Ntn1 (netrin 1) - Rat Genome Database
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Gene: Ntn1 (netrin 1) Mus musculus
Analyze
Symbol: Ntn1
Name: netrin 1
RGD ID: 735502
MGI Page MGI
Description: Predicted to have extracellular matrix structural constituent. Involved in several processes, including animal organ morphogenesis; generation of neurons; and regulation of synapse assembly. Localizes to basement membrane and cytoplasm. Is expressed in several structures, including alimentary system; central nervous system; integumental system; lung; and sensory organ. Human ortholog(s) of this gene implicated in congenital mirror movement disorder. Orthologous to human NTN1 (netrin 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI561871; BC019633; Netr; netrin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,100,190 - 68,277,652 (-)NCBIGRCm39mm39
GRCm381168,209,364 - 68,386,826 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,209,364 - 68,400,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,022,866 - 68,200,328 (-)NCBIGRCm37mm9NCBIm37
MGSCv361168,029,201 - 68,202,315 (-)NCBImm8
Celera1175,146,897 - 75,324,142 (-)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:4116482   PMID:7604039   PMID:8543157   PMID:8565836   PMID:8889548   PMID:8978605   PMID:9092658   PMID:9126737   PMID:9226455   PMID:9331350   PMID:9362464   PMID:9389662  
PMID:9545534   PMID:9753685   PMID:9770356   PMID:10101124   PMID:10341242   PMID:10366627   PMID:10381568   PMID:10409504   PMID:10409510   PMID:10477289   PMID:10512203   PMID:10556054  
PMID:10559399   PMID:10595513   PMID:10654596   PMID:10683176   PMID:10704383   PMID:10908620   PMID:10922068   PMID:10964956   PMID:10964959   PMID:11038171   PMID:11044395   PMID:11157077  
PMID:11163266   PMID:11387206   PMID:11431694   PMID:11498051   PMID:11748138   PMID:11784868   PMID:11807023   PMID:12051827   PMID:12351186   PMID:12397112   PMID:12421703   PMID:12451134  
PMID:12466851   PMID:12477932   PMID:12520002   PMID:12636918   PMID:12642493   PMID:12654290   PMID:12679031   PMID:12736344   PMID:12756179   PMID:12787506   PMID:12798294   PMID:12799072  
PMID:12889066   PMID:14610273   PMID:14671310   PMID:14750959   PMID:15044550   PMID:15105372   PMID:15121176   PMID:15186740   PMID:15186747   PMID:15189358   PMID:15229182   PMID:15328018  
PMID:15342729   PMID:15363417   PMID:15447689   PMID:15494733   PMID:15520390   PMID:15557120   PMID:15765517   PMID:15840001   PMID:16176936   PMID:16244667   PMID:16267219   PMID:16280635  
PMID:16284245   PMID:16420441   PMID:16439476   PMID:16439477   PMID:16455951   PMID:16481423   PMID:16510500   PMID:16554470   PMID:16602821   PMID:16712836   PMID:16715082   PMID:16723533  
PMID:16829956   PMID:16854408   PMID:16854970   PMID:16917820   PMID:16928876   PMID:16988045   PMID:17086203   PMID:17151600   PMID:17360405   PMID:17397913   PMID:17450135   PMID:17493606  
PMID:17573818   PMID:17588941   PMID:17616930   PMID:17701984   PMID:17721516   PMID:17898206   PMID:17908930   PMID:17911046   PMID:18212043   PMID:18216145   PMID:18223200   PMID:18234954  
PMID:18353983   PMID:18425773   PMID:18455953   PMID:18469807   PMID:18479186   PMID:18585357   PMID:18692059   PMID:18701067   PMID:18757743   PMID:18771734   PMID:18796601   PMID:18799693  
PMID:18842897   PMID:18940235   PMID:18945908   PMID:18948420   PMID:19004851   PMID:19115401   PMID:19141671   PMID:19148186   PMID:19211685   PMID:19239004   PMID:19383784   PMID:19386270  
PMID:19409494   PMID:19554387   PMID:19721007   PMID:19774071   PMID:19812329   PMID:19850875   PMID:20004665   PMID:20016078   PMID:20036673   PMID:20159958   PMID:20231872   PMID:20569485  
PMID:20628609   PMID:20652952   PMID:20693423   PMID:20696379   PMID:20960561   PMID:21059867   PMID:21068056   PMID:21098235   PMID:21215373   PMID:21216843   PMID:21267068   PMID:21273545  
PMID:21508652   PMID:21545793   PMID:21625583   PMID:21658588   PMID:21673655   PMID:21743013   PMID:21813473   PMID:21873635   PMID:21994363   PMID:22000108   PMID:22046354   PMID:22076636  
PMID:22159717   PMID:22231519   PMID:22238077   PMID:22307612   PMID:22360971   PMID:22421044   PMID:22512716   PMID:22514301   PMID:22685302   PMID:22705977   PMID:22726835   PMID:22748019  
PMID:22782894   PMID:22806432   PMID:22915102   PMID:22915753   PMID:22998873   PMID:23041393   PMID:23056554   PMID:23161783   PMID:23195957   PMID:23223444   PMID:23226461   PMID:23292680  
