Cntn4 (contactin 4) - Rat Genome Database

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Gene: Cntn4 (contactin 4) Mus musculus
Analyze
Symbol: Cntn4
Name: contactin 4
RGD ID: 735277
MGI Page MGI
Description: Predicted to be involved in negative regulation of neuron differentiation and neuron projection development. Predicted to localize to neuron projection. Is expressed in central nervous system; dorsal root ganglion; and retina. Orthologous to human CNTN4 (contactin 4); INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9630050B05; Axc; Axcam; axonal-associated cell adhesion molecule; BIG-; BIG-2; brain-derived immunoglobulin superfamily molecule; brain-derived immunoglobulin superfamily protein 2; contactin-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396105,654,298 - 106,677,102 (+)NCBIGRCm39mm39
GRCm39 Ensembl6105,654,621 - 106,676,271 (+)Ensembl
GRCm386105,677,632 - 106,700,141 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6105,677,660 - 106,699,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv376105,627,739 - 106,649,299 (+)NCBIGRCm37mm9NCBIm37
MGSCv366105,643,549 - 106,640,041 (+)NCBImm8
Celera6107,502,223 - 108,515,798 (+)NCBICelera
Cytogenetic Map6E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:9221934   PMID:9332725   PMID:9733924   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14571131   PMID:15368895   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:16701205   PMID:16964447   PMID:18367085   PMID:19554387   PMID:21677750   PMID:21752992   PMID:21873635   PMID:23090999   PMID:23904439   PMID:23926254   PMID:24559674  
PMID:25810521   PMID:25826454   PMID:25959733   PMID:26633812   PMID:26958094   PMID:27539848   PMID:28671696   PMID:29970989  


Genomics

Comparative Map Data
Cntn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396105,654,298 - 106,677,102 (+)NCBIGRCm39mm39
GRCm39 Ensembl6105,654,621 - 106,676,271 (+)Ensembl
GRCm386105,677,632 - 106,700,141 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6105,677,660 - 106,699,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv376105,627,739 - 106,649,299 (+)NCBIGRCm37mm9NCBIm37
MGSCv366105,643,549 - 106,640,041 (+)NCBImm8
Celera6107,502,223 - 108,515,798 (+)NCBICelera
Cytogenetic Map6E1NCBI
CNTN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl32,098,813 - 3,057,959 (+)EnsemblGRCh38hg38GRCh38
GRCh3832,098,866 - 3,059,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3732,140,550 - 3,099,643 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3632,117,247 - 3,074,645 (+)NCBINCBI36hg18NCBI36
Build 3432,908,920 - 3,073,039NCBI
Celera32,081,784 - 3,038,879 (+)NCBI
Cytogenetic Map3p26.3-p26.2NCBI
HuRef32,074,437 - 3,033,830 (+)NCBIHuRef
CHM1_132,090,535 - 3,049,636 (+)NCBICHM1_1
Cntn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24138,624,584 - 139,622,499 (+)NCBI
Rnor_6.0 Ensembl4138,269,142 - 138,787,525 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04137,785,166 - 138,787,527 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04202,256,218 - 203,255,494 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44141,199,447 - 142,055,176 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14141,444,286 - 142,300,017 (+)NCBI
Celera4127,345,384 - 128,333,104 (+)NCBICelera
Cytogenetic Map4q41NCBI
Cntn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542110,266,640 - 10,723,228 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542110,267,471 - 10,928,734 (-)NCBIChiLan1.0ChiLan1.0
CNTN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.132,383,711 - 3,103,526 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl32,616,432 - 3,101,786 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v032,037,293 - 2,998,793 (+)NCBIMhudiblu_PPA_v0panPan3
CNTN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12014,354,148 - 15,277,202 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2014,356,710 - 14,954,367 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2014,319,249 - 15,240,467 (-)NCBI
ROS_Cfam_1.02014,386,416 - 15,303,888 (-)NCBI
UMICH_Zoey_3.12014,087,466 - 15,002,389 (-)NCBI
UNSW_CanFamBas_1.02014,421,742 - 15,343,924 (-)NCBI
UU_Cfam_GSD_1.02014,412,972 - 15,329,098 (-)NCBI
Cntn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049429,186,381 - 9,814,550 (+)NCBI
SpeTri2.0NW_0049365772,298,648 - 2,768,864 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1358,974,198 - 59,642,133 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11358,642,653 - 59,642,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21365,607,647 - 65,939,595 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNTN4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12238,177,481 - 39,145,568 (+)NCBI
ChlSab1.1 Ensembl2238,813,569 - 39,146,953 (+)Ensembl
Cntn4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477312,331,286 - 13,302,770 (+)NCBI

Position Markers
X99043  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,674,045 - 106,674,241UniSTSGRCm38
