Mc3r (melanocortin 3 receptor) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Mc3r (melanocortin 3 receptor) Mus musculus
Analyze
Symbol: Mc3r
Name: melanocortin 3 receptor
RGD ID: 735312
MGI Page MGI
Description: Enables melanocyte-stimulating hormone receptor activity. Involved in circadian regulation of gene expression; locomotor rhythm; and regulation of feeding behavior. Predicted to be active in cytoplasm and plasma membrane. Is expressed in central nervous system and retina. Used to study obesity. Human ortholog(s) of this gene implicated in obesity. Orthologous to human MC3R (melanocortin 3 receptor).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: MC3-R; melanocortin receptor 3; MGC124211; MGC124212
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392172,090,412 - 172,093,034 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2172,090,412 - 172,093,034 (+)EnsemblGRCm39 Ensembl
GRCm382172,248,492 - 172,251,114 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2172,248,492 - 172,251,114 (+)EnsemblGRCm38mm10GRCm38
MGSCv372172,073,992 - 172,076,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362171,939,697 - 171,942,319 (+)NCBIMGSCv36mm8
Celera2178,203,122 - 178,205,744 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map294.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Acute-Phase Reaction  (ISO)
obesity  (IAGP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
plasma membrane  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The genetic association database. Becker KG, etal., Nat Genet. 2004 May;36(5):431-2.
2. The melanocortin system in control of inflammation. Catania A, etal., ScientificWorldJournal. 2010 Sep 14;10:1840-53.
3. Co-occurrence of two partially inactivating polymorphisms of MC3R is associated with pediatric-onset obesity. Feng N, etal., Diabetes. 2005 Sep;54(9):2663-7.
4. A novel melanocortin 3 receptor gene (MC3R) mutation associated with severe obesity. Lee YS, etal., J Clin Endocrinol Metab. 2002 Mar;87(3):1423-6.
5. Melanocortin receptors in rat liver cells: change of gene expression and intracellular localization during acute-phase response. Malik IA, etal., Histochem Cell Biol. 2012 Mar;137(3):279-91. Epub 2011 Dec 20.
6. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Identification of a receptor for gamma melanotropin and other proopiomelanocortin peptides in the hypothalamus and limbic system. Roselli-Rehfuss L, etal., Proc Natl Acad Sci U S A 1993 Oct 1;90(19):8856-60.
Additional References at PubMed
PMID:7781998   PMID:7949735   PMID:8000144   PMID:8172596   PMID:8185570   PMID:8954958   PMID:8973143   PMID:8990120   PMID:9151674   PMID:9454589   PMID:9514916   PMID:9545506  
PMID:9616220   PMID:9763877   PMID:9990303   PMID:10321434   PMID:10349636   PMID:10534402   PMID:10965927   PMID:10973258   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11369941  
PMID:12477932   PMID:12620396   PMID:12626592   PMID:12639936   PMID:12697744   PMID:12851322   PMID:12865302   PMID:12881723   PMID:14707012   PMID:14962995   PMID:15034587   PMID:15642615  
PMID:15699165   PMID:16005545   PMID:16141072   PMID:16141073   PMID:16414147   PMID:16469808   PMID:16602821   PMID:17053546   PMID:17077300   PMID:17405938   PMID:17885689   PMID:17901224  
PMID:18070757   PMID:18719666   PMID:18757499   PMID:19036988   PMID:19041763   PMID:19570576   PMID:19646498   PMID:19837866   PMID:19889022   PMID:20375267   PMID:20526334   PMID:20702773  
PMID:20800636   PMID:21199647   PMID:21267068   PMID:21497617   PMID:21677750   PMID:21703408   PMID:21873635   PMID:21940628   PMID:21984834   PMID:22353545   PMID:22573815   PMID:23007189  
PMID:23070814   PMID:23312282   PMID:23867526   PMID:24605830   PMID:24952961   PMID:24979595   PMID:24981835   PMID:25211592   PMID:25450386   PMID:25701401   PMID:25810521   PMID:26112010  
PMID:26818770   PMID:27408780   PMID:28294152   PMID:30140740   PMID:30307151   PMID:30541071   PMID:32029712   PMID:32856297   PMID:33883274   PMID:34371079   PMID:34400348   PMID:34732894  
PMID:35536884   PMID:35770983   PMID:37591737   PMID:37792535   PMID:38355793  


