Bcat1 (branched chain aminotransferase 1, cytosolic) - Rat Genome Database
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Gene: Bcat1 (branched chain aminotransferase 1, cytosolic) Mus musculus
Analyze
Symbol: Bcat1
Name: branched chain aminotransferase 1, cytosolic
RGD ID: 735669
MGI Page MGI
Description: Exhibits branched-chain-amino-acid transaminase activity. Involved in branched-chain amino acid catabolic process. Localizes to cytosol. Is expressed in several structures, including craniocervical region bone; limb; nervous system; sensory organ; and tooth. Orthologous to human BCAT1 (branched chain amino acid transaminase 1); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BCAT; BCAT(c); Bcat-; BCATc; branched-chain-amino-acid aminotransferase, cytosolic; Eca3; Eca39
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396144,939,561 - 145,021,883 (-)NCBIGRCm39mm39
GRCm386144,993,835 - 145,076,157 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6144,993,835 - 145,076,184 (-)EnsemblGRCm38mm10GRCm38
MGSCv376144,942,355 - 145,024,677 (-)NCBIGRCm37mm9NCBIm37
MGSCv366144,956,312 - 145,033,242 (-)NCBImm8
Celera6148,047,506 - 148,145,066 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
allyl alcohol  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bucladesine  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcidiol  (ISO)
carbamazepine  (ISO)
carbofuran  (ISO)
carbon nanotube  (EXP)
chloroacetaldehyde  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDT  (ISO)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
diethyl phthalate  (ISO)
diethylstilbestrol  (EXP)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (ISO)
genistein  (EXP)
heptachlor  (ISO)
ifosfamide  (ISO)
isoprenaline  (ISO)
lead diacetate  (EXP,ISO)
medroxyprogesterone acetate  (ISO)
metacetamol  (EXP)
metaproterenol  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
mirex  (ISO)
mitoxantrone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
neomycin  (EXP)
nickel atom  (ISO)
orciprenaline  (ISO)
paracetamol  (EXP,ISO)
pentane-2,3-dione  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylbutazone  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
scopolamine  (ISO)
silicon dioxide  (ISO)
Soman  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP,ISO)
triamterene  (ISO)
tributylstannane  (ISO)
Tributyltin oxide  (EXP)
trimellitic anhydride  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IDA)
mitochondrion  (HDA,IBA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:1340466   PMID:2251142   PMID:8692959   PMID:8889548   PMID:9657861   PMID:10349636   PMID:10512203   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11360186  
PMID:12477932   PMID:12520002   PMID:12545163   PMID:12819125   PMID:12904583   PMID:14563018   PMID:14610273   PMID:14681479   PMID:15064703   PMID:15489334   PMID:15735755   PMID:15840001  
PMID:16141072   PMID:16141073   PMID:16783635   PMID:16828066   PMID:16862160   PMID:16919269   PMID:17150414   PMID:17767905   PMID:17967808   PMID:18614015   PMID:18799693   PMID:19521500  
PMID:20736162   PMID:21267068   PMID:21873635   PMID:24154525   PMID:24349566   PMID:24847056   PMID:24952961   PMID:26351290   PMID:26902285   PMID:28219950   PMID:28699638   PMID:29459677  
PMID:30318512   PMID:32325033   PMID:32553114  


Genomics

Comparative Map Data
Bcat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396144,939,561 - 145,021,883 (-)NCBIGRCm39mm39
GRCm386144,993,835 - 145,076,157 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6144,993,835 - 145,076,184 (-)EnsemblGRCm38mm10GRCm38
MGSCv376144,942,355 - 145,024,677 (-)NCBIGRCm37mm9NCBIm37
MGSCv366144,956,312 - 145,033,242 (-)NCBImm8
Celera6148,047,506 - 148,145,066 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.27NCBI
BCAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1224,810,024 - 24,949,101 (-)EnsemblGRCh38hg38GRCh38
GRCh381224,810,024 - 24,949,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371224,962,958 - 25,102,393 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,855,545 - 24,993,499 (-)NCBINCBI36hg18NCBI36
Build 341224,855,561 - 24,993,499NCBI
Celera1230,109,823 - 30,249,287 (-)NCBI
Cytogenetic Map12p12.1NCBI
HuRef1224,732,841 - 24,872,358 (-)NCBIHuRef
CHM1_11224,928,106 - 25,067,454 (-)NCBICHM1_1
Bcat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04179,259,305 - 179,340,021 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,259,308 - 179,339,795 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04243,444,839 - 243,460,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04243,463,299 - 243,491,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44182,641,517 - 182,692,917 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14182,886,640 - 182,938,041 (-)NCBI
Celera4166,483,269 - 166,533,125 (-)NCBICelera
Cytogenetic Map4q44NCBI
Bcat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541319,981,328 - 20,087,638 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541319,975,395 - 20,087,656 (-)NCBIChiLan1.0ChiLan1.0
BCAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11263,978,116 - 64,114,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1263,978,116 - 64,107,463 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01261,364,154 - 61,500,827 (+)NCBIMhudiblu_PPA_v0panPan3
BCAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2722,535,254 - 22,636,959 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12722,536,297 - 22,643,350 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Bcat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365482,385,756 - 2,454,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl548,814,300 - 48,925,976 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1548,814,212 - 48,925,632 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2552,534,770 - 52,624,453 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCAT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1124,579,487 - 24,709,132 (-)Ensembl
ChlSab1.11124,578,760 - 24,709,541 (-)NCBI
Bcat1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475214,074,701 - 14,166,075 (+)NCBI

Position Markers
UniSTS:235574  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386145,004,204 - 145,004,416UniSTSGRCm38
MGSCv376144,952,724 - 144,952,936UniSTSGRCm37
Celera6148,059,303 - 148,059,515UniSTS
Cytogenetic Map6G3UniSTS
cM Map673.9UniSTS
G36411  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386145,023,439 - 145,023,536UniSTSGRCm38
MGSCv376144,971,959 - 144,972,056UniSTSGRCm37
Celera6148,088,146 - 148,088,243UniSTS
Celera6148,079,212 - 148,079,309UniSTS
Cytogenetic Map6G3UniSTS
cM Map673.9UniSTS
Bcat1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6G3UniSTS
cM Map673.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115242853146429238Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129428986149736546Mouse
1301820Mop1_mmorphine preference 1 (mouse)Not determined6132601042146429238Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125323797149736546Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115569842149572401Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120439808149736546Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115601042149601187Mouse
4141536Idd6.2_minsulin dependent diabetes susceptibility 6.2 (mouse)Not determined6143610925146313558Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128655856149736546Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6130052456149736546Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115569842149572401Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129428986149736546Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117082986149736546Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114368732145656013Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129633481149736546Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128655856149736546Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115569842149572401Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129428986149736546Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116852888149736546Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124357314145656013Mouse
15092053Wegrme2_mweek eight growth rate, maternal effect 2 (mouse)6140500000147300000Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128235142149736546Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111165485145165578Mouse
12879916Shm5_msperm head morphology 5 (mouse)6132289569145656013Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112269957147052561Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128655856149736546Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130254857149736546Mouse
15092061Wfigrme1_mweek five growth rate, maternal effect 1 (mouse)6140500000147300000Mouse
14746990Manh61_mmandible shape 61 (mouse)6130254857149736546Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3011
Count of miRNA genes:927
Interacting mature miRNAs:1273
Transcripts:ENSMUST00000032402, ENSMUST00000048252, ENSMUST00000111742, ENSMUST00000123930, ENSMUST00000136819, ENSMUST00000145911, ENSMUST00000149769, ENSMUST00000154611, ENSMUST00000155693
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW491045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY781109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S66383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U42443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X17502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032402   ⟹   ENSMUSP00000032402
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6144,993,835 - 145,048,812 (-)Ensembl
RefSeq Acc Id: ENSMUST00000048252   ⟹   ENSMUSP00000039744
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6145,004,118 - 145,076,184 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111742   ⟹   ENSMUSP00000107371
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6144,999,158 - 145,076,184 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123930   ⟹   ENSMUSP00000120180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6145,019,192 - 145,047,853 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136819   ⟹   ENSMUSP00000117708
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6145,015,676 - 145,032,843 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145911
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6145,004,398 - 145,035,197 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149769   ⟹   ENSMUSP00000116091
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6145,032,809 - 145,047,661 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154611