PMID:23302812   PMID:23307742   PMID:23312517   PMID:23388207   PMID:23408164   PMID:23408169   PMID:23430612   PMID:23445618   PMID:23473031   PMID:23599441   PMID:23623550   PMID:23636509  
PMID:23720040   PMID:23824572   PMID:23831296   PMID:23971992   PMID:24010020   PMID:24014668   PMID:24174661   PMID:24369474   PMID:24400119   PMID:24449837   PMID:24560577   PMID:24584118  
PMID:24705356   PMID:24739528   PMID:24753163   PMID:24778312   PMID:24863066   PMID:24867253   PMID:24876346   PMID:24928309   PMID:24937433   PMID:24952961   PMID:25033181   PMID:25056828  
PMID:25149138   PMID:25336744   PMID:25417164   PMID:25433640   PMID:25456121   PMID:25483983   PMID:25530182   PMID:25561546   PMID:25656845   PMID:25704602   PMID:25754961   PMID:25826604  
PMID:25924621   PMID:25947198   PMID:25960414   PMID:26079645   PMID:26190161   PMID:26257176   PMID:26264903   PMID:26290247   PMID:26395479   PMID:26397040   PMID:26490861   PMID:26509897  
PMID:26573873   PMID:26633812   PMID:26633881   PMID:26687222   PMID:26749424   PMID:26783193   PMID:26858598   PMID:26859457   PMID:27034160   PMID:27040640   PMID:27060954   PMID:27143755  
PMID:27400127   PMID:27502509   PMID:27520508   PMID:27681594   PMID:27784329   PMID:27881869   PMID:28250456   PMID:28434801   PMID:28439006   PMID:28445456   PMID:28483977   PMID:28560839  
PMID:28780049   PMID:28851705   PMID:28931893   PMID:28986144   PMID:29031500   PMID:29059224   PMID:29121420   PMID:29305865   PMID:29343636   PMID:29343638   PMID:29444422   PMID:29513653  
PMID:29546593   PMID:29662125   PMID:30177526   PMID:30224412   PMID:30282026   PMID:30359296   PMID:30470704   PMID:30479344   PMID:30576266   PMID:30661738   PMID:30661739   PMID:30770380  
PMID:30770464   PMID:30796970   PMID:30872278   PMID:30902550   PMID:30905607   PMID:30952101   PMID:31162046   PMID:31822662   PMID:31923977   PMID:32231305   PMID:32325033   PMID:32541007  
PMID:32541009   PMID:32561725   PMID:32562661   PMID:32586976   PMID:32853179   PMID:32929029   PMID:33393489   PMID:33504783  


Genomics

Comparative Map Data
Ntn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,100,190 - 68,277,652 (-)NCBIGRCm39mm39
GRCm381168,209,364 - 68,386,826 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,209,364 - 68,400,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,022,866 - 68,200,328 (-)NCBIGRCm37mm9NCBIm37
MGSCv361168,029,201 - 68,202,315 (-)NCBImm8
Celera1175,146,897 - 75,324,142 (-)NCBICelera
Cytogenetic Map11B3NCBI
NTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl179,021,510 - 9,244,000 (+)EnsemblGRCh38hg38GRCh38
GRCh38179,021,510 - 9,244,000 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37178,924,827 - 9,147,317 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37178,924,859 - 9,147,317 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,865,584 - 9,088,042 (+)NCBINCBI36hg18NCBI36
Build 34178,865,583 - 9,084,078NCBI
Celera178,956,718 - 9,179,095 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef178,823,748 - 9,046,260 (+)NCBIHuRef
CHM1_1178,934,056 - 9,156,348 (+)NCBICHM1_1
Ntn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21052,899,933 - 53,098,591 (-)NCBI
Rnor_6.0 Ensembl1054,761,871 - 54,967,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01054,761,925 - 54,982,072 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01054,507,464 - 54,725,989 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41054,950,521 - 55,133,536 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11054,964,143 - 55,147,159 (-)NCBI
Celera1052,078,465 - 52,253,812 (-)NCBICelera
Cytogenetic Map10q24NCBI
Ntn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554677,794,735 - 7,991,695 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554677,795,175 - 7,991,597 (-)NCBIChiLan1.0ChiLan1.0
NTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11747,148,384 - 47,368,127 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1747,152,225 - 47,368,134 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01742,409,797 - 42,631,930 (-)NCBIMhudiblu_PPA_v0panPan3
NTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl533,637,142 - 33,825,899 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1533,654,723 - 33,825,832 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ntn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365952,146,371 - 2,323,346 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,089,472 - 54,308,355 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,089,444 - 54,292,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,822,597 - 57,056,391 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NTN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,359,682 - 8,603,231 (+)NCBI