Genomics

Comparative Map Data
Mc3r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392172,090,412 - 172,093,034 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2172,090,412 - 172,093,034 (+)EnsemblGRCm39 Ensembl
GRCm382172,248,492 - 172,251,114 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2172,248,492 - 172,251,114 (+)EnsemblGRCm38mm10GRCm38
MGSCv372172,073,992 - 172,076,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362171,939,697 - 171,942,319 (+)NCBIMGSCv36mm8
Celera2178,203,122 - 178,205,744 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map294.8NCBI
MC3R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382056,248,732 - 56,249,815 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2056,248,732 - 56,249,815 (+)EnsemblGRCh38hg38GRCh38
GRCh372054,823,788 - 54,824,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362054,257,196 - 54,258,278 (+)NCBINCBI36Build 36hg18NCBI36
Build 342054,257,195 - 54,258,278NCBI
Celera2051,563,099 - 51,564,182 (+)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2051,605,969 - 51,607,052 (+)NCBIHuRef
CHM1_12054,724,847 - 54,725,930 (+)NCBICHM1_1
T2T-CHM13v2.02058,023,746 - 58,024,829 (+)NCBIT2T-CHM13v2.0
Mc3r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83181,434,776 - 181,435,873 (+)NCBIGRCr8
mRatBN7.23161,016,347 - 161,017,444 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3161,016,347 - 161,017,444 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3164,826,379 - 164,827,476 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03173,325,381 - 173,326,478 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03171,067,209 - 171,068,306 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03170,252,901 - 170,253,998 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3170,252,901 - 170,253,998 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03176,331,172 - 176,332,269 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43163,158,776 - 163,159,873 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13163,064,613 - 163,065,946 (+)NCBI
Celera3160,219,693 - 160,220,790 (+)NCBICelera
Cytogenetic Map3q42NCBI
Mc3r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554452,978,320 - 2,979,291 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554452,977,026 - 2,979,375 (-)NCBIChiLan1.0ChiLan1.0
MC3R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22161,991,634 - 61,994,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12061,984,752 - 61,987,612 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02052,582,826 - 52,585,688 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12053,871,510 - 53,872,598 (+)NCBIpanpan1.1PanPan1.1panPan2
MC3R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12441,492,371 - 41,494,033 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2441,492,371 - 41,494,033 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2440,740,767 - 40,742,429 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02442,204,101 - 42,206,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2442,204,169 - 42,205,831 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12441,443,631 - 41,445,290 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02441,583,159 - 41,584,826 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02442,240,608 - 42,242,272 (+)NCBIUU_Cfam_GSD_1.0
Mc3r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640183,910,782 - 183,913,588 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936875172,862 - 173,830 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936875172,764 - 174,446 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MC3R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1756,868,525 - 56,869,605 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11756,868,525 - 56,869,605 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21763,979,619 - 63,982,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MC3R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.127,867,355 - 7,871,292 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl27,869,518 - 7,870,489 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605055,943,272 - 55,946,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mc3r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624790285,965 - 286,936 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624790284,586 - 287,268 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mc3r
155 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:374
Count of miRNA genes:293
Interacting mature miRNAs:316
Transcripts:ENSMUST00000038532
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
1357685Skts13_mskin tumor sucseptibility 13 (mouse)Not determined2168623533172405326Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse

Markers in Region
X74983  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382172,250,030 - 172,250,194UniSTSGRCm38
MGSCv372172,075,530 - 172,075,694UniSTSGRCm37
Celera2178,204,660 - 178,204,824UniSTS
Cytogenetic Map2H3UniSTS
cM Map2100.0UniSTS
Whitehead/MRC_RH21921.51UniSTS
Edn3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382172,249,641 - 172,249,869UniSTSGRCm38
MGSCv372172,075,141 - 172,075,369UniSTSGRCm37
Celera2178,204,271 - 178,204,499UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2H4UniSTS
cM Map2104.0UniSTS
Edn3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H3UniSTS
Cytogenetic Map2H4UniSTS
cM Map2100.0UniSTS
cM Map2104.0UniSTS
UniSTS:484941  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382172,248,498 - 172,250,059UniSTSGRCm38
MGSCv372172,073,998 - 172,075,559UniSTSGRCm37
Celera2178,203,128 - 178,204,689UniSTS
Cytogenetic Map2H3UniSTS
cM Map2100.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000038532   ⟹   ENSMUSP00000047358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2172,090,412 - 172,093,034 (+)Ensembl
GRCm38.p6 Ensembl2172,248,492 - 172,251,114 (+)Ensembl
RefSeq Acc Id: NM_008561   ⟹   NP_032587
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392172,090,412 - 172,093,034 (+)NCBI
GRCm382172,248,492 - 172,251,114 (+)ENTREZGENE
MGSCv372172,073,992 - 172,076,614 (+)RGD
Celera2178,203,122 - 178,205,744 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032587   ⟸   NM_008561
- UniProtKB: P33033 (UniProtKB/Swiss-Prot),   Q544G7 (UniProtKB/TrEMBL),   Q3ZAT4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000047358   ⟸   ENSMUST00000038532
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P33033-F1-model_v2 AlphaFold P33033 1-323 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96929 AgrOrtholog
Ensembl Genes ENSMUSG00000038537 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000038532 ENTREZGENE
  ENSMUST00000038532.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mcort_3_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Melancort_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Melcrt_ACTH_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17201 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:96929 ENTREZGENE
NCBI Gene 17201 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mc3r PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MCRFAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MELNOCORTINR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MELNOCORTN3R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt MC3R_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3ZAT4 ENTREZGENE, UniProtKB/TrEMBL
  Q544G7 ENTREZGENE, UniProtKB/TrEMBL