Atp2b1 (ATPase, Ca++ transporting, plasma membrane 1) - Rat Genome Database
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Gene: Atp2b1 (ATPase, Ca++ transporting, plasma membrane 1) Mus musculus
Analyze
Symbol: Atp2b1
Name: ATPase, Ca++ transporting, plasma membrane 1
RGD ID: 735441
MGI Page MGI
Description: Predicted to have ATPase activity; PDZ domain binding activity; and calcium transmembrane transporter activity, phosphorylative mechanism. Involved in several processes, including negative regulation of cytosolic calcium ion concentration; positive regulation of bone mineralization; and regulation of vascular associated smooth muscle contraction. Localizes to basolateral plasma membrane and immunological synapse. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Orthologous to human ATP2B1 (ATPase plasma membrane Ca2+ transporting 1); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2810442I22Rik; E130111D10Rik; plasma membrane calcium ATPase; plasma membrane calcium ATPase 1; plasma membrane calcium pump; plasma membrane calcium-transporting ATPase 1; PMC; Pmca1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391098,750,243 - 98,862,005 (+)NCBIGRCm39mm39
GRCm381098,914,630 - 99,026,143 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1098,914,406 - 99,026,143 (+)EnsemblGRCm38mm10GRCm38
MGSCv371098,377,786 - 98,488,777 (+)NCBIGRCm37mm9NCBIm37
MGSCv361098,344,858 - 98,453,480 (+)NCBImm8
Celera10100,886,627 - 100,998,171 (+)NCBICelera
Cytogenetic Map10C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,6-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (ISO)
4-tert-Octylphenol  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
aminoguanidine  (ISO)
antimony(0)  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bucladesine  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calciol  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
chromium atom  (ISO)
chromium(6+)  (EXP)
cisplatin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP,ISO)
cyclosporin A  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
disulfiram  (ISO)
diuron  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
ethanol  (EXP,ISO)
gentamycin  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
irinotecan  (ISO)
isoflavones  (ISO)
lycopene  (EXP)
medroxyprogesterone acetate  (ISO)
melphalan  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (ISO)
oxaliplatin  (ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
serpentine asbestos  (ISO)
sodium arsenate  (EXP)
Soman  (ISO)
streptozocin  (EXP)
succimer  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vinclozolin  (ISO)
zinc oxide  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal auditory brainstem response  (IEA)
abnormal calcium ion homeostasis  (IAGP)
abnormal exploration in a new environment  (IAGP)
abnormal gait  (IAGP)
abnormal muscle electrophysiology  (IAGP)
abnormal neuromuscular synapse morphology  (IAGP)
abnormal sciatic nerve morphology  (IAGP)
abnormal social investigation  (IAGP)
abnormal urine phosphate level  (IAGP)
abnormal vibrissa morphology  (IEA)
absent primitive endoderm  (IEA)
absent trophectoderm  (IEA)
absent vibrissae  (IEA)
astrocytosis  (IAGP)
decreased anxiety-related response  (IAGP)
decreased birth body size  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral density  (IAGP)
decreased bone mineral density of femur  (IAGP)
decreased bone mineralization  (IAGP)
decreased intestinal calcium absorption  (IAGP)
decreased urine calcium level  (IAGP)
decreased vasoconstriction  (IAGP)
decreased vertical activity  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IEA)
gliosis  (IAGP)
head tossing  (IAGP)
hindlimb paralysis  (IAGP)
impaired coordination  (IAGP)
impaired righting response  (IAGP)
increased food intake  (IAGP)
increased grooming behavior  (IAGP)
increased mean systemic arterial blood pressure  (IAGP)
increased stereotypic behavior  (IAGP)
increased systemic arterial diastolic blood pressure  (IAGP)
increased systemic arterial systolic blood pressure  (IAGP)
increased vasoconstriction  (IAGP)
increased vertical stereotypic behavior  (IAGP)
jerky movement  (IAGP)
limb grasping  (IAGP)
low sweet preference  (IAGP)
muscle fasciculation  (IAGP)
neuronal cytoplasmic inclusions  (IAGP)
paralysis  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
short stride length  (IAGP)
tremors  (IAGP)
weakness  (IAGP)
weight loss  (IAGP)
References

Additional References at PubMed
PMID:7840630   PMID:8889548   PMID:10349636   PMID:10362770   PMID:10434059   PMID:10512203   PMID:10577388   PMID:10951186   PMID:11042159   PMID:11076861   PMID:11387227   PMID:11544199  
PMID:12060584   PMID:12209837   PMID:12477932   PMID:12520002   PMID:12660151   PMID:12767889   PMID:12904583   PMID:14681479   PMID:14691545   PMID:15133509   PMID:15178683   PMID:15336967  