MGSCv376106,624,039 - 106,624,235UniSTSGRCm37
Celera6108,490,414 - 108,490,610UniSTS
Cytogenetic Map6E2UniSTS
Whitehead_YAC6 UniSTS
D6Mit149  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,005,405 - 106,005,603UniSTSGRCm38
MGSCv376105,955,399 - 105,955,597UniSTSGRCm37
Celera6107,821,899 - 107,822,105UniSTS
Cytogenetic Map6E2UniSTS
cM Map646.3UniSTS
Whitehead Genetic640.4UniSTS
Whitehead_YAC6 UniSTS
D6Mit192  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,058,834 - 106,059,025UniSTSGRCm38
MGSCv376106,008,828 - 106,009,019UniSTSGRCm37
Celera6107,875,381 - 107,875,578UniSTS
Cytogenetic Map6E2UniSTS
cM Map646.3UniSTS
Whitehead Genetic640.4UniSTS
Whitehead/MRC_RH61101.26UniSTS
D6Mit286  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,450,231 - 106,450,346UniSTSGRCm38
MGSCv376106,400,225 - 106,400,340UniSTSGRCm37
Celera6108,254,977 - 108,255,096UniSTS
Cytogenetic Map6E2UniSTS
cM Map646.5UniSTS
Whitehead Genetic640.4UniSTS
Whitehead_YAC6 UniSTS
D6Mit39  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,569,226 - 106,569,365UniSTSGRCm38
MGSCv376106,519,220 - 106,519,359UniSTSGRCm37
Celera6108,375,429 - 108,375,544UniSTS
Cytogenetic Map6E2UniSTS
cM Map646.3UniSTS
Whitehead Genetic640.4UniSTS
Whitehead_YAC6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
1300958Tmevd1_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 1 (mouse)Not determined6104503360106005603Mouse
12910776Hcga4b_mhome cage activity 4b (mouse)6104503360110960065Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
1357793Pnhdlc1_mplasma non-HDL cholesterol 1 (mouse)Not determined6105564822114368849Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined106005405120917141Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1863
Count of miRNA genes:639
Interacting mature miRNAs:815
Transcripts:ENSMUST00000079416, ENSMUST00000089208, ENSMUST00000113258, ENSMUST00000113260, ENSMUST00000113261, ENSMUST00000113264, ENSMUST00000123596, ENSMUST00000125904, ENSMUST00000130040, ENSMUST00000132044, ENSMUST00000132395, ENSMUST00000142626
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB078327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY267938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X99043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000079416   ⟹   ENSMUSP00000078385
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,119,006 - 106,673,487 (+)Ensembl
RefSeq Acc Id: ENSMUST00000089208   ⟹   ENSMUSP00000086616
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6105,677,775 - 106,699,310 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113258   ⟹   ENSMUSP00000108883
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,118,765 - 106,618,945 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113260   ⟹   ENSMUSP00000108885
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6105,924,800 - 106,674,270 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113261   ⟹   ENSMUSP00000108886
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6105,677,745 - 106,674,264 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113264   ⟹   ENSMUSP00000108889
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6105,677,745 - 106,699,305 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123596
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,679,270 - 106,680,242 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125904
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,118,918 - 106,525,530 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130040
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,119,055 - 106,345,739 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132044
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6105,677,660 - 105,840,506 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132395
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,513,558 - 106,697,756 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142626
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,694,153 - 106,697,900 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204621
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,655,503 - 106,699,192 (+)Ensembl
RefSeq Acc Id: NM_001109749   ⟹   NP_001103219
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,706 - 106,676,266 (+)NCBI
GRCm386105,677,745 - 106,699,305 (+)NCBI
MGSCv376105,627,739 - 106,649,299 (+)RGD
Celera6107,502,223 - 108,515,798 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001109751   ⟹   NP_001103221
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,726 - 106,651,231 (+)NCBI
GRCm386106,118,765 - 106,674,270 (+)NCBI
MGSCv376105,627,739 - 106,649,299 (+)RGD
Celera6107,502,223 - 108,515,798 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001364565   ⟹   NP_001351494
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,903 - 106,677,096 (+)NCBI
GRCm386106,118,942 - 106,700,135 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364566   ⟹   NP_001351495
