Usp2 (ubiquitin specific peptidase 2) - Rat Genome Database

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Gene: Usp2 (ubiquitin specific peptidase 2) Mus musculus
Analyze
Symbol: Usp2
Name: ubiquitin specific peptidase 2
RGD ID: 735358
MGI Page MGI
Description: Enables identical protein binding activity. Involved in several processes, including circadian regulation of gene expression; entrainment of circadian clock by photoperiod; and locomotor rhythm. Located in cytoplasm and membrane. Is expressed in several structures, including alimentary system; central nervous system; eye; integumental system; and reproductive system. Orthologous to human USP2 (ubiquitin specific peptidase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 41 kDa ubiquitin-specific protease; B930035K21Rik; deubiquitinating enzyme 2; ubiquitin carboxyl-terminal hydrolase 2; ubiquitin specific protease 2; ubiquitin thioesterase 2; ubiquitin thiolesterase 2; ubiquitin-specific-processing protease 2; ubp4; Ubp41
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39943,978,318 - 44,006,924 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl943,978,318 - 44,006,924 (+)EnsemblGRCm39 Ensembl
GRCm38944,067,021 - 44,095,627 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,067,021 - 44,095,627 (+)EnsemblGRCm38mm10GRCm38
MGSCv37943,875,104 - 43,903,710 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36943,818,162 - 43,845,472 (+)NCBIMGSCv36mm8
Celera941,325,008 - 41,353,422 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map924.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(2,4,5-trichlorophenoxy)acetic acid  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-benzylpiperazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
1H-pyrazole  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-hydroxyisovaleric acid  (ISO)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
Actein  (ISO)
aflatoxin B1  (EXP,ISO)
aldrin  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (EXP)
calcium atom  (EXP)
calcium(0)  (EXP)
cannabidiol  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (EXP)
chloroquine  (EXP)
chlorpyrifos  (EXP,ISO)
choline  (EXP)
chrysene  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
cyanocob(III)alamin  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP)
dibenz[a,h]anthracene  (EXP)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
diethyl maleate  (ISO)
dimethylarsinic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
folic acid  (EXP)
gallic acid  (ISO)
gentamycin  (ISO)
glycine betaine  (EXP)
glyphosate  (ISO)
graphene oxide  (EXP)
hypochlorous acid  (EXP)
imidacloprid  (ISO)
inulin  (EXP)
isoprenaline  (ISO)
isotretinoin  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
levofloxacin  (ISO)
lipopolysaccharide  (ISO)
malathion  (ISO)
mercury dichloride  (ISO)
metacetamol  (EXP)
methotrexate  (EXP)
methoxychlor  (ISO)
Muraglitazar  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
quercetin  (EXP,ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
ritodrine  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sevoflurane  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
streptozocin  (ISO)
succimer  (EXP)
sulforaphane  (EXP,ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thiabendazole  (ISO)
thioacetamide  (ISO)
tributylstannane  (EXP)
trichloroethene  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (EXP)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Gene discovery by microarray: identification of novel genes induced during growth factor-mediated muscle cell survival and differentiation. Kuninger D, etal., Genomics 2004 Nov;84(5):876-89.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12140190   PMID:12477932   PMID:14610273   PMID:14686789   PMID:15226823   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16778019   PMID:16964442   PMID:16966370   PMID:19001362   PMID:21267068   PMID:21478478   PMID:21543767   PMID:21677750   PMID:21873635  
PMID:21966515   PMID:22447855   PMID:22669941   PMID:23133608   PMID:23213472   PMID:23548632   PMID:23552861   PMID:24005904   PMID:24194600   PMID:25238854   PMID:25681390   PMID:26643174  
PMID:26756164   PMID:27626380   PMID:28586165   PMID:29490279   PMID:31353872   PMID:31875550   PMID:32325033   PMID:33104844   PMID:33621249   PMID:35504726   PMID:37199836   PMID:38055802  


