Cish (cytokine inducible SH2-containing protein) - Rat Genome Database
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Gene: Cish (cytokine inducible SH2-containing protein) Mus musculus
Analyze
Symbol: Cish
Name: cytokine inducible SH2-containing protein
RGD ID: 735427
MGI Page MGI
Description: Is expressed in liver; retina; and thymus primordium. Human ortholog(s) of this gene implicated in malaria and tuberculosis. Orthologous to human CISH (cytokine inducible SH2 containing protein); PARTICIPATES IN granulocyte-macrophage colony-stimulating factor signaling pathway; interleukin-2 signaling pathway; interleukin-3 signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI385595; C; CI; Cis; CIS-1; CIS1; cytokine-inducible SH2 protein; cytokine-inducible SH2-containing protein; F17; F23; SOCS; suppressor of cytokine signaling
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,173,858 - 107,179,983 (+)NCBIGRCm39mm39
GRCm39 Ensembl9107,173,225 - 107,179,983 (+)Ensembl
GRCm389107,296,659 - 107,302,784 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,296,026 - 107,302,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,199,020 - 107,204,292 (+)NCBIGRCm37mm9NCBIm37
MGSCv369107,154,790 - 107,160,062 (+)NCBImm8
Celera9106,902,900 - 106,908,144 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (EXP)
2-nitrotoluene  (EXP)
3-methylcholanthrene  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxynon-2-enal  (EXP)
4-nitrotoluene  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (ISO)
andrographolide  (EXP)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzo[ghi]perylene  (EXP)
benzoates  (ISO)
beta-naphthoflavone  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (ISO)
cannabidiol  (EXP)
carbon nanotube  (EXP)
chromium(6+)  (EXP)
chrysene  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cycloheximide  (EXP)
cyclosporin A  (EXP)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (EXP)
dibenz[a,h]anthracene  (EXP)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (EXP)
eugenol  (EXP)
fenofibrate  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
furan  (ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (EXP,ISO)
glycidol  (ISO)
hexachlorobenzene  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
manganese(II) chloride  (ISO)
melatonin  (EXP)
metformin  (ISO)
methotrexate  (ISO)
methylmercury(1+)  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methylformamide  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (EXP)
orphenadrine  (ISO)
oxazepam  (EXP)
paracetamol  (EXP)
PCB138  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
progesterone  (ISO)
raloxifene  (EXP)
rotenone  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
Soman  (ISO)
stattic  (ISO)
sulpiride  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
tetraphene  (EXP)
trichostatin A  (EXP)
triclosan  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:7796808   PMID:9344848   PMID:9465889   PMID:9844915   PMID:10349636   PMID:10374907   PMID:10454585   PMID:10490101   PMID:10867663   PMID:10880228   PMID:10922068   PMID:11042159  
PMID:11076861   PMID:11217851   PMID:11274764   PMID:11487633   PMID:11781573   PMID:11862405   PMID:12089360   PMID:12396724   PMID:12441334   PMID:12477932   PMID:12519742   PMID:12618484  
PMID:14627821   PMID:14681479   PMID:15489334   PMID:15644415   PMID:15652752   PMID:15899943   PMID:16141072   PMID:16141073   PMID:16684815   PMID:16961462   PMID:17666591   PMID:18420585  
PMID:18508766   PMID:18799693   PMID:19385048   PMID:21267068   PMID:21514445   PMID:21677750   PMID:21873635   PMID:22002016   PMID:23727894   PMID:23949579   PMID:24210661   PMID:26202070  
PMID:26527801   PMID:27213690   PMID:27694478   PMID:28038963   PMID:29050767   PMID:29361558   PMID:29593227   PMID:31079418   PMID:31875887   PMID:32097462  


Genomics

Comparative Map Data
Cish
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,173,858 - 107,179,983 (+)NCBIGRCm39mm39
GRCm39 Ensembl9107,173,225 - 107,179,983 (+)Ensembl
GRCm389107,296,659 - 107,302,784 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,296,026 - 107,302,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,199,020 - 107,204,292 (+)NCBIGRCm37mm9NCBIm37
MGSCv369107,154,790 - 107,160,062 (+)NCBImm8
Celera9106,902,900 - 106,908,144 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.99NCBI
CISH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl350,606,490 - 50,611,831 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl350,606,489 - 50,611,774 (-)EnsemblGRCh38hg38GRCh38
GRCh38350,606,454 - 50,611,774 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37350,643,920 - 50,649,205 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,618,924 - 50,624,207 (-)NCBINCBI36hg18NCBI36