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,628 - 106,677,096 (+)NCBI
GRCm386105,677,667 - 106,700,135 (+)NCBI
Sequence:
RefSeq Acc Id: NM_173004   ⟹   NP_766592
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,706 - 106,651,231 (+)NCBI
GRCm386105,677,745 - 106,674,270 (+)NCBI
MGSCv376105,627,739 - 106,649,299 (+)RGD
Celera6107,502,223 - 108,515,798 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506193   ⟹   XP_006506256
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,298 - 106,677,102 (+)NCBI
GRCm386105,677,632 - 106,700,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506195   ⟹   XP_006506258
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,207 - 106,677,098 (+)NCBI
GRCm386106,118,231 - 106,700,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506196   ⟹   XP_006506259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,528 - 106,677,102 (+)NCBI
GRCm386105,677,632 - 106,700,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506197   ⟹   XP_006506260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,551 - 106,677,102 (+)NCBI
GRCm386105,677,632 - 106,700,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506198   ⟹   XP_006506261
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,528 - 106,677,102 (+)NCBI
GRCm386105,677,632 - 106,700,141 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166168   ⟹   XP_036022061
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,428 - 106,677,102 (+)NCBI
RefSeq Acc Id: XM_036166169   ⟹   XP_036022062
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,208 - 106,677,102 (+)NCBI
RefSeq Acc Id: XM_036166170   ⟹   XP_036022063
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,505 - 106,677,102 (+)NCBI
RefSeq Acc Id: XM_036166171   ⟹   XP_036022064
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,459 - 106,677,102 (+)NCBI
RefSeq Acc Id: XM_036166172   ⟹   XP_036022065
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,211 - 106,677,098 (+)NCBI
RefSeq Acc Id: XM_036166173   ⟹   XP_036022066
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,519 - 106,677,102 (+)NCBI
RefSeq Acc Id: XM_036166174   ⟹   XP_036022067
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,208 - 106,677,102 (+)NCBI
RefSeq Acc Id: XM_036166175   ⟹   XP_036022068
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,208 - 106,677,102 (+)NCBI
RefSeq Acc Id: XM_036166176   ⟹   XP_036022069
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,204 - 106,651,236 (+)NCBI
RefSeq Acc Id: XM_036166177   ⟹   XP_036022070
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,505 - 106,651,236 (+)NCBI
RefSeq Acc Id: XM_036166178   ⟹   XP_036022071
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,459 - 106,651,231 (+)NCBI
RefSeq Acc Id: XM_036166179   ⟹   XP_036022072
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,095,201 - 106,651,236 (+)NCBI
RefSeq Acc Id: XM_036166180   ⟹   XP_036022073
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,519 - 106,651,233 (+)NCBI
RefSeq Acc Id: XM_036166181   ⟹   XP_036022074
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396105,654,528 - 106,651,236 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001103219 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103221 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351494 (Get FASTA)   NCBI Sequence Viewer  
  NP_001351495 (Get FASTA)   NCBI Sequence Viewer  
  NP_766592 (Get FASTA)   NCBI Sequence Viewer  
  XP_006506256 (Get FASTA)   NCBI Sequence Viewer  
  XP_006506258 (Get FASTA)   NCBI Sequence Viewer  
  XP_006506259 (Get FASTA)   NCBI Sequence Viewer  
  XP_006506260 (Get FASTA)   NCBI Sequence Viewer  
  XP_006506261 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022061 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022062 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022063 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022064 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022065 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022066 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022067 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022068 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022069 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022070 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022071 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022072 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022073 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022074 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI15767 (Get FASTA)   NCBI Sequence Viewer  
  BAC29365 (Get FASTA)   NCBI Sequence Viewer  
  BAC31563 (Get FASTA)   NCBI Sequence Viewer  
  BAD32618 (Get FASTA)   NCBI Sequence Viewer  
  BAE37380 (Get FASTA)   NCBI Sequence Viewer  
  CAA67504 (Get FASTA)   NCBI Sequence Viewer  
  EDK99394 (Get FASTA)   NCBI Sequence Viewer  
  Q69Z26 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_766592   ⟸   NM_173004
