Ntn1 (netrin 1) - Rat Genome Database

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Gene: Ntn1 (netrin 1) Mus musculus
Analyze
Symbol: Ntn1
Name: netrin 1
RGD ID: 735502
MGI Page MGI
Description: Predicted to be an extracellular matrix structural constituent. Involved in chemorepulsion of axon and regulation of synapse assembly. Acts upstream of or within several processes, including generation of neurons; inner ear morphogenesis; and regulation of neurogenesis. Located in basement membrane and cytoplasm. Is expressed in several structures, including alimentary system; central nervous system; integumental system; lung; and sensory organ. Human ortholog(s) of this gene implicated in congenital mirror movement disorder. Orthologous to human NTN1 (netrin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI561871; BC019633; Netr; netrin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,100,190 - 68,277,652 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,100,190 - 68,291,649 (-)EnsemblGRCm39 Ensembl
GRCm381168,209,364 - 68,386,826 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,209,364 - 68,400,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,022,866 - 68,200,328 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,029,201 - 68,202,315 (-)NCBIMGSCv36mm8
Celera1175,146,897 - 75,324,142 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cantharidin  (EXP)
CGP 52608  (ISO)
chrysene  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
cocaine  (ISO)
curcumin  (ISO)
DDT  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dieldrin  (ISO)
doxorubicin  (EXP,ISO)
ethanol  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
indometacin  (ISO)
inulin  (EXP)
kainic acid  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
malathion  (ISO)
maneb  (EXP)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nickel dichloride  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
propanal  (ISO)
rimonabant  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
streptozocin  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP)
tetraphene  (EXP)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
troglitazone  (EXP)
valproic acid  (EXP,ISO)
WIN 55212-2  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The homeodomain protein vax1 is required for axon guidance and major tract formation in the developing forebrain. Bertuzzi S, etal., Genes Dev 1999 Dec 1;13(23):3092-105.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. BIBF1120 (Vargatef) Inhibits Preretinal Neovascularization and Enhances Normal Vascularization in a Model of Vasoproliferative Retinopathy. Rivera JC, etal., Invest Ophthalmol Vis Sci. 2015 Dec;56(13):7897-907. doi: 10.1167/iovs.15-17146.
9. Key mechanisms underlying netrin-1 prevention of impaired spatial and object memory in Aß1-42 CA1-injected rats. Zamani E, etal., Clin Exp Pharmacol Physiol. 2018 Aug 1. doi: 10.1111/1440-1681.13020.
Additional References at PubMed
PMID:4116482   PMID:7604039   PMID:8543157   PMID:8565836   PMID:8889548   PMID:8978605   PMID:9092658   PMID:9126737   PMID:9226455   PMID:9331350   PMID:9362464   PMID:9389662  
PMID:9545534   PMID:9753685   PMID:9770356   PMID:10101124   PMID:10341242   PMID:10366627   PMID:10381568   PMID:10409504   PMID:10409510   PMID:10477289   PMID:10512203   PMID:10556054  
PMID:10559399   PMID:10595513   PMID:10654596   PMID:10683176   PMID:10704383   PMID:10908620   PMID:10922068   PMID:10964956   PMID:10964959   PMID:11038171   PMID:11044395   PMID:11157077  
PMID:11163266   PMID:11387206   PMID:11431694   PMID:11498051   PMID:11748138   PMID:11784868   PMID:11807023   PMID:12051827   PMID:12351186   PMID:12397112   PMID:12421703   PMID:12451134  
PMID:12466851   PMID:12477932   PMID:12520002   PMID:12636918   PMID:12642493   PMID:12654290   PMID:12679031   PMID:12736344   PMID:12756179   PMID:12787506   PMID:12798294   PMID:12799072  
PMID:12889066   PMID:14610273   PMID:14671310   PMID:14750959   PMID:15044550   PMID:15105372   PMID:15121176   PMID:15186740   PMID:15186747   PMID:15189358   PMID:15229182   PMID:15328018  
PMID:15342729   PMID:15363417   PMID:15447689   PMID:15494733   PMID:15520390   PMID:15557120   PMID:15765517   PMID:15840001   PMID:16176936   PMID:16244667   PMID:16267219   PMID:16280635  
PMID:16284245   PMID:16420441   PMID:16439476   PMID:16439477   PMID:16455951   PMID:16481423   PMID:16510500   PMID:16554470   PMID:16602821   PMID:16712836   PMID:16715082   PMID:16723533  