Build 34350,618,929 - 50,624,207NCBI
Celera350,616,686 - 50,622,064 (-)NCBI
Cytogenetic Map3p21.2NCBI
HuRef350,699,815 - 50,705,193 (-)NCBIHuRef
CHM1_1350,596,124 - 50,601,502 (-)NCBICHM1_1
Cish
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28107,972,306 - 107,977,254 (+)NCBI
Rnor_6.0 Ensembl8116,054,465 - 116,060,723 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08116,054,547 - 116,059,494 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08115,411,027 - 115,415,974 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,541,034 - 112,545,982 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,560,606 - 112,564,500 (+)NCBI
Celera8107,282,095 - 107,287,043 (+)NCBICelera
Cytogenetic Map8q32NCBI
Cish
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,378,088 - 2,386,000 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,380,380 - 2,386,000 (-)NCBIChiLan1.0ChiLan1.0
CISH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1351,769,194 - 51,774,548 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,769,194 - 51,774,548 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0350,531,870 - 50,537,319 (-)NCBIMhudiblu_PPA_v0panPan3
CISH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2038,762,378 - 38,766,620 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12038,762,239 - 38,767,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cish
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365292,116,786 - 2,124,469 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CISH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1333,084,873 - 33,090,615 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11333,086,280 - 33,090,540 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21336,354,834 - 36,358,941 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CISH
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,993,212 - 11,998,625 (-)NCBI
ChlSab1.1 Ensembl2211,993,242 - 11,995,375 (-)Ensembl
Cish
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247304,434,817 - 4,440,269 (-)NCBI

Position Markers
D31943  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,301,082 - 107,301,235UniSTSGRCm38
MGSCv379107,203,413 - 107,203,566UniSTSGRCm37
Celera9106,907,265 - 106,907,418UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
Whitehead_YAC9 UniSTS
PMC156147P13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,296,705 - 107,296,789UniSTSGRCm38
MGSCv379107,199,036 - 107,199,120UniSTSGRCm37
Celera9106,902,916 - 106,903,000UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
PMC156147P14  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,296,452 - 107,296,694UniSTSGRCm38
MGSCv379107,198,783 - 107,199,025UniSTSGRCm37
Celera9106,902,663 - 106,902,905UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
PMC156147P15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,296,634 - 107,296,792UniSTSGRCm38
MGSCv379107,198,965 - 107,199,123UniSTSGRCm37
Celera9106,902,845 - 106,903,003UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
PMC156147P16  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,296,705 - 107,296,792UniSTSGRCm38
MGSCv379107,199,036 - 107,199,123UniSTSGRCm37
Celera9106,902,916 - 106,903,003UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
PMC156147P17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,296,758 - 107,296,975UniSTSGRCm38
MGSCv379107,199,089 - 107,199,306UniSTSGRCm37
Celera9106,902,969 - 106,903,186UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
PMC156147P18  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,296,064 - 107,296,975UniSTSGRCm38
MGSCv379107,198,395 - 107,199,306UniSTSGRCm37
Celera9106,902,273 - 106,903,186UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
PMC156147P19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,296,064 - 107,296,140UniSTSGRCm38
MGSCv379107,198,395 - 107,198,471UniSTSGRCm37
Celera9106,902,273 - 106,902,349UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
PMC156147P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,300,544 - 107,300,721UniSTSGRCm38
MGSCv379107,202,875 - 107,203,052UniSTSGRCm37
Celera9106,906,727 - 106,906,904UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
AI385595  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,301,651 - 107,301,777UniSTSGRCm38
MGSCv379107,203,982 - 107,204,108UniSTSGRCm37
Celera9106,907,834 - 106,907,960UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
Whitehead/MRC_RH91100.62UniSTS
Whitehead/MRC_RH91107.52UniSTS
PMC60859P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389107,301,617 - 107,301,721UniSTSGRCm38
MGSCv379107,203,948 - 107,204,052UniSTSGRCm37
Celera9106,907,800 - 106,907,904UniSTS
Cytogenetic Map9F1UniSTS
cM Map959.0UniSTS
Cish  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F1UniSTS