Genomics

Comparative Map Data
Usp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39943,978,318 - 44,006,924 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl943,978,318 - 44,006,924 (+)EnsemblGRCm39 Ensembl
GRCm38944,067,021 - 44,095,627 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,067,021 - 44,095,627 (+)EnsemblGRCm38mm10GRCm38
MGSCv37943,875,104 - 43,903,710 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36943,818,162 - 43,845,472 (+)NCBIMGSCv36mm8
Celera941,325,008 - 41,353,422 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map924.53NCBI
USP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,355,215 - 119,381,690 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,355,215 - 119,381,711 (-)EnsemblGRCh38hg38GRCh38
GRCh3711119,225,925 - 119,252,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,732,163 - 118,757,575 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411118,732,754 - 118,740,102NCBI
Celera11116,386,596 - 116,413,112 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11115,167,582 - 115,194,094 (-)NCBIHuRef
CHM1_111119,112,501 - 119,139,031 (-)NCBICHM1_1
T2T-CHM13v2.011119,376,744 - 119,403,221 (-)NCBIT2T-CHM13v2.0
Usp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,308,264 - 53,336,800 (+)NCBIGRCr8
mRatBN7.2844,411,457 - 44,439,668 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,411,607 - 44,438,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx849,912,278 - 49,936,574 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,190,992 - 48,215,284 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,058,574 - 46,082,906 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,403,985 - 48,432,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,406,260 - 48,430,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,020,039 - 47,048,354 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,052,085 - 47,076,321 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,060,850 - 47,085,070 (+)NCBI
Celera844,001,154 - 44,025,278 (+)NCBICelera
Cytogenetic Map8q22NCBI
Usp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,433,302 - 20,457,493 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,435,778 - 20,461,898 (-)NCBIChiLan1.0ChiLan1.0
USP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29120,063,452 - 120,090,139 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111121,166,911 - 121,193,613 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011114,196,725 - 114,223,411 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111118,124,350 - 118,150,868 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11118,124,350 - 118,150,868 (-)Ensemblpanpan1.1panPan2
USP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,525,685 - 14,550,914 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,525,797 - 14,549,291 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,579,281 - 14,604,451 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,469,193 - 14,494,315 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,469,306 - 14,494,323 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1514,607,448 - 14,632,620 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,511,479 - 14,536,582 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,551,610 - 14,576,719 (+)NCBIUU_Cfam_GSD_1.0
Usp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,362,834 - 101,388,611 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365424,285,819 - 4,307,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365424,284,243 - 4,310,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,563,482 - 46,590,392 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,563,469 - 46,590,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,595,416 - 51,622,353 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,733,097 - 110,760,119 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,734,737 - 110,742,186 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,273,873 - 15,301,399 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,729,770 - 14,754,991 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,729,762 - 14,755,982 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Usp2
1078 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2274