PMID:16829956   PMID:16854408   PMID:16854970   PMID:16917820   PMID:16928876   PMID:16988045   PMID:17086203   PMID:17151600   PMID:17360405   PMID:17397913   PMID:17450135   PMID:17493606  
PMID:17573818   PMID:17588941   PMID:17616930   PMID:17701984   PMID:17721516   PMID:17898206   PMID:17908930   PMID:17911046   PMID:18212043   PMID:18216145   PMID:18223200   PMID:18234954  
PMID:18353983   PMID:18425773   PMID:18455953   PMID:18469807   PMID:18479186   PMID:18585357   PMID:18692059   PMID:18701067   PMID:18757743   PMID:18771734   PMID:18796601   PMID:18799693  
PMID:18842897   PMID:18940235   PMID:18945908   PMID:18948420   PMID:19004851   PMID:19115401   PMID:19141671   PMID:19148186   PMID:19211685   PMID:19239004   PMID:19383784   PMID:19386270  
PMID:19409494   PMID:19554387   PMID:19721007   PMID:19774071   PMID:19812329   PMID:19850875   PMID:20004665   PMID:20016078   PMID:20036673   PMID:20159958   PMID:20231872   PMID:20569485  
PMID:20628609   PMID:20652952   PMID:20693423   PMID:20696379   PMID:20725507   PMID:20960561   PMID:21059867   PMID:21068056   PMID:21098235   PMID:21215373   PMID:21216843   PMID:21267068  
PMID:21273545   PMID:21508652   PMID:21545793   PMID:21625583   PMID:21658588   PMID:21673655   PMID:21743013   PMID:21813473   PMID:21873635   PMID:21994363   PMID:22000108   PMID:22046354  
PMID:22076636   PMID:22159717   PMID:22231519   PMID:22238077   PMID:22307612   PMID:22360971   PMID:22421044   PMID:22512716   PMID:22514301   PMID:22685302   PMID:22705977   PMID:22726835  
PMID:22748019   PMID:22782894   PMID:22806432   PMID:22915102   PMID:22915753   PMID:22998873   PMID:23041393   PMID:23056554   PMID:23161783   PMID:23195957   PMID:23223444   PMID:23226461  
PMID:23292680   PMID:23302812   PMID:23307742   PMID:23312517   PMID:23388207   PMID:23408164   PMID:23408169   PMID:23430612   PMID:23445618   PMID:23473031   PMID:23494735   PMID:23599441  
PMID:23623550   PMID:23636509   PMID:23720040   PMID:23824572   PMID:23831296   PMID:23971992   PMID:24010020   PMID:24014668   PMID:24174661   PMID:24369474   PMID:24400119   PMID:24449837  
PMID:24560577   PMID:24584118   PMID:24705356   PMID:24739528   PMID:24753163   PMID:24778312   PMID:24863066   PMID:24867253   PMID:24876346   PMID:24928309   PMID:24937433   PMID:24952961  
PMID:25033181   PMID:25056828   PMID:25149138   PMID:25336744   PMID:25366972   PMID:25417164   PMID:25433640   PMID:25456121   PMID:25483983   PMID:25530182   PMID:25561546   PMID:25656845  
PMID:25704602   PMID:25754961   PMID:25826604   PMID:25924621   PMID:25947198   PMID:25960414   PMID:26079645   PMID:26190161   PMID:26257176   PMID:26257608   PMID:26264903   PMID:26290247  
PMID:26395479   PMID:26397040   PMID:26490861   PMID:26509897   PMID:26573873   PMID:26633812   PMID:26633881   PMID:26687222   PMID:26749424   PMID:26783193   PMID:26858598   PMID:26859457  
PMID:27034160   PMID:27040640   PMID:27060954   PMID:27143755   PMID:27400127   PMID:27502509   PMID:27520508   PMID:27681594   PMID:27784329   PMID:27881869   PMID:28250456   PMID:28434801  
PMID:28439006   PMID:28445456   PMID:28483977   PMID:28560839   PMID:28780049   PMID:28851705   PMID:28931893   PMID:28986144   PMID:29031500   PMID:29059224   PMID:29121420   PMID:29305865  
PMID:29343636   PMID:29343638   PMID:29444422   PMID:29513653   PMID:29546593   PMID:29662125   PMID:29912395   PMID:30177526   PMID:30224412   PMID:30282026   PMID:30359296   PMID:30470704  
PMID:30470893   PMID:30479344   PMID:30576266   PMID:30661738   PMID:30661739   PMID:30770380   PMID:30770464   PMID:30796970   PMID:30872278   PMID:30902550   PMID:30905607   PMID:30952101  
PMID:31082736   PMID:31162046   PMID:31822662   PMID:31923977   PMID:31977180   PMID:32231305   PMID:32325033   PMID:32485133   PMID:32521266   PMID:32541007   PMID:32541009   PMID:32553804  
PMID:32561725   PMID:32562661   PMID:32586976   PMID:32701653   PMID:32701657   PMID:32853179   PMID:32929029   PMID:33053343   PMID:33097641   PMID:33195252   PMID:33351190   PMID:33386763  
PMID:33393489   PMID:33428890   PMID:33472083   PMID:33504783   PMID:33706013   PMID:33795231   PMID:33871356   PMID:33891683   PMID:33951080   PMID:34003106   PMID:34061311   PMID:34063230  
PMID:34147480   PMID:34169076   PMID:34289717   PMID:34321664   PMID:34321999   PMID:34344989   PMID:34722541   PMID:34738629   PMID:34954393   PMID:35019839   PMID:35210288   PMID:35246514  
PMID:35358475   PMID:35648640   PMID:35831953   PMID:35927240   PMID:36028316   PMID:36247475   PMID:36400204   PMID:36456775   PMID:36468399   PMID:36631632   PMID:36737666   PMID:36812256  
