Rabggta (Rab geranylgeranyl transferase, a subunit) - Rat Genome Database

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Gene: Rabggta (Rab geranylgeranyl transferase, a subunit) Mus musculus
Analyze
Symbol: Rabggta
Name: Rab geranylgeranyl transferase, a subunit
RGD ID: 735604
MGI Page MGI
Description: Enables Rab geranylgeranyltransferase activity. Predicted to be part of Rab-protein geranylgeranyltransferase complex. Predicted to be active in cytoplasm. Used to study Hermansky-Pudlak syndrome. Orthologous to human RABGGTA (Rab geranylgeranyltransferase subunit alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: geranylgeranyl transferase type II subunit alpha; geranylgeranyl transferase type-2 subunit alpha; gm; gunmetal; rab geranyl-geranyltransferase subunit alpha; rab geranylgeranyltransferase subunit alpha; rab GG transferase alpha; rab GGTase alpha
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,953,321 - 55,959,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,952,873 - 55,959,720 (-)EnsemblGRCm39 Ensembl
GRCm381455,715,864 - 55,722,263 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,715,416 - 55,722,263 (-)EnsemblGRCm38mm10GRCm38
MGSCv371456,334,714 - 56,341,013 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,669,948 - 54,676,247 (-)NCBIMGSCv36mm8
Celera1453,520,890 - 53,527,189 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7544156   PMID:7703484   PMID:8490171   PMID:8833241   PMID:8889548   PMID:9714600   PMID:10193444   PMID:10349636   PMID:10486237   PMID:10737774   PMID:11041359   PMID:11042159  
PMID:11076861   PMID:11266472   PMID:11972527   PMID:12122117   PMID:12445206   PMID:12477932   PMID:12907454   PMID:14610273   PMID:15188402   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18685105   PMID:18715234   PMID:18799693   PMID:21267068   PMID:21419243   PMID:21677750   PMID:21776414   PMID:21873635   PMID:27626380   PMID:32325033  


Genomics

Comparative Map Data
Rabggta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,953,321 - 55,959,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,952,873 - 55,959,720 (-)EnsemblGRCm39 Ensembl
GRCm381455,715,864 - 55,722,263 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,715,416 - 55,722,263 (-)EnsemblGRCm38mm10GRCm38
MGSCv371456,334,714 - 56,341,013 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,669,948 - 54,676,247 (-)NCBIMGSCv36mm8
Celera1453,520,890 - 53,527,189 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
RABGGTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,265,538 - 24,271,627 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,265,538 - 24,271,611 (-)EnsemblGRCh38hg38GRCh38
GRCh371424,734,744 - 24,740,833 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,804,584 - 23,810,643 (-)NCBINCBI36Build 36hg18NCBI36
Build 341423,804,585 - 23,810,643NCBI
Celera144,599,360 - 4,605,419 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef144,849,901 - 4,855,990 (-)NCBIHuRef
CHM1_11424,733,345 - 24,739,434 (-)NCBICHM1_1
T2T-CHM13v2.01418,463,884 - 18,469,973 (-)NCBIT2T-CHM13v2.0
Rabggta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,176,268 - 33,183,320 (-)NCBIGRCr8
mRatBN7.21529,206,328 - 29,213,398 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,206,157 - 29,213,348 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1531,052,659 - 31,059,003 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01532,199,884 - 32,206,228 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,442,218 - 30,448,562 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01534,393,419 - 34,400,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,393,233 - 34,400,449 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,283,389 - 38,290,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,862,275 - 33,868,619 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,877,146 - 33,883,992 (-)NCBI
Celera1528,783,370 - 28,789,714 (-)NCBICelera
Cytogenetic Map15p13NCBI
RABGGTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,620,464 - 25,627,815 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,836,956 - 24,843,040 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,041,694 - 5,047,775 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,165,254 - 23,171,339 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,163,034 - 23,171,311 (-)Ensemblpanpan1.1panPan2
RABGGTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,244,731 - 4,250,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,244,781 - 4,250,744 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,166,409 - 4,172,506 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,355,507 - 4,361,606 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,355,513 - 4,361,532 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.184,045,886 - 4,051,978 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,107,715 - 4,113,807 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,370,053 - 4,376,415 (-)NCBIUU_Cfam_GSD_1.0
Rabggta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,099,444 - 36,105,342 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722283,544 - 290,429 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722283,682 - 289,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABGGTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,021,755 - 75,028,875 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,021,716 - 75,028,229 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,292,566 - 80,298,870 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RABGGTA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,248,637 - 1,254,937 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,248,393 - 1,266,254 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603612,933,353 - 12,939,556 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabggta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,230,893 - 8,236,843 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,230,560 - 8,236,843 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rabggta
145 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:598
Count of miRNA genes:273
Interacting mature miRNAs:307
Transcripts:ENSMUST00000062861, ENSMUST00000163889, ENSMUST00000169237
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF127654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY150143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD776583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX213914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000062861   ⟹   ENSMUSP00000061498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,953,334 - 55,959,633 (-)Ensembl
GRCm38.p6 Ensembl1455,715,877 - 55,722,176 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163889   ⟹   ENSMUSP00000128668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,953,782 - 55,959,720 (-)Ensembl
GRCm38.p6 Ensembl1455,716,325 - 55,722,263 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169237   ⟹   ENSMUSP00000133032
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,953,334 - 55,959,633 (-)Ensembl
GRCm38.p6 Ensembl1455,715,877 - 55,722,176 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,955,012 - 55,956,603 (-)Ensembl
GRCm38.p6 Ensembl1455,717,555 - 55,719,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227061   ⟹   ENSMUSP00000154725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,952,873 - 55,959,659 (-)Ensembl
GRCm38.p6 Ensembl1455,715,416 - 55,722,202 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,958,605 - 55,959,714 (-)Ensembl
GRCm38.p6 Ensembl1455,721,148 - 55,722,257 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,956,608 - 55,957,590 (-)Ensembl
GRCm38.p6 Ensembl1455,719,151 - 55,720,133 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,953,334 - 55,959,633 (-)Ensembl
GRCm38.p6 Ensembl1455,715,877 - 55,722,176 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,953,334 - 55,959,633 (-)Ensembl
GRCm38.p6 Ensembl1455,715,877 - 55,722,176 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1455,953,762 - 55,959,638 (-)Ensembl
GRCm38.p6 Ensembl1455,716,305 - 55,722,181 (-)Ensembl
RefSeq Acc Id: NM_001360387   ⟹   NP_001347316
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,953,321 - 55,959,720 (-)NCBI
GRCm381455,715,864 - 55,722,263 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001360388   ⟹   NP_001347317
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,953,321 - 55,959,659 (-)NCBI
GRCm381455,715,864 - 55,722,202 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019519   ⟹   NP_062392
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,953,321 - 55,959,380 (-)NCBI
GRCm381455,715,864 - 55,721,923 (-)NCBI
MGSCv371456,334,714 - 56,341,013 (-)RGD
Celera1453,520,890 - 53,527,189 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153435
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391455,953,321 - 55,959,659 (-)NCBI
GRCm381455,715,864 - 55,722,202 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_062392   ⟸   NM_019519
- UniProtKB: Q9JLX2 (UniProtKB/Swiss-Prot),   Q9JHK4 (UniProtKB/Swiss-Prot),   Q3UIH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347316   ⟸   NM_001360387
- UniProtKB: Q9JHK4 (UniProtKB/Swiss-Prot),   Q9JLX2 (UniProtKB/Swiss-Prot),   Q3UIH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347317   ⟸   NM_001360388
- UniProtKB: Q9JHK4 (UniProtKB/Swiss-Prot),   Q9JLX2 (UniProtKB/Swiss-Prot),   Q3UIH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000128668   ⟸   ENSMUST00000163889
RefSeq Acc Id: ENSMUSP00000133032   ⟸   ENSMUST00000169237
RefSeq Acc Id: ENSMUSP00000154725   ⟸   ENSMUST00000227061
RefSeq Acc Id: ENSMUSP00000061498   ⟸   ENSMUST00000062861
Protein Domains
Rab geranylgeranyltransferase alpha subunit insert-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JHK4-F1-model_v2 AlphaFold Q9JHK4 1-567 view protein structure