cM Map957.99UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1714
Count of miRNA genes:623
Interacting mature miRNAs:761
Transcripts:ENSMUST00000085102, ENSMUST00000165664, ENSMUST00000167072, ENSMUST00000168260, ENSMUST00000171568
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000085102   ⟹   ENSMUSP00000082183
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,296,026 - 107,301,987 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165664
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,296,907 - 107,301,943 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167072   ⟹   ENSMUSP00000129941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,296,912 - 107,300,551 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168260   ⟹   ENSMUSP00000127523
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,296,710 - 107,302,784 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,299,155 - 107,300,458 (+)Ensembl
RefSeq Acc Id: NM_001317354   ⟹   NP_001304283
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,173,858 - 107,179,983 (+)NCBI
GRCm389107,296,659 - 107,302,784 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009895   ⟹   NP_034025
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,173,858 - 107,179,983 (+)NCBI
GRCm389107,296,659 - 107,302,784 (+)NCBI
MGSCv379107,199,020 - 107,204,292 (+)RGD
Celera9106,902,900 - 106,908,144 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511635   ⟹   XP_006511698
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,174,240 - 107,179,172 (+)NCBI
GRCm389107,297,041 - 107,301,966 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034025   ⟸   NM_009895
- Peptide Label: isoform 1
- UniProtKB: Q62225 (UniProtKB/Swiss-Prot),   Q8C3F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511698   ⟸   XM_006511635
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001304283   ⟸   NM_001317354
- Peptide Label: isoform 2
- UniProtKB: Q62225 (UniProtKB/Swiss-Prot),   Q8C3F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000082183   ⟸   ENSMUST00000085102
RefSeq Acc Id: ENSMUSP00000127523   ⟸   ENSMUST00000168260
RefSeq Acc Id: ENSMUSP00000129941   ⟸   ENSMUST00000167072
Protein Domains
SH2   SOCS box

Promoters
RGD ID:6844326
Promoter ID:MM_KWN:58707
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:NM_009895,   UC009RLD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,198,741 - 107,199,327 (+)MPROMDB
RGD ID:6848393
Promoter ID:MM_ACW:51931
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Kidney,   Lung
Transcripts:CISH.CSEP07-UNSPLICED,   CISH.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,202,406 - 107,203,157 (+)MPROMDB
RGD ID:8670772
Promoter ID:EPDNEW_M13417
Type:multiple initiation site
Name:Cish_2
Description:Mus musculus cytokine inducible SH2-containing protein , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13418  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,296,692 - 107,296,752EPDNEW
RGD ID:8670774
Promoter ID:EPDNEW_M13418
Type:initiation region
Name:Cish_1
Description:Mus musculus cytokine inducible SH2-containing protein , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13417  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,296,894 - 107,296,954EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103159 AgrOrtholog
Ensembl Genes ENSMUSG00000032578 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000082183 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000127523 UniProtKB/TrEMBL
  ENSMUSP00000129941 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000085102 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000167072 UniProtKB/TrEMBL
  ENSMUST00000168260 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CIS_SH2 UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOCS_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOCS_box-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:103159 ENTREZGENE
NCBI Gene 12700 ENTREZGENE
PANTHER PTHR10155:SF9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOCS_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cish PhenoGen
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot
PROSITE SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOCS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SH2 UniProtKB/Swiss-Prot
  SOCS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOCS_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF158235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55550 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CISH_MOUSE UniProtKB/Swiss-Prot
  E9Q273_MOUSE UniProtKB/TrEMBL
  E9Q2F4_MOUSE UniProtKB/TrEMBL
  Q3TD28_MOUSE UniProtKB/TrEMBL
  Q3TDM7_MOUSE UniProtKB/TrEMBL
  Q62225 ENTREZGENE
  Q8C3F4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q3TC70 UniProtKB/Swiss-Prot