Count of miRNA genes:687
Interacting mature miRNAs:869
Transcripts:ENSMUST00000034508, ENSMUST00000065461, ENSMUST00000114830, ENSMUST00000175816, ENSMUST00000176022, ENSMUST00000176416, ENSMUST00000176671, ENSMUST00000177054, ENSMUST00000177422
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93715336244251323Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
12738415Lfibq8_mliver fibrosis QTL 8 (mouse)94140216245343743Mouse
13515055Adip20a_madiposity 20a (mouse)94269071644053852Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
13432191Actrse4_mactivity response to saline/ethanol 4 (mouse)94370321448603195Mouse

Markers in Region
D9Mit228  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38944,083,235 - 44,083,375UniSTSGRCm38
MGSCv37943,891,318 - 43,891,458UniSTSGRCm37
Celera941,341,016 - 41,341,160UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map9A5.1UniSTS
cM Map926.0UniSTS
Whitehead Genetic920.8UniSTS
Usp2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38944,094,023 - 44,094,425UniSTSGRCm38
MGSCv37943,902,106 - 43,902,508UniSTSGRCm37
Celera941,351,819 - 41,352,221UniSTS
Cytogenetic Map9BUniSTS
cM Map9 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001407818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC148328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF079565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY255637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY255638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY255639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY255640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB617020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE991773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY097860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY237727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ715581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OQ148581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000034508   ⟹   ENSMUSP00000034508
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl943,978,318 - 44,006,924 (+)Ensembl
GRCm38.p6 Ensembl944,067,021 - 44,095,627 (+)Ensembl
RefSeq Acc Id: ENSMUST00000065461   ⟹   ENSMUSP00000070264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl943,996,236 - 44,005,774 (+)Ensembl
GRCm38.p6 Ensembl944,084,939 - 44,094,477 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114830   ⟹   ENSMUSP00000110479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl943,980,740 - 44,005,290 (+)Ensembl
GRCm38.p6 Ensembl944,069,443 - 44,093,993 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175816   ⟹   ENSMUSP00000135788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl943,998,487 - 44,003,797 (+)Ensembl
GRCm38.p6 Ensembl944,087,190 - 44,092,500 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,003,971 - 44,005,230 (+)Ensembl
GRCm38.p6 Ensembl944,092,674 - 44,093,933 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176416   ⟹   ENSMUSP00000135482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl943,996,247 - 44,005,223 (+)Ensembl
GRCm38.p6 Ensembl944,084,950 - 44,093,926 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176671   ⟹   ENSMUSP00000135859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl943,983,501 - 43,987,227 (+)Ensembl
GRCm38.p6 Ensembl944,072,204 - 44,075,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177054   ⟹   ENSMUSP00000135018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl943,978,375 - 44,005,226 (+)Ensembl
GRCm38.p6 Ensembl944,067,078 - 44,093,929 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,003,765 - 44,005,661 (+)Ensembl
GRCm38.p6 Ensembl944,092,468 - 44,094,364 (+)Ensembl
RefSeq Acc Id: NM_001407818   ⟹   NP_001394747
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,978,376 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407819   ⟹   NP_001394748
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,978,376 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407820   ⟹   NP_001394749
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,983,501 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407821   ⟹   NP_001394750
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,983,501 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407822   ⟹   NP_001394751
