Scarb1 (scavenger receptor class B, member 1) - Rat Genome Database

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Gene: Scarb1 (scavenger receptor class B, member 1) Mus musculus
Analyze
Symbol: Scarb1
Name: scavenger receptor class B, member 1
RGD ID: 735634
MGI Page MGI
Description: Enables amyloid-beta binding activity; apolipoprotein binding activity; and high-density lipoprotein particle binding activity. Involved in several processes, including lipid homeostasis; lipid transport; and regulation of lipid metabolic process. Acts upstream of or within several processes, including blood vessel endothelial cell migration; cholesterol catabolic process; and lipid transport. Located in caveola; cell surface; and cytoplasm. Is integral component of plasma membrane. Is expressed in several structures, including alimentary system; brain; early conceptus; hemolymphoid system gland; and reproductive system. Orthologous to human SCARB1 (scavenger receptor class B member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI120173; CD36; Cd36l; Cd36l1; Chohd; Chohd1; Cla; Cla-1; Cla1; D5Ertd460; D5Ertd460e; HDL QTL 1; Hdlq; Hdlq1; Hlb39; Hlb398; mSR-BI; S; scavenger receptor class B member 1; scavenger receptor class B type I; scavenger receptor class B1; Sr; SR-B1; SR-BI; Srb1; SRBI
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395125,354,151 - 125,418,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5125,354,151 - 125,418,158 (-)EnsemblGRCm39 Ensembl
GRCm385125,277,087 - 125,341,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5125,277,087 - 125,341,094 (-)EnsemblGRCm38mm10GRCm38
MGSCv375125,757,460 - 125,821,444 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,566,069 - 125,630,053 (-)NCBIMGSCv36mm8
Celera5122,296,944 - 122,361,197 (-)NCBICelera
Cytogenetic Map5G1.1NCBI
cM Map564.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (ISO)
(E)-thiamethoxam  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (EXP)
1-naphthyl isothiocyanate  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-methoxyethanol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4-hydroxynon-2-enal  (ISO)
4-methylimidazole  (ISO)
7,12-dimethyltetraphene  (ISO)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (ISO)
acetylsalicylic acid  (EXP,ISO)
aconitine  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinyl palmitate  (ISO)
allethrin  (ISO)
aluminium oxide  (ISO)
ammonium chloride  (ISO)
androgen antagonist  (ISO)
Aroclor 1254  (ISO)
arotinoid acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atorvastatin calcium  (ISO)
atrazine  (EXP,ISO)
Bardoxolone methyl  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-carotene  (ISO)
bifenthrin  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bromocriptine  (ISO)
bucladesine  (EXP,ISO)
buspirone  (ISO)
Butylbenzyl phthalate  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
chenodeoxycholic acid  (ISO)
CHIR 99021  (ISO)
chlordecone  (EXP)
chloroquine  (EXP,ISO)
cholesterol  (EXP)
cholic acid  (EXP)
choline  (EXP)
cisplatin  (EXP,ISO)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
coumestrol  (ISO)
curcumin  (EXP)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
cyproconazole  (EXP)
DDE  (ISO)
DDT  (ISO)
decabromodiphenyl ether  (ISO)
deoxycholic acid  (ISO)
dexamethasone  (EXP,ISO)
Di-n-hexyl phthalate  (ISO)
diazinon  (ISO)
dibenziodolium  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
Dicyclohexyl phthalate  (ISO)
diethyl maleate  (ISO)
diethyl phthalate  (ISO)
diheptyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
Diisodecyl phthalate  (ISO)
diisononyl phthalate  (ISO)
Dimethyl phthalate  (ISO)
diosgenin  (ISO)
dipentyl phthalate  (ISO)
disodium selenite  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
ezetimibe  (ISO)
fenofibrate  (EXP,ISO)
fenvalerate  (ISO)
flavonoids  (ISO)
folic acid  (EXP)
fructose  (ISO)
genistein  (EXP)
glafenine  (ISO)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
GW 3965  (ISO)
GW 4064  (EXP,ISO)
hexaconazole  (EXP)
