMID:19409270   PMID:19470654   PMID:19503082   PMID:19543281  
PMID:19549880   PMID:19657020   PMID:19664265   PMID:19746427   PMID:19805317   PMID:19858198   PMID:19892736   PMID:19906877   PMID:19925206   PMID:20092574   PMID:20132465   PMID:20152115  
PMID:20185686   PMID:20350557   PMID:20418887   PMID:20457613   PMID:20497907   PMID:20553819   PMID:20572199   PMID:20659172   PMID:20699120   PMID:20805473   PMID:20824214   PMID:20861386  
PMID:20980546   PMID:21030604   PMID:21062905   PMID:21073553   PMID:21125585   PMID:21135237   PMID:21144999   PMID:21159965   PMID:21172611   PMID:21187407   PMID:21192082   PMID:21209835  
PMID:21267068   PMID:21307330   PMID:21325433   PMID:21368048   PMID:21378100   PMID:21383497   PMID:21483826   PMID:21516102   PMID:21536866   PMID:21558424   PMID:21641937   PMID:21693126  
PMID:21795692   PMID:21810476   PMID:21873635   PMID:21883219   PMID:21927928   PMID:21966449   PMID:22197030   PMID:22241839   PMID:22347480   PMID:22375105   PMID:22396411   PMID:22419037  
PMID:22623657   PMID:22632720   PMID:22710612   PMID:22722203   PMID:22723691   PMID:22745495   PMID:22767895   PMID:22770842   PMID:23119095   PMID:23129617   PMID:23217150   PMID:23223299  
PMID:23235828   PMID:23238719   PMID:23262314   PMID:23277581   PMID:23303939   PMID:23395379   PMID:23431133   PMID:23502536   PMID:23522044   PMID:23525449   PMID:23664612   PMID:23676497  
PMID:23694735   PMID:23739967   PMID:23760271   PMID:23766509   PMID:23864664   PMID:23867766   PMID:23911420   PMID:23929622   PMID:23936366   PMID:23969560   PMID:24048851   PMID:24090223  
PMID:24122442   PMID:24174661   PMID:24259587   PMID:24339333   PMID:24412196   PMID:24613359   PMID:24706758   PMID:24790185   PMID:24790195   PMID:24895223   PMID:24932798   PMID:24952961  
PMID:24983627   PMID:25080587   PMID:25218043   PMID:25224260   PMID:25232112   PMID:25274827   PMID:25297100   PMID:25337787   PMID:25359681   PMID:25381005   PMID:25429150   PMID:25446922  
PMID:25500815   PMID:25545823   PMID:25547714   PMID:25614360   PMID:25643299   PMID:25708312   PMID:25800971   PMID:25918374   PMID:25964356   PMID:25968143   PMID:25979088   PMID:26049209  
PMID:26051932   PMID:26115702   PMID:26247621   PMID:26250624   PMID:26263173   PMID:26443267   PMID:26443861   PMID:26521016   PMID:26522741   PMID:26585043   PMID:26609150   PMID:26724583  
PMID:26880306   PMID:26932439   PMID:26980779   PMID:27076426   PMID:27170659   PMID:27178193   PMID:27189808   PMID:27417577   PMID:27480238   PMID:27482106   PMID:27507650   PMID:27708157  
PMID:27800545   PMID:27965425   PMID:28069946   PMID:28103481   PMID:28194005   PMID:28212375   PMID:28290985   PMID:28336441   PMID:28355182   PMID:28384478   PMID:28585190   PMID:28630296  
PMID:28642476   PMID:28671696   PMID:28706196   PMID:28725178   PMID:28762944   PMID:28765333   PMID:28768764   PMID:28780133   PMID:28785046   PMID:28821923   PMID:28864826   PMID:29056294  
PMID:29107521   PMID:29180434   PMID:29222408   PMID:29230056   PMID:29276473   PMID:29337309   PMID:29488136   PMID:29490264   PMID:29509512   PMID:29581259   PMID:29651133   PMID:29706584  
PMID:29754475   PMID:29915039   PMID:29988555   PMID:30057205   PMID:30092607   PMID:30104731   PMID:30108203   PMID:30146304   PMID:30154490   PMID:30190524   PMID:30323233   PMID:30355633  
PMID:30429451   PMID:30457201   PMID:30466882   PMID:30536651   PMID:30692166   PMID:30713523   PMID:30931998   PMID:30981860   PMID:30984001   PMID:30992372   PMID:31000699   PMID:31053408  
PMID:31121204   PMID:31231192   PMID:31492534   PMID:31577955   PMID:31597102   PMID:31599924   PMID:31600191   PMID:31629407   PMID:31651360   PMID:31682817   PMID:31721013   PMID:31841517  
PMID:31852900   PMID:31901303   PMID:31969470   PMID:31992779   PMID:32027825   PMID:32161758   PMID:32185508   PMID:32229518   PMID:32325033   PMID:32581705   PMID:32831170   PMID:32891704  
PMID:32894462   PMID:32931550   PMID:33058902   PMID:33154347   PMID:33395376   PMID:33627404   PMID:33981040   PMID:34001888   PMID:34065662   PMID:34077732   PMID:34079129   PMID:34321999  
PMID:34419429   PMID:34426577   PMID:34455539   PMID:34658338   PMID:34720876   PMID:34782594   PMID:34924114   PMID:35288531   PMID:35722188   PMID:35746896   PMID:35750109   PMID:35853724  