PMID:15741244   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16182275   PMID:16291816   PMID:16352659   PMID:16512683   PMID:16735509   PMID:16956963   PMID:16959763   PMID:17938178  
PMID:17967808   PMID:18258656   PMID:18799693   PMID:19075228   PMID:19233278   PMID:20133672   PMID:20717922   PMID:21677750   PMID:21873635   PMID:22183401   PMID:22311909   PMID:23266958  
PMID:23413890   PMID:23460639   PMID:23666421   PMID:24194600   PMID:24805951   PMID:25044020   PMID:25737280   PMID:26392310   PMID:27329763   PMID:27626380   PMID:28378742   PMID:28611155  
PMID:28795531   PMID:28827723   PMID:29023784   PMID:29046519   PMID:29950683   PMID:30562941   PMID:30786075   PMID:32325033   PMID:32581705  


Genomics

Comparative Map Data
Atp2b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391098,750,243 - 98,862,005 (+)NCBIGRCm39mm39
GRCm381098,914,630 - 99,026,143 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1098,914,406 - 99,026,143 (+)EnsemblGRCm38mm10GRCm38
MGSCv371098,377,786 - 98,488,777 (+)NCBIGRCm37mm9NCBIm37
MGSCv361098,344,858 - 98,453,480 (+)NCBImm8
Celera10100,886,627 - 100,998,171 (+)NCBICelera
Cytogenetic Map10C3NCBI
ATP2B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1289,588,049 - 89,709,300 (-)EnsemblGRCh38hg38GRCh38
GRCh381289,588,049 - 89,709,366 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371289,981,826 - 90,103,130 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361288,505,957 - 88,573,975 (-)NCBINCBI36hg18NCBI36
Build 341288,484,295 - 88,552,312NCBI
Celera1289,653,490 - 89,721,509 (-)NCBI
Cytogenetic Map12q21.33NCBI
HuRef1287,047,680 - 87,115,698 (-)NCBIHuRef
CHM1_11289,946,885 - 90,014,891 (-)NCBICHM1_1
Atp2b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0741,114,606 - 41,223,138 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl741,114,697 - 41,220,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0741,153,926 - 41,262,537 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4736,493,661 - 36,600,280 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1736,513,931 - 36,620,551 (+)NCBI
Celera730,753,051 - 30,859,194 (+)NCBICelera
Cytogenetic Map7q13NCBI
Atp2b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540526,872,379 - 26,932,703 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540526,872,379 - 26,932,270 (-)NCBIChiLan1.0ChiLan1.0
ATP2B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11290,427,560 - 90,495,320 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1290,427,560 - 90,495,320 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01287,107,900 - 87,229,514 (-)NCBIMhudiblu_PPA_v0panPan3
ATP2B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1530,547,015 - 30,616,429 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11530,547,009 - 30,674,094 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Atp2b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365076,525,302 - 6,631,003 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl592,935,694 - 93,061,446 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1592,935,688 - 93,061,406 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2597,597,062 - 97,709,794 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2B1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11184,985,957 - 85,053,923 (-)NCBI
ChlSab1.1 Ensembl1184,989,169 - 85,103,957 (-)Ensembl
Atp2b1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475016,990,288 - 17,103,279 (+)NCBI

Position Markers
Atp2b1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C3UniSTS
cM Map1050.97UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106565510499655287Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106565510499655287Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106565510499655287Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078545406112545406Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082242550116242550Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082473556116473795Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082473556116473795Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082473556116473795Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082473556116473795Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082473556116473795Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082473556116473795Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082556941116557090Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83181141117181274Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084243786122205623Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84243786122205623Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84243786122205623Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084243786122205623Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084243786122205623Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085619118118661448Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086877747120877895Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1087073224121073368Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1087073224121073368Mouse