high-density lipoprotein cholesterol  (EXP,ISO)
hydrogen peroxide  (ISO)
iron trichloride  (EXP)
kojic acid  (EXP)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP,ISO)
lithocholic acid  (EXP,ISO)
losartan  (EXP)
lovastatin  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methyltestosterone  (ISO)
Mezerein  (EXP)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monocrotophos  (ISO)
monosodium L-glutamate  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
N-tosyl-L-phenylalanyl chloromethyl ketone  (EXP)
nefazodone  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
nicotinic acid  (ISO)
obeticholic acid  (ISO)
okadaic acid  (EXP)
oxaliplatin  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentachlorophenol  (EXP)
perfluorododecanoic acid  (ISO)
perfluorohexanesulfonic acid  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
perfluoroundecanoic acid  (ISO)
phencyclidine  (ISO)
phenobarbital  (EXP)
phenytoin  (EXP)
PhIP  (ISO)
pioglitazone  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (EXP)
propiconazole  (EXP)
resveratrol  (ISO)
rifampicin  (ISO)
rimonabant  (EXP)
ritonavir  (ISO)
Ro 31-8220  (ISO)
rotenone  (ISO)
saccharin  (EXP)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
selenomethionine  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
simvastatin  (EXP,ISO)
sodium arsenite  (EXP)
sodium dichromate  (EXP)
Sodium salicylate  (ISO)
sucrose  (ISO)
sulfadimethoxine  (EXP)
sulpiride  (ISO)
temozolomide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thiamethoxam  (ISO)
thioacetamide  (ISO)
tin(II) chloride (anhydrous)  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (EXP)
triphenyl phosphate  (EXP)
triphenylstannane  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
undecane  (ISO)
valproic acid  (EXP,ISO)
vecuronium bromide  (ISO)
vinclozolin  (ISO)
XAV939  (ISO)
zinc dichloride  (EXP)
ziram  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adrenal gland physiology  (IAGP)
abnormal cellular cholesterol metabolism  (IAGP)
abnormal cholesterol homeostasis  (IAGP)
abnormal cholesterol level  (IAGP)
abnormal circulating cholesterol level  (IAGP)
abnormal circulating HDL cholesterol level  (IAGP)
abnormal coronary artery morphology  (IAGP)
abnormal egg activation  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal erythrocyte morphology  (IAGP)
abnormal female meiosis  (IAGP)
abnormal heart morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal lipid level  (IAGP)
abnormal liver physiology  (IAGP)
abnormal oocyte morphology  (IAGP)
abnormal sinus arrhythmia  (IEA)
abnormal vascular wound healing  (IAGP)
anemia  (IAGP)
artery occlusion  (IAGP)
atherosclerotic lesions  (IAGP)
cardiovascular system phenotype  (IEA)
decreased circulating HDL cholesterol level  (IAGP)
decreased heart rate  (IEA)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased vertical activity  (IEA)
echinocytosis  (IAGP)
enlarged heart  (IEA)
enlarged spleen  (IEA)
failure of zygotic cell division  (IAGP)
female infertility  (IAGP)
hypochromic macrocytic anemia  (IAGP)
impaired fertilization  (IAGP)
increased cholesterol level  (IAGP)
increased circulating cholesterol level  (IAGP)
increased circulating HDL cholesterol level  (IAGP)
increased circulating interleukin-6 level  (IAGP)
increased circulating LDL cholesterol level  (IAGP)
increased circulating phospholipid level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased heart weight  (IAGP)
increased spleen weight  (IEA)
increased susceptibility to atherosclerosis  (IAGP)
macrocytosis  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
oocyte degeneration  (IAGP)
poikilocytosis  (IAGP)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
prolonged PQ interval  (IEA)
prolonged RR interval  (IEA)
prolonged ST segment  (IEA)
reticulocytosis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Mechanisms involved in the intestinal absorption of dietary vitamin A and provitamin A carotenoids. Harrison EH Biochim Biophys Acta. 2012 Jan;1821(1):70-7. Epub 2011 Jun 12.