PMID:36070750   PMID:36179027   PMID:36223737   PMID:36265023   PMID:36417873   PMID:36429079   PMID:36604605   PMID:36813576   PMID:37686246   PMID:37876813  


Genomics

Comparative Map Data
Gria1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,902,342 - 57,221,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1156,902,213 - 57,221,070 (+)EnsemblGRCm39 Ensembl
GRCm381157,011,571 - 57,330,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,011,387 - 57,330,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371156,825,193 - 57,143,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361156,855,379 - 57,146,439 (+)NCBIMGSCv36mm8
Celera1161,935,002 - 62,079,468 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1134.51NCBI
GRIA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385153,489,615 - 153,813,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5153,489,615 - 153,813,869 (+)EnsemblGRCh38hg38GRCh38
GRCh375152,870,230 - 153,193,429 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365152,850,499 - 153,171,354 (+)NCBINCBI36Build 36hg18NCBI36
Build 345152,850,498 - 153,171,354NCBI
Celera5148,945,616 - 149,268,929 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5148,010,721 - 148,334,111 (+)NCBIHuRef
CHM1_15152,302,506 - 152,626,274 (+)NCBICHM1_1
T2T-CHM13v2.05154,022,776 - 154,347,051 (+)NCBIT2T-CHM13v2.0
Gria1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81041,710,540 - 42,030,105 (+)NCBIGRCr8
mRatBN7.21041,210,713 - 41,527,283 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1041,210,713 - 41,527,283 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1045,861,160 - 46,177,214 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01045,351,373 - 45,667,433 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01040,855,030 - 41,171,065 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01042,441,723 - 42,760,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1042,614,713 - 42,760,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01042,257,736 - 42,571,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41042,613,359 - 42,616,610 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1040,506,762 - 40,822,664 (+)NCBICelera
Cytogenetic Map10q22NCBI
Gria1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554087,912,592 - 8,223,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554087,912,223 - 8,226,241 (+)NCBIChiLan1.0ChiLan1.0
GRIA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24148,684,899 - 149,011,988 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15146,824,470 - 147,151,533 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05148,879,996 - 149,206,914 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15154,877,807 - 155,204,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5154,879,080 - 155,204,660 (+)Ensemblpanpan1.1panPan2
GRIA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,801,269 - 56,103,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,803,296 - 56,103,669 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,639,927 - 55,995,772 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0456,183,572 - 56,538,983 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl456,237,177 - 56,538,754 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1456,012,350 - 56,367,654 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0456,111,546 - 56,466,793 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,613,928 - 56,969,631 (-)NCBIUU_Cfam_GSD_1.0
Gria1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213110,488,036 - 110,787,054 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,940,009 - 9,083,151 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,937,391 - 9,236,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1669,332,587 - 69,655,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11669,332,786 - 69,654,366 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21675,191,970 - 75,275,696 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12355,944,128 - 56,265,748 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2356,101,294 - 56,265,849 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603421,402,866 - 21,730,046 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gria1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473335,339,683 - 35,647,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473335,337,039 - 35,648,184 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gria1