ChlSab1.1 Ensembl168,379,129 - 8,603,223 (+)Ensembl
Ntn1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478611,508,643 - 11,707,060 (+)NCBI

Position Markers
AI561871  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,209,640 - 68,209,741UniSTSGRCm38
MGSCv371168,023,142 - 68,023,243UniSTSGRCm37
Celera1175,147,173 - 75,147,273UniSTS
Cytogenetic Map11B3UniSTS
Whitehead/MRC_RH11885.79UniSTS
UniSTS:236621  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,209,629 - 68,209,880UniSTSGRCm38
MGSCv371168,023,131 - 68,023,382UniSTSGRCm37
Celera1175,147,162 - 75,147,412UniSTS
Cytogenetic Map11B3UniSTS
UniSTS:236622  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,211,896 - 68,212,218UniSTSGRCm38
MGSCv371168,025,398 - 68,025,720UniSTSGRCm37
Celera1175,149,428 - 75,149,750UniSTS
Cytogenetic Map11B3UniSTS
Ntn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS
cM Map11 UniSTS
Ntn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116315128768609504Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3456
Count of miRNA genes:775
Interacting mature miRNAs:1022
Transcripts:ENSMUST00000021284, ENSMUST00000108674, ENSMUST00000135141
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000021284   ⟹   ENSMUSP00000021284
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,209,364 - 68,386,826 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108674   ⟹   ENSMUSP00000104314
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,209,364 - 68,400,823 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135141   ⟹   ENSMUSP00000121193
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,385,644 - 68,387,012 (-)Ensembl
RefSeq Acc Id: NM_008744   ⟹   NP_032770
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,100,190 - 68,277,652 (-)NCBI
GRCm381168,209,364 - 68,386,826 (-)ENTREZGENE
MGSCv371168,022,866 - 68,200,328 (-)RGD
Celera1175,146,897 - 75,324,142 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032770   ⟸   NM_008744
- Peptide Label: precursor
- UniProtKB: O09118 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000121193   ⟸   ENSMUST00000135141
RefSeq Acc Id: ENSMUSP00000021284   ⟸   ENSMUST00000021284
RefSeq Acc Id: ENSMUSP00000104314   ⟸   ENSMUST00000108674
Protein Domains
Laminin EGF-like   Laminin N-terminal   NTR

Promoters
RGD ID:6821461
Promoter ID:MM_KWN:7979
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000120517,   NM_008744,   OTTMUST00000074431
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,199,956 - 68,200,456 (-)MPROMDB
RGD ID:8675102
Promoter ID:EPDNEW_M15581
Type:initiation region
Name:Ntn1_1
Description:Mus musculus netrin 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381168,386,811 - 68,386,871EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105088 AgrOrtholog
Ensembl Genes ENSMUSG00000020902 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000021284 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104314 UniProtKB/Swiss-Prot
  ENSMUSP00000121193 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021284 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108674 UniProtKB/Swiss-Prot
  ENSMUST00000135141 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.120 UniProtKB/Swiss-Prot
  2.60.120.1490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Galactose-bd-like_sf UniProtKB/Swiss-Prot
  Laminin_EGF UniProtKB/Swiss-Prot
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Netrin_domain UniProtKB/Swiss-Prot
  Netrin_module_non-TIMP UniProtKB/Swiss-Prot
  TIMP-like_OB-fold UniProtKB/Swiss-Prot
KEGG Report mmu:18208 UniProtKB/Swiss-Prot
MGD MGI:105088 ENTREZGENE
NCBI Gene 18208 ENTREZGENE
Pfam Laminin_EGF UniProtKB/Swiss-Prot
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NTR UniProtKB/Swiss-Prot
PhenoGen Ntn1 PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_LAM_1 UniProtKB/Swiss-Prot
  EGF_LAM_2 UniProtKB/Swiss-Prot
  LAMININ_NTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NTR UniProtKB/Swiss-Prot
SMART C345C UniProtKB/Swiss-Prot
  EGF_Lam UniProtKB/Swiss-Prot
  LamNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/Swiss-Prot
  SSF50242 UniProtKB/Swiss-Prot
UniProt B0QZL0_MOUSE UniProtKB/TrEMBL
  NET1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B1ARR0 UniProtKB/Swiss-Prot
  Q60832 UniProtKB/Swiss-Prot
  Q9QY50 UniProtKB/Swiss-Prot