2. Characterization and chromosomal localization of rat scavenger receptor class B type I, a high density lipoprotein receptor with a putative leucine zipper domain and peroxisomal targeting sequence. Johnson MS, etal., Endocrinology 1998 Jan;139(1):72-80.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Reverse cholesterol transport and cholesterol efflux in atherosclerosis. Ohashi R, etal., QJM. 2005 Dec;98(12):845-56. Epub 2005 Oct 28.
9. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. Dimerization of the scavenger receptor class B type I: formation, function, and localization in diverse cells and tissues. Reaven E, etal., J Lipid Res. 2004 Mar;45(3):513-28. Epub 2003 Dec 1.
13. Mouse MP Annotation Import Pipeline RGD automated import pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. The role of scavenger receptor class B type I (SR-BI) in lipid trafficking. defining the rules for lipid traders. Rhainds D and Brissette L, Int J Biochem Cell Biol. 2004 Jan;36(1):39-77.
17. Cloning and genomic localization of the murine LPS-induced CXC chemokine (LIX) gene, Scyb5. Smith JB, etal., Immunogenetics 2002 Nov;54(8):599-603. Epub 2002 Oct 1.
18. Diet-induced occlusive coronary atherosclerosis, myocardial infarction, cardiac dysfunction, and premature death in scavenger receptor class B type I-deficient, hypomorphic apolipoprotein ER61 mice. Zhang S, etal., Circulation. 2005 Jun 28;111(25):3457-64. Epub 2005 Jun 20.
Additional References at PubMed
PMID:7520436   PMID:8560269   PMID:8753864   PMID:8798380   PMID:8889548   PMID:8969220   PMID:9148942   PMID:9163428   PMID:9211901   PMID:9254056   PMID:9254074   PMID:9356497  
PMID:9383292   PMID:9407090   PMID:9539787   PMID:9548583   PMID:9974430   PMID:10066776   PMID:10224152   PMID:10349636   PMID:10430941   PMID:10438476   PMID:10478838   PMID:10482304  
PMID:10518574   PMID:10559220   PMID:10680042   PMID:10712397   PMID:10751392   PMID:10764675   PMID:10772649   PMID:10884299   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11108726  
PMID:11116096   PMID:11181745   PMID:11208732   PMID:11240025   PMID:11278646   PMID:11714849   PMID:11733567   PMID:11861300   PMID:11861414   PMID:11861652   PMID:11880569   PMID:11893773  
PMID:11907136   PMID:11923102   PMID:11937630   PMID:12000760   PMID:12006675   PMID:12016218   PMID:12110672   PMID:12117557   PMID:12117558   PMID:12235173   PMID:12356718   PMID:12376530  
PMID:12401888   PMID:12429731   PMID:12438696   PMID:12472775   PMID:12477932   PMID:12493702   PMID:12639961   PMID:12727230   PMID:12730208   PMID:12771386   PMID:12805272   PMID:12810817  
PMID:12816880   PMID:12829524   PMID:12904583   PMID:12917427   PMID:14528013   PMID:14570884   PMID:14581413   PMID:14610273   PMID:14643015   PMID:14718538   PMID:14726490   PMID:14729860  
PMID:14748727   PMID:14967816   PMID:14970197   PMID:14993241   PMID:15060063   PMID:15105424   PMID:15210842   PMID:15210959   PMID:15265030   PMID:15280390   PMID:15314100   PMID:15331403  
PMID:15342683   PMID:15489334   PMID:15533830   PMID:15539616   PMID:15561721   PMID:15654132   PMID:15692099   PMID:15749707   PMID:15758158   PMID:15782199   PMID:15837786   PMID:15841181  
PMID:15866482   PMID:15944188   PMID:16061955   PMID:16120612   PMID:16141072   PMID:16141073   PMID:16200214   PMID:16263415   PMID:16269665   PMID:16339487   PMID:16380385   PMID:16397139  
PMID:16410302   PMID:16421100   PMID:16461760   PMID:16498401   PMID:16574909   PMID:16600185   PMID:16624615   PMID:16647293   PMID:16816107   PMID:16867981   PMID:16919281   PMID:16926440  
PMID:16964311   PMID:16971476   PMID:17055779   PMID:17071747   PMID:17079793   PMID:17148552   PMID:17222414   PMID:17272756   PMID:17272829   PMID:17299204   PMID:17363694   PMID:17389516  
PMID:17399905   PMID:17442616   PMID:17536039   PMID:17657311   PMID:17709636   PMID:17717299   PMID:17719144   PMID:17761631   PMID:17906976   PMID:17954936   PMID:17960026   PMID:17967808  
PMID:17993610   PMID:18037706   PMID:18064300   PMID:18093975   PMID:18174467   PMID:18175806   PMID:18204096   PMID:18245842   PMID:18287559   PMID:18332148   PMID:18340042   PMID:18342019  