12469 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4185
Count of miRNA genes:772
Interacting mature miRNAs:1031
Transcripts:ENSMUST00000036315, ENSMUST00000094179, ENSMUST00000125292, ENSMUST00000151045, ENSMUST00000173531
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse

Markers in Region
07.MMHAP97FRC7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,044,563 - 57,044,731UniSTSGRCm38
MGSCv371156,858,065 - 56,858,233UniSTSGRCm37
Celera1161,792,000 - 61,792,168UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead_YAC11 UniSTS
24.MMHAP48FLH3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,274,436 - 57,274,587UniSTSGRCm38
MGSCv371157,087,938 - 57,088,089UniSTSGRCm37
Celera1162,023,237 - 62,023,388UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead_YAC11 UniSTS
X57497  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,327,646 - 57,327,761UniSTSGRCm38
MGSCv371157,141,148 - 57,141,263UniSTSGRCm37
Celera1162,076,851 - 62,076,966UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11751.57UniSTS
AI853806  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,329,733 - 57,329,824UniSTSGRCm38
MGSCv371157,143,235 - 57,143,326UniSTSGRCm37
Celera1162,078,957 - 62,079,048UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11751.57UniSTS
BF416798  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,044,194 - 57,044,291UniSTSGRCm38
MGSCv371156,857,696 - 56,857,793UniSTSGRCm37
Celera1161,791,631 - 61,791,728UniSTS
Cytogenetic Map11B1.3UniSTS
Gria1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371157,141,109 - 57,141,259UniSTSGRCm37
Celera1162,076,812 - 62,076,962UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1131.0UniSTS
AU049595  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,063,484 - 57,063,658UniSTSGRCm38
MGSCv371156,876,986 - 56,877,160UniSTSGRCm37
Celera1161,810,968 - 61,811,142UniSTS
Cytogenetic Map11B1.3UniSTS
Gria1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,327,607 - 57,327,757UniSTSGRCm38
MGSCv371157,141,109 - 57,141,259UniSTSGRCm37
Celera1162,076,812 - 62,076,962UniSTS
Cytogenetic Map11B1.3UniSTS
cM Map1131.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB102773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB102774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB104707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02158913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF201342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL954821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX248119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ155313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN180918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN180919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN180920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X57497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000036315   ⟹   ENSMUSP00000044494
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1156,902,636 - 57,221,070 (+)Ensembl
GRCm38.p6 Ensembl1157,011,810 - 57,330,244 (+)Ensembl
RefSeq Acc Id: ENSMUST00000094179   ⟹   ENSMUSP00000091731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1156,902,782 - 57,221,069 (+)Ensembl
GRCm38.p6 Ensembl1157,011,956 - 57,330,243 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125292   ⟹   ENSMUSP00000133439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1156,902,213 - 56,906,117 (+)Ensembl
GRCm38.p6 Ensembl1157,011,387 - 57,015,291 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151045   ⟹   ENSMUSP00000117746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1156,903,872 - 57,221,066 (+)Ensembl
GRCm38.p6 Ensembl1157,013,046 - 57,330,240 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1157,067,344 - 57,080,619 (+)Ensembl
GRCm38.p6 Ensembl1157,176,518 - 57,189,793 (+)Ensembl
RefSeq Acc Id: NM_001113325   ⟹   NP_001106796
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,902,444 - 57,221,070 (+)NCBI