1357831Igf1sl2_mIGF-1 serum levels 2 (mouse)Not determined1087858265100100416Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088252393122252530Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined89000595123000595Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1090091790124091893Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090671039125739363Mouse
13208554Lgth11_mbody length 11 (mouse)1091000000121000000Mouse
1302162Ednrbm1_mendothelin receptor type B modifier 1 (mouse)Not determined1092291521103877895Mouse
12910821Ogrq4_moverall growth rate QTL 4 (mouse)1092333194107484128Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92894079111732414Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097381196130694993Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097381196130694993Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397381196130694993Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097381196130694993Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097700000130694993Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97922739130694993Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:649
Count of miRNA genes:439
Interacting mature miRNAs:494
Transcripts:ENSMUST00000020107
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF162783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF357352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI892140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI732378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF750345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ128577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ321142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK393435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK624413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN691756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV559947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U16707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020107   ⟹   ENSMUSP00000020107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1098,915,152 - 99,026,143 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218312
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1099,014,893 - 99,017,109 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218419
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1099,019,037 - 99,022,933 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218695
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1098,986,131 - 98,988,464 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218948   ⟹   ENSMUSP00000151441
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1099,014,969 - 99,023,823 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219090   ⟹   ENSMUSP00000151934
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1099,001,442 - 99,011,470 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219557   ⟹   ENSMUSP00000151791
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1098,914,406 - 98,987,122 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219624   ⟹   ENSMUSP00000151598
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1098,915,472 - 98,996,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220104   ⟹   ENSMUSP00000151572
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1099,015,046 - 99,023,569 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220124   ⟹   ENSMUSP00000151970
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1099,014,943 - 99,023,455 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220358
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1098,990,880 - 98,994,567 (+)Ensembl
RefSeq Acc Id: NM_001359506   ⟹   NP_001346435
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391098,750,504 - 98,862,005 (+)NCBI
GRCm381098,914,642 - 99,026,143 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359507   ⟹   NP_001346436
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391098,751,014 - 98,862,005 (+)NCBI
GRCm381098,915,152 - 99,026,143 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359508   ⟹   NP_001346437
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391098,750,504 - 98,862,005 (+)NCBI
GRCm381098,914,642 - 99,026,143 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359509   ⟹   NP_001346438
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391098,750,504 - 98,862,005 (+)NCBI
GRCm381098,914,642 - 99,026,143 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026482   ⟹   NP_080758
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391098,751,014 - 98,862,005 (+)NCBI
GRCm381098,915,152 - 99,026,143 (+)NCBI
MGSCv371098,377,786 - 98,488,777 (+)RGD