PMID:18375996   PMID:18403724   PMID:18436807   PMID:18436808   PMID:18511744   PMID:18513727   PMID:18544532   PMID:18599737   PMID:18641187   PMID:18757346   PMID:18772481   PMID:18775956  
PMID:18779053   PMID:18779054   PMID:18842588   PMID:18930459   PMID:18992221   PMID:19136670   PMID:19179307   PMID:19179658   PMID:19252221   PMID:19304574   PMID:19420333   PMID:19454765  
PMID:19491399   PMID:19637290   PMID:19654867   PMID:19723664   PMID:19796621   PMID:19941833   PMID:19996107   PMID:20018934   PMID:20041149   PMID:20149374   PMID:20219439   PMID:20404351  
PMID:20417197   PMID:20431066   PMID:20471681   PMID:20508162   PMID:20562441   PMID:20629037   PMID:20739281   PMID:20830789   PMID:20927103   PMID:21051668   PMID:21071707   PMID:21076037  
PMID:21267068   PMID:21315353   PMID:21378177   PMID:21454568   PMID:21454587   PMID:21481393   PMID:21546579   PMID:21602281   PMID:21631281   PMID:21654804   PMID:21675794   PMID:21677750  
PMID:21746906   PMID:21820658   PMID:21836069   PMID:21840001   PMID:21859969   PMID:21873635   PMID:21929836   PMID:21940512   PMID:22190590   PMID:22205027   PMID:22262054   PMID:22302708  
PMID:22327076   PMID:22383685   PMID:22424930   PMID:22481067   PMID:22589557   PMID:22610093   PMID:22652597   PMID:22672264   PMID:22767607   PMID:22802462   PMID:22988039   PMID:23023567  
PMID:23045399   PMID:23071157   PMID:23112879   PMID:23202366   PMID:23221804   PMID:23401258   PMID:23520536   PMID:23564696   PMID:23663736   PMID:23676500   PMID:23720744   PMID:23722970  
PMID:23812625   PMID:23911886   PMID:23921086   PMID:23936087   PMID:23950999   PMID:23967310   PMID:23990661   PMID:24082102   PMID:24194600   PMID:24253048   PMID:24603680   PMID:24719333  
PMID:24908654   PMID:24928939   PMID:24935924   PMID:24952961   PMID:24969774   PMID:25181357   PMID:25211142   PMID:25281615   PMID:25336169   PMID:25368174   PMID:25461971   PMID:25701869  
PMID:25852127   PMID:25886360   PMID:25947382   PMID:25964513   PMID:25983325   PMID:26059978   PMID:26092999   PMID:26108225   PMID:26138463   PMID:26255968   PMID:26322417   PMID:26334034  
PMID:26431876   PMID:26504816   PMID:26511855   PMID:26602218   PMID:26652912   PMID:26865459   PMID:26981684   PMID:27031383   PMID:27146480   PMID:27373983   PMID:27381048   PMID:27618957  
PMID:27626380   PMID:27694217   PMID:27694929   PMID:28063350   PMID:28147282   PMID:28162952   PMID:28216043   PMID:28422089   PMID:28522295   PMID:28701710   PMID:28765047   PMID:28910310  
PMID:28986362   PMID:29162602   PMID:29212953   PMID:29273789   PMID:29277016   PMID:29282300   PMID:29407889   PMID:29523748   PMID:29541944   PMID:29748333   PMID:29787826   PMID:29879989  
PMID:29899187   PMID:29976771   PMID:30144814   PMID:30278990   PMID:30290792   PMID:30354229   PMID:30356742   PMID:30419936   PMID:30940800   PMID:31019307   PMID:31119270   PMID:31423535  
PMID:31462534   PMID:31467425   PMID:31562240   PMID:31678516   PMID:31733201   PMID:31863970   PMID:31941380   PMID:32044963   PMID:32170842   PMID:32358065   PMID:32369415   PMID:32522007  
PMID:32782257   PMID:33013468   PMID:33057430   PMID:33374266   PMID:33462514   PMID:33631309   PMID:33927296   PMID:34032267   PMID:34097506   PMID:34380332   PMID:34461308   PMID:34551590  
PMID:34680102   PMID:35349600   PMID:35435123  


Genomics

Comparative Map Data
Scarb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395125,354,151 - 125,418,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5125,354,151 - 125,418,158 (-)EnsemblGRCm39 Ensembl
GRCm385125,277,087 - 125,341,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5125,277,087 - 125,341,094 (-)EnsemblGRCm38mm10GRCm38
MGSCv375125,757,460 - 125,821,444 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,566,069 - 125,630,053 (-)NCBIMGSCv36mm8
Celera5122,296,944 - 122,361,197 (-)NCBICelera
Cytogenetic Map5G1.1NCBI
cM Map564.11NCBI
SCARB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812124,776,856 - 124,863,864 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12124,776,856 - 124,882,668 (-)EnsemblGRCh38hg38GRCh38