PMID:36927614   PMID:36960826   PMID:37037818   PMID:37037837   PMID:37044214   PMID:37149867   PMID:37153740   PMID:37524711   PMID:37707834   PMID:37818607   PMID:37823339   PMID:38345562  


Genomics

Comparative Map Data
Ntn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,100,190 - 68,277,652 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,100,190 - 68,291,649 (-)EnsemblGRCm39 Ensembl
GRCm381168,209,364 - 68,386,826 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,209,364 - 68,400,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,022,866 - 68,200,328 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,029,201 - 68,202,315 (-)NCBIMGSCv36mm8
Celera1175,146,897 - 75,324,142 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.45NCBI
NTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38179,003,087 - 9,244,000 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl179,021,510 - 9,244,000 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,924,827 - 9,147,317 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,865,584 - 9,088,042 (+)NCBINCBI36Build 36hg18NCBI36
Build 34178,865,583 - 9,084,078NCBI
Celera178,956,718 - 9,179,095 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef178,823,748 - 9,046,260 (+)NCBIHuRef
CHM1_1178,934,056 - 9,156,348 (+)NCBICHM1_1
T2T-CHM13v2.0178,910,268 - 9,150,998 (+)NCBIT2T-CHM13v2.0
Ntn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81053,398,852 - 53,597,595 (-)NCBIGRCr8
mRatBN7.21052,899,933 - 53,098,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1052,899,934 - 53,085,326 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1057,569,983 - 57,744,352 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01057,059,000 - 57,233,370 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01052,559,808 - 52,740,213 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01054,761,925 - 54,982,072 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1054,761,871 - 54,967,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01054,507,464 - 54,725,989 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41054,950,521 - 55,133,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11054,964,143 - 55,147,159 (-)NCBI
Celera1052,078,465 - 52,253,812 (-)NCBICelera
Cytogenetic Map10q24NCBI
Ntn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554677,794,735 - 7,991,695 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554677,795,175 - 7,991,597 (-)NCBIChiLan1.0ChiLan1.0
NTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21964,503,878 - 64,726,212 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11769,313,754 - 69,536,000 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01742,409,797 - 42,631,930 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11747,148,384 - 47,368,127 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1747,152,225 - 47,368,134 (-)Ensemblpanpan1.1panPan2
NTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1533,654,723 - 33,825,832 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl533,637,142 - 33,825,899 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,791,096 - 33,962,030 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,758,267 - 33,929,266 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,757,152 - 33,929,220 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,725,541 - 33,896,204 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,683,225 - 33,853,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,859,633 - 34,030,422 (+)NCBIUU_Cfam_GSD_1.0
Ntn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560248,672,178 - 48,849,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365952,146,366 - 2,323,399 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365952,146,371 - 2,323,346 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,089,472 - 54,292,193 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,089,444 - 54,292,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,822,597 - 57,056,391 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,359,682 - 8,603,231 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl168,379,129 - 8,603,223 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605912,748,497 - 13,022,123 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478611,526,050 - 11,703,258 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478611,508,643 - 11,707,060 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ntn1
5666 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3456