- Peptide Label: isoform 2 precursor
- UniProtKB: Q69Z26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001103219   ⟸   NM_001109749
- Peptide Label: isoform 1 precursor
- UniProtKB: Q69Z26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001103221   ⟸   NM_001109751
- Peptide Label: isoform 2 precursor
- UniProtKB: Q69Z26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506260   ⟸   XM_006506197
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006506259   ⟸   XM_006506196
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006506261   ⟸   XM_006506198
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006506256   ⟸   XM_006506193
- Peptide Label: isoform X1
- UniProtKB: Q69Z26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506258   ⟸   XM_006506195
- Peptide Label: isoform X1
- UniProtKB: Q69Z26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001351495   ⟸   NM_001364566
- Peptide Label: isoform 3 precursor
RefSeq Acc Id: NP_001351494   ⟸   NM_001364565
- Peptide Label: isoform 1 precursor
RefSeq Acc Id: ENSMUSP00000078385   ⟸   ENSMUST00000079416
RefSeq Acc Id: ENSMUSP00000108883   ⟸   ENSMUST00000113258
RefSeq Acc Id: ENSMUSP00000108889   ⟸   ENSMUST00000113264
RefSeq Acc Id: ENSMUSP00000108886   ⟸   ENSMUST00000113261
RefSeq Acc Id: ENSMUSP00000108885   ⟸   ENSMUST00000113260
RefSeq Acc Id: ENSMUSP00000086616   ⟸   ENSMUST00000089208
RefSeq Acc Id: XP_036022063   ⟸   XM_036166170
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036022070   ⟸   XM_036166177
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036022066   ⟸   XM_036166173
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036022073   ⟸   XM_036166180
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036022074   ⟸   XM_036166181
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036022072   ⟸   XM_036166179
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036022069   ⟸   XM_036166176
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036022067   ⟸   XM_036166174
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036022062   ⟸   XM_036166169
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036022068   ⟸   XM_036166175
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036022065   ⟸   XM_036166172
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036022061   ⟸   XM_036166168
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036022064   ⟸   XM_036166171
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036022071   ⟸   XM_036166178
- Peptide Label: isoform X5
Promoters
RGD ID:6839130
Promoter ID:MM_KWN:47079
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000089208,   NM_001109749,   NM_173004,   OTTMUST00000060446,   OTTMUST00000060452
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366105,627,191 - 105,627,691 (+)MPROMDB
RGD ID:6890564
Promoter ID:EPDNEW_M8733
Type:initiation region
Name:Cntn4_2
Description:Mus musculus contactin 4 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8734  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386105,677,679 - 105,677,739EPDNEW
RGD ID:6890566
Promoter ID:EPDNEW_M8734
Type:multiple initiation site
Name:Cntn4_1
Description:Mus musculus contactin 4 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8733  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386105,686,543 - 105,686,603EPDNEW
RGD ID:6839108
Promoter ID:MM_KWN:47081
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000079416,   ENSMUST00000113258,   NM_001109751,   OTTMUST00000060333,   UC009DCT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366106,068,421 - 106,068,921 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1095737 AgrOrtholog
Ensembl Genes ENSMUSG00000064293 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000078385 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000086616 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108883 UniProtKB/Swiss-Prot
  ENSMUSP00000108885 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108886 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108889 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000079416 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000089208 UniProtKB/Swiss-Prot
  ENSMUST00000113258 UniProtKB/Swiss-Prot
  ENSMUST00000113260 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113261 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113264 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Basigin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:269784 UniProtKB/Swiss-Prot
MGD MGI:1095737 ENTREZGENE
NCBI Gene 269784 ENTREZGENE
PANTHER PTHR10075 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cntn4 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CNTN4_MOUSE UniProtKB/Swiss-Prot
  F8WH58_MOUSE UniProtKB/TrEMBL
  Q3TQK2_MOUSE UniProtKB/TrEMBL
  Q69Z26 ENTREZGENE
UniProt Secondary Q14BL8 UniProtKB/Swiss-Prot
  Q8BRT6 UniProtKB/Swiss-Prot
  Q8CBD3 UniProtKB/Swiss-Prot