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,980,744 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407823   ⟹   NP_001394752
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,996,248 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407824   ⟹   NP_001394753
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,996,248 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407825   ⟹   NP_001394754
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,997,511 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407826   ⟹   NP_001394755
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,997,511 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_001407827   ⟹   NP_001394756
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,997,511 - 44,006,924 (+)NCBI
RefSeq Acc Id: NM_016808   ⟹   NP_058088
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,980,726 - 44,006,924 (+)NCBI
GRCm38944,069,429 - 44,095,627 (+)NCBI
MGSCv37943,875,104 - 43,903,710 (+)RGD
Celera941,325,008 - 41,353,422 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_198091   ⟹   NP_932759
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,996,217 - 44,006,924 (+)NCBI
GRCm38944,084,920 - 44,095,627 (+)NCBI
MGSCv37943,875,104 - 43,903,710 (+)RGD
Celera941,325,008 - 41,353,422 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_198092   ⟹   NP_932760
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,978,318 - 44,006,924 (+)NCBI
GRCm38944,067,021 - 44,095,627 (+)ENTREZGENE
MGSCv37943,875,104 - 43,903,710 (+)RGD
Celera941,325,008 - 41,353,422 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510486   ⟹   XP_006510549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39943,978,339 - 43,991,026 (+)NCBI
GRCm38944,067,042 - 44,079,726 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001394747 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394748 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394749 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394750 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394751 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394752 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394753 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394754 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394755 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394756 (Get FASTA)   NCBI Sequence Viewer  
  NP_058088 (Get FASTA)   NCBI Sequence Viewer  
  NP_932759 (Get FASTA)   NCBI Sequence Viewer  
  NP_932760 (Get FASTA)   NCBI Sequence Viewer  
  XP_006510549 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC28393 (Get FASTA)   NCBI Sequence Viewer  
  AAH17517 (Get FASTA)   NCBI Sequence Viewer  
  AAQ83301 (Get FASTA)   NCBI Sequence Viewer  
  AAQ83302 (Get FASTA)   NCBI Sequence Viewer  
  AAQ83303 (Get FASTA)   NCBI Sequence Viewer  
  AAQ83304 (Get FASTA)   NCBI Sequence Viewer  
  BAA95110 (Get FASTA)   NCBI Sequence Viewer  
  BAE23782 (Get FASTA)   NCBI Sequence Viewer  
  EDL25560 (Get FASTA)   NCBI Sequence Viewer  
  EDL25561 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000034508
  ENSMUSP00000034508.8
  ENSMUSP00000070264
  ENSMUSP00000070264.8
  ENSMUSP00000110479
  ENSMUSP00000110479.3
  ENSMUSP00000135018
  ENSMUSP00000135018.2
  ENSMUSP00000135482
  ENSMUSP00000135482.2
  ENSMUSP00000135788.2
  ENSMUSP00000135859.2
GenBank Protein O88623 (Get FASTA)   NCBI Sequence Viewer  
  WIA47112 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_932760   ⟸   NM_198092
- Peptide Label: isoform Usp2-69
- UniProtKB: Q8VD74 (UniProtKB/Swiss-Prot),   Q6X4U1 (UniProtKB/Swiss-Prot),   Q6X4T9 (UniProtKB/Swiss-Prot),   Q9JJ87 (UniProtKB/Swiss-Prot),   O88623 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_058088   ⟸   NM_016808
- Peptide Label: isoform Usp2-69
- UniProtKB: Q8VD74 (UniProtKB/Swiss-Prot),   Q6X4U1 (UniProtKB/Swiss-Prot),   Q6X4T9 (UniProtKB/Swiss-Prot),   Q9JJ87 (UniProtKB/Swiss-Prot),   O88623 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_932759   ⟸   NM_198091
- Peptide Label: isoform Usp2-45
- UniProtKB: O88623 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510549   ⟸   XM_006510486
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000070264   ⟸   ENSMUST00000065461
RefSeq Acc Id: ENSMUSP00000135018   ⟸   ENSMUST00000177054