Promoters
RGD ID:8682464
Promoter ID:EPDNEW_M19263
Type:initiation region
Name:Rabggta_1
Description:Mus musculus Rab geranylgeranyl transferase, a subunit , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381455,722,257 - 55,722,317EPDNEW
RGD ID:6847135
Promoter ID:MM_ACW:16089
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:RABGGTA.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361456,338,806 - 56,340,067 (-)MPROMDB
RGD ID:6825325
Promoter ID:MM_KWN:16985
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:ENSMUST00000062861,   NM_019519,   UC007UAJ.1,   UC007UAL.1,   UC007UAM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361456,340,716 - 56,341,216 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860443 AgrOrtholog
Ensembl Genes ENSMUSG00000040472 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062861.15 UniProtKB/TrEMBL
  ENSMUST00000163889 ENTREZGENE
  ENSMUST00000163889.3 UniProtKB/Swiss-Prot
  ENSMUST00000169237 ENTREZGENE
  ENSMUST00000169237.8 UniProtKB/Swiss-Prot
  ENSMUST00000227061 ENTREZGENE
  ENSMUST00000227061.2 UniProtKB/Swiss-Prot
  ENSMUST00000228826 ENTREZGENE
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein prenylyltransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab geranylgeranyltransferase alpha-subunit, insert domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prenyl_trans_a UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RabGGT_asu_insert-dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RabGGT_asu_insert-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56187 UniProtKB/Swiss-Prot
MGD MGI:1860443 ENTREZGENE
NCBI Gene 56187 ENTREZGENE
PANTHER LRRCAP DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  NISCHARIN RELATED UniProtKB/TrEMBL
  PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11129:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRR_1 UniProtKB/TrEMBL
  PPTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RabGGT_insert UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rabggta PhenoGen
PROSITE PFTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Outer arm dynein light chain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein prenylyltransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49594 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2K6EDL0_MOUSE UniProtKB/TrEMBL
  PGTA_MOUSE UniProtKB/Swiss-Prot
  Q3UIH7 ENTREZGENE, UniProtKB/TrEMBL
  Q921J9_MOUSE UniProtKB/TrEMBL
  Q9JHK4 ENTREZGENE
  Q9JLX2 ENTREZGENE
UniProt Secondary Q9JLX2 UniProtKB/Swiss-Prot