GRCh3712125,261,402 - 125,348,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612123,828,127 - 123,914,472 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412123,787,055 - 123,873,214NCBI
Celera12124,862,283 - 124,949,187 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12122,224,152 - 122,310,029 (-)NCBIHuRef
CHM1_112125,083,775 - 125,169,604 (-)NCBICHM1_1
T2T-CHM13v2.012124,782,134 - 124,869,001 (-)NCBIT2T-CHM13v2.0
Scarb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21231,296,143 - 31,362,649 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,296,156 - 31,362,647 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1232,468,363 - 32,534,776 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01233,079,673 - 33,146,089 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01232,131,509 - 32,197,925 (+)NCBIRnor_WKY
Rnor_6.01236,694,952 - 36,761,445 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1236,694,960 - 36,761,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01238,572,152 - 38,638,465 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41232,390,183 - 32,457,661 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,253,570 - 32,321,047 (+)NCBI
Celera1232,988,597 - 33,054,666 (+)NCBICelera
Cytogenetic Map12q15NCBI
Scarb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554824,813,955 - 4,837,392 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554824,813,502 - 4,836,479 (+)NCBIChiLan1.0ChiLan1.0
SCARB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112126,651,077 - 126,698,506 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12126,659,532 - 126,694,767 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012122,293,803 - 122,455,314 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SCARB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,035,797 - 5,122,383 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,049,407 - 5,121,468 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,195,714 - 5,282,186 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,282,168 - 5,368,989 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,295,032 - 5,368,981 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1265,217,039 - 5,303,430 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,308,627 - 5,394,876 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0265,260,548 - 5,347,101 (+)NCBIUU_Cfam_GSD_1.0
Scarb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,927,028 - 158,948,613 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936558530,828 - 555,098 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCARB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1428,301,294 - 28,393,568 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11428,301,421 - 28,393,568 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21430,050,898 - 30,093,735 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCARB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111120,134,485 - 120,223,512 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11120,134,874 - 120,216,904 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037125,058,937 - 125,145,319 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scarb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,973,648 - 24,010,820 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,970,782 - 24,010,683 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
Scarb1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G1.1UniSTS
RH135905  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385125,277,465 - 125,277,667UniSTSGRCm38
MGSCv375125,757,835 - 125,758,037UniSTSGRCm37
Celera5122,297,319 - 122,297,521UniSTS
Cytogenetic Map5G1.1UniSTS
D5Ertd460e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385125,277,130 - 125,277,344UniSTSGRCm38
MGSCv375125,757,500 - 125,757,714UniSTSGRCm37
Celera5122,296,984 - 122,297,198UniSTS
Cytogenetic Map5G1.1UniSTS
cM Map568.0UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2067
Count of miRNA genes:666
Interacting mature miRNAs:850
Transcripts:ENSMUST00000086075, ENSMUST00000111390, ENSMUST00000123338, ENSMUST00000124582, ENSMUST00000127148, ENSMUST00000133624, ENSMUST00000135736, ENSMUST00000137783, ENSMUST00000148373, ENSMUST00000156532