RefSeq Acc Id: ENSMUSP00000034508   ⟸   ENSMUST00000034508
RefSeq Acc Id: ENSMUSP00000110479   ⟸   ENSMUST00000114830
RefSeq Acc Id: ENSMUSP00000135482   ⟸   ENSMUST00000176416
RefSeq Acc Id: ENSMUSP00000135859   ⟸   ENSMUST00000176671
RefSeq Acc Id: ENSMUSP00000135788   ⟸   ENSMUST00000175816
RefSeq Acc Id: NP_001394748   ⟸   NM_001407819
- Peptide Label: isoform Usp2-69
- UniProtKB: Q8VD74 (UniProtKB/Swiss-Prot),   Q6X4U1 (UniProtKB/Swiss-Prot),   Q6X4T9 (UniProtKB/Swiss-Prot),   O88623 (UniProtKB/Swiss-Prot),   Q9JJ87 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001394747   ⟸   NM_001407818
- Peptide Label: isoform Usp2-69
- UniProtKB: Q8VD74 (UniProtKB/Swiss-Prot),   Q6X4U1 (UniProtKB/Swiss-Prot),   Q6X4T9 (UniProtKB/Swiss-Prot),   O88623 (UniProtKB/Swiss-Prot),   Q9JJ87 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001394751   ⟸   NM_001407822
- Peptide Label: isoform Usp2-69
- UniProtKB: Q8VD74 (UniProtKB/Swiss-Prot),   Q6X4U1 (UniProtKB/Swiss-Prot),   Q6X4T9 (UniProtKB/Swiss-Prot),   O88623 (UniProtKB/Swiss-Prot),   Q9JJ87 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001394750   ⟸   NM_001407821
- Peptide Label: isoform Usp2-69
- UniProtKB: Q8VD74 (UniProtKB/Swiss-Prot),   Q6X4U1 (UniProtKB/Swiss-Prot),   Q6X4T9 (UniProtKB/Swiss-Prot),   O88623 (UniProtKB/Swiss-Prot),   Q9JJ87 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001394749   ⟸   NM_001407820
- Peptide Label: isoform Usp2-69
- UniProtKB: Q8VD74 (UniProtKB/Swiss-Prot),   Q6X4U1 (UniProtKB/Swiss-Prot),   Q6X4T9 (UniProtKB/Swiss-Prot),   O88623 (UniProtKB/Swiss-Prot),   Q9JJ87 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001394753   ⟸   NM_001407824
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001394752   ⟸   NM_001407823
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001394756   ⟸   NM_001407827
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001394755   ⟸   NM_001407826
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001394754   ⟸   NM_001407825
- Peptide Label: isoform 3
Protein Domains
USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88623-F1-model_v2 AlphaFold O88623 1-613 view protein structure

Promoters
RGD ID:6845312
Promoter ID:MM_KWN:57075
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:NM_198092
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36943,874,999 - 43,875,499 (+)MPROMDB
RGD ID:6845314
Promoter ID:MM_KWN:57077
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:NM_198091
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36943,892,446 - 43,893,182 (+)MPROMDB
RGD ID:8669344
Promoter ID:EPDNEW_M12702
Type:multiple initiation site
Name:Usp2_1
Description:Mus musculus ubiquitin specific peptidase 2 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38944,084,951 - 44,085,011EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858178 AgrOrtholog
Ensembl Genes ENSMUSG00000032010 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034508 ENTREZGENE
  ENSMUST00000034508.14 UniProtKB/Swiss-Prot
  ENSMUST00000065461 ENTREZGENE
  ENSMUST00000065461.9 UniProtKB/Swiss-Prot
  ENSMUST00000114830 ENTREZGENE
  ENSMUST00000114830.9 UniProtKB/Swiss-Prot
  ENSMUST00000175816.2 UniProtKB/TrEMBL
  ENSMUST00000176416 ENTREZGENE
  ENSMUST00000176416.8 UniProtKB/Swiss-Prot
  ENSMUST00000176671.2 UniProtKB/TrEMBL
  ENSMUST00000177054 ENTREZGENE
  ENSMUST00000177054.8 UniProtKB/Swiss-Prot
Gene3D-CATH Cysteine proteinases UniProtKB/Swiss-Prot
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Peptidase_C19_UCH UniProtKB/Swiss-Prot
  USP_CS UniProtKB/Swiss-Prot
  USP_dom UniProtKB/Swiss-Prot
KEGG Report mmu:53376 UniProtKB/Swiss-Prot
MGD MGI:1858178 ENTREZGENE
NCBI Gene 53376 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 UniProtKB/Swiss-Prot
Pfam UCH UniProtKB/Swiss-Prot
PhenoGen Usp2 PhenoGen
PROSITE USP_1 UniProtKB/Swiss-Prot
  USP_2 UniProtKB/Swiss-Prot
  USP_3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot
UniProt H3BLH3_MOUSE UniProtKB/TrEMBL
  H3BLN9_MOUSE UniProtKB/TrEMBL
  O88623 ENTREZGENE
  Q6X4T9 ENTREZGENE
  Q6X4U1 ENTREZGENE
  Q8VD74 ENTREZGENE
  Q9JJ87 ENTREZGENE
  UBP2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6X4T9 UniProtKB/Swiss-Prot
  Q6X4U1 UniProtKB/Swiss-Prot
  Q8VD74 UniProtKB/Swiss-Prot
  Q9JJ87 UniProtKB/Swiss-Prot