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6145,032,873 - 145,040,867 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155693
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6145,032,790 - 145,040,755 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204138   ⟹   ENSMUSP00000144968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6145,007,730 - 145,048,610 (-)Ensembl
RefSeq Acc Id: NM_001024468   ⟹   NP_001019639
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396144,939,561 - 144,994,538 (-)NCBI
GRCm386144,993,835 - 145,048,812 (-)NCBI
MGSCv376144,942,355 - 145,024,677 (-)RGD
Celera6148,047,506 - 148,145,066 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007532   ⟹   NP_031558
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396144,939,561 - 145,021,883 (-)NCBI
GRCm386144,993,835 - 145,076,157 (-)NCBI
MGSCv376144,942,355 - 145,024,677 (-)RGD
Celera6148,047,506 - 148,145,066 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011241566   ⟹   XP_011239868
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396144,939,561 - 144,994,150 (-)NCBI
GRCm386144,993,835 - 145,048,424 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031558   ⟸   NM_007532
- Peptide Label: isoform 2
- UniProtKB: P24288 (UniProtKB/Swiss-Prot),   Q3TJN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001019639   ⟸   NM_001024468
- Peptide Label: isoform 1
- UniProtKB: Q8CBC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239868   ⟸   XM_011241566
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000144968   ⟸   ENSMUST00000204138
RefSeq Acc Id: ENSMUSP00000107371   ⟸   ENSMUST00000111742
RefSeq Acc Id: ENSMUSP00000032402   ⟸   ENSMUST00000032402
RefSeq Acc Id: ENSMUSP00000039744   ⟸   ENSMUST00000048252
RefSeq Acc Id: ENSMUSP00000116091   ⟸   ENSMUST00000149769
RefSeq Acc Id: ENSMUSP00000120180   ⟸   ENSMUST00000123930
RefSeq Acc Id: ENSMUSP00000117708   ⟸   ENSMUST00000136819

Promoters
RGD ID:6838986
Promoter ID:MM_KWN:48188
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000062291
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366144,983,836 - 144,984,336 (-)MPROMDB
RGD ID:6838985
Promoter ID:MM_KWN:48191
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:ENSMUST00000087468,   OTTMUST00000062269
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366144,997,091 - 144,997,591 (-)MPROMDB
RGD ID:6838983
Promoter ID:MM_KWN:48193
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000048252,   ENSMUST00000111742
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366145,024,256 - 145,024,756 (-)MPROMDB
RGD ID:6891472
Promoter ID:EPDNEW_M9186
Type:initiation region
Name:Bcat1_1
Description:Mus musculus branched chain aminotransferase 1, cytosolic , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9187  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386145,048,767 - 145,048,827EPDNEW
RGD ID:6891474
Promoter ID:EPDNEW_M9187
Type:initiation region
Name:Bcat1_2
Description:Mus musculus branched chain aminotransferase 1, cytosolic , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9186  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386145,076,053 - 145,076,113EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104861 AgrOrtholog
Ensembl Genes ENSMUSG00000030268 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032402 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000039744 UniProtKB/TrEMBL
  ENSMUSP00000107371 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116091 UniProtKB/TrEMBL
  ENSMUSP00000117708 UniProtKB/TrEMBL
  ENSMUSP00000120180 UniProtKB/TrEMBL
  ENSMUSP00000144968 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032402 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000048252 UniProtKB/TrEMBL
  ENSMUST00000111742 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000123930 UniProtKB/TrEMBL
  ENSMUST00000136819 UniProtKB/TrEMBL
  ENSMUST00000149769 UniProtKB/TrEMBL
  ENSMUST00000204138 UniProtKB/TrEMBL
Gene3D-CATH 3.20.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.470.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aminotrans_IV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotrans_IV_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotransferase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B_amino_transII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT_family UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12035 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104861 ENTREZGENE
NCBI Gene 12035 ENTREZGENE
Pfam Aminotran_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bcat1 PhenoGen
PIRSF BCAT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56752 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs ilvE_II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.4606 ENTREZGENE
UniProt A0A0N4SV61_MOUSE UniProtKB/TrEMBL
  B2KFA8_MOUSE UniProtKB/TrEMBL
  B2KFA9_MOUSE UniProtKB/TrEMBL
  BCAT1_MOUSE UniProtKB/Swiss-Prot
  E9Q4K3_MOUSE UniProtKB/TrEMBL
  F6YUH3_MOUSE UniProtKB/TrEMBL
  P24288 ENTREZGENE
  Q3TJN1 ENTREZGENE, UniProtKB/TrEMBL
  Q3TKJ1_MOUSE UniProtKB/TrEMBL
  Q8CBC8 ENTREZGENE, UniProtKB/TrEMBL
  Q9CXX6_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q7TMT2 UniProtKB/Swiss-Prot