Count of miRNA genes:775
Interacting mature miRNAs:1022
Transcripts:ENSMUST00000021284, ENSMUST00000108674, ENSMUST00000135141
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116304211368500330Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse

Markers in Region
AI561871  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,209,640 - 68,209,741UniSTSGRCm38
MGSCv371168,023,142 - 68,023,243UniSTSGRCm37
Celera1175,147,173 - 75,147,273UniSTS
Cytogenetic Map11B3UniSTS
Whitehead/MRC_RH11885.79UniSTS
UniSTS:236621  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,209,629 - 68,209,880UniSTSGRCm38
MGSCv371168,023,131 - 68,023,382UniSTSGRCm37
Celera1175,147,162 - 75,147,412UniSTS
Cytogenetic Map11B3UniSTS
UniSTS:236622  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,211,896 - 68,212,218UniSTSGRCm38
MGSCv371168,025,398 - 68,025,720UniSTSGRCm37
Celera1175,149,428 - 75,149,750UniSTS
Cytogenetic Map11B3UniSTS
Ntn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS
cM Map11 UniSTS
Ntn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000021284   ⟹   ENSMUSP00000021284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,100,190 - 68,277,652 (-)Ensembl
GRCm38.p6 Ensembl1168,209,364 - 68,386,826 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108674   ⟹   ENSMUSP00000104314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,100,190 - 68,291,649 (-)Ensembl
GRCm38.p6 Ensembl1168,209,364 - 68,400,823 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135141   ⟹   ENSMUSP00000121193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1168,276,470 - 68,277,838 (-)Ensembl
GRCm38.p6 Ensembl1168,385,644 - 68,387,012 (-)Ensembl
RefSeq Acc Id: NM_008744   ⟹   NP_032770
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,100,190 - 68,277,652 (-)NCBI
GRCm381168,209,364 - 68,386,826 (-)ENTREZGENE
MGSCv371168,022,866 - 68,200,328 (-)RGD
Celera1175,146,897 - 75,324,142 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032770   ⟸   NM_008744
- Peptide Label: precursor
- UniProtKB: Q60832 (UniProtKB/Swiss-Prot),   B1ARR0 (UniProtKB/Swiss-Prot),   Q9QY50 (UniProtKB/Swiss-Prot),   O09118 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000121193   ⟸   ENSMUST00000135141
RefSeq Acc Id: ENSMUSP00000021284   ⟸   ENSMUST00000021284
RefSeq Acc Id: ENSMUSP00000104314   ⟸   ENSMUST00000108674
Protein Domains
Laminin EGF-like   Laminin N-terminal   NTR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O09118-F1-model_v2 AlphaFold O09118 1-604 view protein structure

Promoters
RGD ID:6821461
Promoter ID:MM_KWN:7979
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000120517,   NM_008744,   OTTMUST00000074431
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,199,956 - 68,200,456 (-)MPROMDB
RGD ID:8675102
Promoter ID:EPDNEW_M15581
Type:initiation region
Name:Ntn1_1
Description:Mus musculus netrin 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381168,386,811 - 68,386,871EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105088 AgrOrtholog
Ensembl Genes ENSMUSG00000020902 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021284 ENTREZGENE
  ENSMUST00000021284.4 UniProtKB/Swiss-Prot
  ENSMUST00000108674.9 UniProtKB/Swiss-Prot
  ENSMUST00000135141.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.120 UniProtKB/Swiss-Prot
  Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot
InterPro Galactose-bd-like_sf UniProtKB/Swiss-Prot
  Laminin_EGF UniProtKB/Swiss-Prot
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Netrin_domain UniProtKB/Swiss-Prot
  Netrin_module_non-TIMP UniProtKB/Swiss-Prot
  TIMP-like_OB-fold UniProtKB/Swiss-Prot
KEGG Report mmu:18208 UniProtKB/Swiss-Prot
MGD MGI:105088 ENTREZGENE
NCBI Gene 18208 ENTREZGENE
PANTHER NETRIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/Swiss-Prot
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NTR UniProtKB/Swiss-Prot
PhenoGen Ntn1 PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_LAM_1 UniProtKB/Swiss-Prot
  EGF_LAM_2 UniProtKB/Swiss-Prot
  LAMININ_NTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NTR UniProtKB/Swiss-Prot
SMART C345C UniProtKB/Swiss-Prot
  EGF_Lam UniProtKB/Swiss-Prot
  LamNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
  SSF49785 UniProtKB/Swiss-Prot
  SSF50242 UniProtKB/Swiss-Prot
UniProt B0QZL0_MOUSE UniProtKB/TrEMBL
  B1ARR0 ENTREZGENE
  NET1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q60832 ENTREZGENE
  Q9QY50 ENTREZGENE
UniProt Secondary B1ARR0 UniProtKB/Swiss-Prot
  Q60832 UniProtKB/Swiss-Prot
  Q9QY50 UniProtKB/Swiss-Prot