GRCm381157,011,618 - 57,330,244 (+)NCBI
MGSCv371156,825,193 - 57,143,746 (+)RGD
Celera1161,920,198 - 62,079,468 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252403   ⟹   NP_001239332
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,903,872 - 57,221,070 (+)NCBI
GRCm381157,013,046 - 57,330,244 (+)NCBI
Celera1161,920,198 - 62,079,468 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_008165   ⟹   NP_032191
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,902,444 - 57,221,070 (+)NCBI
GRCm381157,011,618 - 57,330,244 (+)NCBI
MGSCv371156,825,193 - 57,143,746 (+)RGD
Celera1161,920,198 - 62,079,468 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532234   ⟹   XP_006532297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,903,583 - 57,221,068 (+)NCBI
GRCm381157,012,682 - 57,330,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314275   ⟹   XP_017169764
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,903,578 - 57,221,068 (+)NCBI
GRCm381157,012,680 - 57,330,242 (+)NCBI
Sequence:
RefSeq Acc Id: XR_388348
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391156,902,342 - 57,221,068 (+)NCBI
GRCm381157,011,571 - 57,330,242 (+)NCBI
Sequence:
RefSeq Acc Id: NP_032191   ⟸   NM_008165
- Peptide Label: isoform 2 precursor
- UniProtKB: Q7TNB5 (UniProtKB/TrEMBL),   Q6P9M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106796   ⟸   NM_001113325
- Peptide Label: isoform 1 precursor
- UniProtKB: P23818 (UniProtKB/Swiss-Prot),   C9K0Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239332   ⟸   NM_001252403
- Peptide Label: isoform 3
- UniProtKB: F6YNQ1 (UniProtKB/TrEMBL),   C9K0Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532297   ⟸   XM_006532234
- Peptide Label: isoform X1
- UniProtKB: F6YNQ1 (UniProtKB/TrEMBL),   C9K0Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169764   ⟸   XM_017314275
- Peptide Label: isoform X2
- UniProtKB: Q6P9M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000133439   ⟸   ENSMUST00000125292
RefSeq Acc Id: ENSMUSP00000117746   ⟸   ENSMUST00000151045
RefSeq Acc Id: ENSMUSP00000044494   ⟸   ENSMUST00000036315
RefSeq Acc Id: ENSMUSP00000091731   ⟸   ENSMUST00000094179
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P23818-F1-model_v2 AlphaFold P23818 1-907 view protein structure

Promoters
RGD ID:8674716
Promoter ID:EPDNEW_M15389
Type:multiple initiation site
Name:Gria1_2
Description:Mus musculus glutamate receptor, ionotropic, AMPA1 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15390  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381157,011,569 - 57,011,629EPDNEW
RGD ID:8674718
Promoter ID:EPDNEW_M15390
Type:initiation region
Name:Gria1_1
Description:Mus musculus glutamate receptor, ionotropic, AMPA1 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15389  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381157,011,806 - 57,011,866EPDNEW
RGD ID:6821025
Promoter ID:MM_KWN:7504
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000012688,   OTTMUST00000012689
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361157,014,336 - 57,014,836 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95808 AgrOrtholog
Ensembl Genes ENSMUSG00000020524 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000036315 ENTREZGENE
  ENSMUST00000036315.16 UniProtKB/Swiss-Prot
  ENSMUST00000094179 ENTREZGENE
  ENSMUST00000094179.11 UniProtKB/TrEMBL
  ENSMUST00000151045 ENTREZGENE
  ENSMUST00000151045.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Solute-binding_3/MltF_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95808 ENTREZGENE
NCBI Gene 14799 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SBP_bac_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gria1 PhenoGen
PRINTS NMDARECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PBPe UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C9K0Y3 ENTREZGENE, UniProtKB/TrEMBL
  C9K0Y4_MOUSE UniProtKB/TrEMBL
  C9K0Y8_MOUSE UniProtKB/TrEMBL
  F6YNQ1 ENTREZGENE, UniProtKB/TrEMBL
  G5CJW6_MOUSE UniProtKB/TrEMBL
  G5CJW7_MOUSE UniProtKB/TrEMBL
  G5CJW8_MOUSE UniProtKB/TrEMBL
  GRIA1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q6P9M2 ENTREZGENE, UniProtKB/TrEMBL
  Q7TNB5 ENTREZGENE, UniProtKB/TrEMBL
  Q9CUV0_MOUSE UniProtKB/TrEMBL