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001205082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001205083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY018765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U37799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000086075   ⟹   ENSMUSP00000083242
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,354,151 - 125,418,158 (-)Ensembl
GRCm38.p6 Ensembl5125,277,087 - 125,341,094 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111390   ⟹   ENSMUSP00000107021
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,354,153 - 125,418,135 (-)Ensembl
GRCm38.p6 Ensembl5125,277,089 - 125,341,071 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123338
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,374,383 - 125,381,606 (-)Ensembl
GRCm38.p6 Ensembl5125,297,319 - 125,304,542 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124582
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,354,851 - 125,361,223 (-)Ensembl
GRCm38.p6 Ensembl5125,277,787 - 125,284,159 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127148   ⟹   ENSMUSP00000122100
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,354,630 - 125,371,173 (-)Ensembl
GRCm38.p6 Ensembl5125,277,566 - 125,294,109 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133624
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,377,424 - 125,393,696 (-)Ensembl
GRCm38.p6 Ensembl5125,300,360 - 125,316,632 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135736
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,360,014 - 125,363,741 (-)Ensembl
GRCm38.p6 Ensembl5125,282,950 - 125,286,677 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137783   ⟹   ENSMUSP00000117170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,380,253 - 125,417,072 (-)Ensembl
GRCm38.p6 Ensembl5125,303,189 - 125,340,008 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148373
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,360,419 - 125,418,083 (-)Ensembl
GRCm38.p6 Ensembl5125,283,355 - 125,341,019 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156532
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,381,313 - 125,403,331 (-)Ensembl
GRCm38.p6 Ensembl5125,304,249 - 125,326,267 (-)Ensembl
RefSeq Acc Id: ENSMUST00000197310
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5125,402,325 - 125,404,783 (-)Ensembl
GRCm38.p6 Ensembl5125,325,261 - 125,327,719 (-)Ensembl
RefSeq Acc Id: NM_001205082   ⟹   NP_001192011
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395125,354,151 - 125,418,158 (-)NCBI
GRCm385125,277,087 - 125,341,094 (-)NCBI
Celera5122,296,941 - 122,361,217 (-)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001205083   ⟹   NP_001192012
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395125,360,380 - 125,418,158 (-)NCBI
GRCm385125,283,316 - 125,341,094 (-)NCBI
Celera5122,296,941 - 122,361,217 (-)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_016741   ⟹   NP_058021
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395125,354,151 - 125,418,158 (-)NCBI
GRCm385125,277,087 - 125,341,094 (-)NCBI
MGSCv375125,757,460 - 125,821,444 (-)RGD
Celera5122,296,941 - 122,361,217 (-)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017320764   ⟹   XP_017176253
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395125,360,205 - 125,404,778 (-)NCBI
GRCm385125,283,141 - 125,327,714 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254308   ⟹   XP_030110168
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395125,360,205 - 125,404,783 (-)NCBI
GRCm385125,283,141 - 125,327,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254309   ⟹   XP_030110169
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395125,360,205 - 125,403,717 (-)NCBI
GRCm385125,283,141 - 125,327,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254310   ⟹   XP_030110170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395125,354,151 - 125,404,783 (-)NCBI
GRCm385125,277,087 - 125,327,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164950   ⟹   XP_036020843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395125,354,151 - 125,404,795 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058021   ⟸   NM_016741