Celera10100,886,627 - 100,998,171 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011243548   ⟹   XP_011241850
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391098,750,686 - 98,861,449 (+)NCBI
GRCm381098,915,025 - 99,025,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243549   ⟹   XP_011241851
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391098,750,243 - 98,862,005 (+)NCBI
GRCm381098,914,630 - 99,025,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245244   ⟹   XP_030101104
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391098,776,302 - 98,861,449 (+)NCBI
GRCm381098,940,440 - 99,025,587 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080758   ⟸   NM_026482
- Peptide Label: isoform 2
- UniProtKB: G5E829 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011241851   ⟸   XM_011243549
- Peptide Label: isoform X2
- UniProtKB: G5E829 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011241850   ⟸   XM_011243548
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001346437   ⟸   NM_001359508
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001346438   ⟸   NM_001359509
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001346435   ⟸   NM_001359506
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001346436   ⟸   NM_001359507
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030101104   ⟸   XM_030245244
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000151441   ⟸   ENSMUST00000218948
RefSeq Acc Id: ENSMUSP00000020107   ⟸   ENSMUST00000020107
RefSeq Acc Id: ENSMUSP00000151934   ⟸   ENSMUST00000219090
RefSeq Acc Id: ENSMUSP00000151598   ⟸   ENSMUST00000219624
RefSeq Acc Id: ENSMUSP00000151791   ⟸   ENSMUST00000219557
RefSeq Acc Id: ENSMUSP00000151970   ⟸   ENSMUST00000220124
RefSeq Acc Id: ENSMUSP00000151572   ⟸   ENSMUST00000220104
Promoters
RGD ID:6819021
Promoter ID:MM_KWN:5465
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000105284,   NM_026482
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361098,377,386 - 98,377,886 (+)MPROMDB
RGD ID:8673154
Promoter ID:EPDNEW_M14608
Type:initiation region
Name:Atp2b1_1
Description:Mus musculus ATPase, Ca++ transporting, plasma membrane 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14609  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381098,915,152 - 98,915,212EPDNEW
RGD ID:8673156
Promoter ID:EPDNEW_M14609
Type:single initiation site
Name:Atp2b1_2
Description:Mus musculus ATPase, Ca++ transporting, plasma membrane 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14608  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381098,945,683 - 98,945,743EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104653 AgrOrtholog
Ensembl Genes ENSMUSG00000019943 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000020107 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000151441 UniProtKB/TrEMBL
  ENSMUSP00000151572 UniProtKB/TrEMBL
  ENSMUSP00000151598 UniProtKB/TrEMBL
  ENSMUSP00000151791 UniProtKB/TrEMBL
  ENSMUSP00000151934 UniProtKB/TrEMBL
  ENSMUSP00000151970 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020107 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000218948 UniProtKB/TrEMBL
  ENSMUST00000219090 UniProtKB/TrEMBL
  ENSMUST00000219557 UniProtKB/TrEMBL
  ENSMUST00000219624 UniProtKB/TrEMBL
  ENSMUST00000220104 UniProtKB/TrEMBL
  ENSMUST00000220124 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATP2B1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP_Ca_trans_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_Ca-transp_plasma UniProtKB/Swiss-Prot
  ATPase_P-typ_cation-transptr_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  ATPase_P-typ_P_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_transp_P_typ_ATPase UniProtKB/Swiss-Prot
  HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-type_ATPase_IIB UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
KEGG Report mmu:67972 UniProtKB/Swiss-Prot
MGD MGI:104653 ENTREZGENE
NCBI Gene 67972 ENTREZGENE
PANTHER PTHR24093:SF245 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ATP_Ca_trans_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp2b1 PhenoGen
PROSITE ATPASE_E1_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81653 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81665 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs ATPase-IIB_Ca UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.166944 ENTREZGENE
  Mm.471912 ENTREZGENE
UniProt A0A1W2P6X7_MOUSE UniProtKB/TrEMBL
  A0A1W2P772_MOUSE UniProtKB/TrEMBL
  A0A1W2P7C7_MOUSE UniProtKB/TrEMBL
  A0A1W2P7R3_MOUSE UniProtKB/TrEMBL
  A0A1W2P867_MOUSE UniProtKB/TrEMBL
  A0A1W2P882_MOUSE UniProtKB/TrEMBL
  AT2B1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q05CJ5_MOUSE UniProtKB/TrEMBL
  Q3TC38_MOUSE UniProtKB/TrEMBL
  Q3TDJ2_MOUSE UniProtKB/TrEMBL
  Q3TSK3_MOUSE UniProtKB/TrEMBL
  Q6PG79_MOUSE UniProtKB/TrEMBL
  Q8K314_MOUSE UniProtKB/TrEMBL