- Peptide Label: isoform 1
- UniProtKB: Q9CWJ7 (UniProtKB/Swiss-Prot),   Q61009 (UniProtKB/Swiss-Prot),   A0A8C6GJV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001192011   ⟸   NM_001205082
- Peptide Label: isoform 2
- UniProtKB: Q61009 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001192012   ⟸   NM_001205083
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: XP_017176253   ⟸   XM_017320764
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030110170   ⟸   XM_030254310
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030110168   ⟸   XM_030254308
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030110169   ⟸   XM_030254309
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000107021   ⟸   ENSMUST00000111390
RefSeq Acc Id: ENSMUSP00000083242   ⟸   ENSMUST00000086075
RefSeq Acc Id: ENSMUSP00000122100   ⟸   ENSMUST00000127148
RefSeq Acc Id: ENSMUSP00000117170   ⟸   ENSMUST00000137783
RefSeq Acc Id: XP_036020843   ⟸   XM_036164950
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61009-F1-model_v2 AlphaFold Q61009 1-509 view protein structure

Promoters
RGD ID:6888134
Promoter ID:EPDNEW_M7518
Type:initiation region
Name:Scarb1_1
Description:Mus musculus scavenger receptor class B, member 1 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385125,341,064 - 125,341,124EPDNEW
RGD ID:6838291
Promoter ID:MM_KWN:44138
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000054574
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365125,764,261 - 125,764,761 (-)MPROMDB
RGD ID:6838285
Promoter ID:MM_KWN:44139
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000054568
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365125,766,456 - 125,766,956 (-)MPROMDB
RGD ID:6838286
Promoter ID:MM_KWN:44140
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000054569
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365125,774,141 - 125,774,641 (-)MPROMDB
RGD ID:6838289
Promoter ID:MM_KWN:44141
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000054573
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365125,784,906 - 125,785,406 (-)MPROMDB
RGD ID:6838288
Promoter ID:MM_KWN:44143
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000054571
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365125,806,156 - 125,806,656 (-)MPROMDB
RGD ID:6838287
Promoter ID:MM_KWN:44144
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   Spleen
Transcripts:OTTMUST00000054570
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365125,819,976 - 125,821,022 (-)MPROMDB
RGD ID:6838292
Promoter ID:MM_KWN:44145
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000054565,   UC008ZRE.1,   UC008ZRF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365125,821,131 - 125,821,631 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:893578 AgrOrtholog
Ensembl Genes ENSMUSG00000037936 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000083242 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107021 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117170.3 UniProtKB/TrEMBL
  ENSMUSP00000122100.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000086075 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111390 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000127148.2 UniProtKB/TrEMBL
  ENSMUST00000137783.3 UniProtKB/TrEMBL
  ENSMUST00000148373 ENTREZGENE
InterPro CD36/SCARB1/SNMP1 UniProtKB/Swiss-Prot
  CD36_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20778 UniProtKB/Swiss-Prot
MGD MGI:893578 ENTREZGENE
NCBI Gene 20778 ENTREZGENE
PANTHER PTHR11923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CD36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Scarb1 PhenoGen
PRINTS CD36ANTIGEN UniProtKB/Swiss-Prot
  CD36FAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C6GJV2 ENTREZGENE
  D3Z5U8_MOUSE UniProtKB/TrEMBL
  F7C5U2_MOUSE UniProtKB/TrEMBL
  Q61009 ENTREZGENE
  Q8BNQ0_MOUSE UniProtKB/TrEMBL
  Q9CWJ7 ENTREZGENE
  SCRB1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary D3Z2V4 UniProtKB/Swiss-Prot
  Q3TZ42 UniProtKB/Swiss-Prot
  Q4FK30 UniProtKB/Swiss-Prot
  Q9CWJ7 UniProtKB/Swiss-Prot